Ligand binding and gene control characteristics of tandem riboswitches in Bacillus anthracis.

No abstract is available for this paper.

• Publication year

  2007

• Venue

  RNA: A publication of the RNA Society

• Publication date

  2007-04-01

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1261/RNA.407707PMID 17307816PMCID PMC1831863
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Antibacterial lysine analogs that target lysine riboswitches.

  2007cited by this paper
• Sequence-based heuristics for faster annotation of non-coding RNA families

  2006cited by this paper
• Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition.

  2006cited by this paper
• Folding of the adenine riboswitch.

  2006cited by this paper
• Identification of a large noncoding RNA in extremophilic eubacteria

  2006cited by this paper
• Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

  2006cited by this paper
• Structure of the Eukaryotic Thiamine Pyrophosphate Riboswitch with Its Regulatory Ligand

  2006influential reference
• Tandem Riboswitch Architectures Exhibit Complex Gene Control Functions

  2006cited by this paper
• New insights into regulation of the tryptophan biosynthetic operon in Gram-positive bacteria.

  2005influential reference
• The kinetics of ligand binding by an adenine-sensing riboswitch.

  2005cited by this paper
• Thiamine pyrophosphate riboswitches are targets for the antimicrobial compound pyrithiamine.

  2005cited by this paper
• Roles of Mg2+ in TPP‐dependent riboswitch

  2005cited by this paper
• Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria

  2005cited by this paper
• Regulation of bacterial gene expression by riboswitches.

  2005cited by this paper
• Bioinformatics Original Paper Sequence-based Heuristics for Faster Annotation of Non-coding Rna Families

  2005cited by this paper
• Human and mouse oligonucleotide-based array CGH

  2005cited by this paper
• Riboswitches exert genetic control through metabolite-induced conformational change.

  2004cited by this paper
• Gene regulation by riboswitches

  2004cited by this paper
• CDD: a Conserved Domain Database for protein classification

  2004cited by this paper
• New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.

  2004cited by this paper
• Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria

  2004influential reference
• A Glycine-Dependent Riboswitch That Uses Cooperative Binding to Control Gene Expression

  2004cited by this paper
• Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes.

  2004cited by this paper
• Thiamine‐regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch‐like domain in the 5′‐UTR

  2003cited by this paper
• Transcription termination control of the S box system: Direct measurement of S-adenosylmethionine by the leader RNA

  2003cited by this paper
• Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria.

  2003cited by this paper
• Regulation of the vitamin B12 metabolism and transport in bacteria by a conserved RNA structural element.

  2003cited by this paper
• The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes

  2003cited by this paper
• An mRNA structure in bacteria that controls gene expression by binding lysine.

  2003cited by this paper
• An mRNA structure that controls gene expression by binding S-adenosylmethionine

  2003cited by this paper
• The riboswitch-mediated control of sulfur metabolism in bacteria

  2003cited by this paper
• Metabolite-binding RNA domains are present in the genes of eukaryotes.

  2003cited by this paper
• Genetic control by a metabolite binding mRNA.

  2002cited by this paper
• Comparative Genomics of Thiamin Biosynthesis in Procaryotes

  2002cited by this paper
• Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria.

  2002cited by this paper
• Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.

  2002cited by this paper
• Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

  2002cited by this paper
• An mRNA structure that controls gene expression by binding FMN

  2002cited by this paper
• A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria

  2001cited by this paper
• Immobilized RNA switches for the analysis of complex chemical and biological mixtures

  2001cited by this paper
• Generating new ligand-binding RNAs by affinity maturation and disintegration of allosteric ribozymes.

  2001cited by this paper
• Mechanism of intrinsic transcription termination and antitermination.

  1999cited by this paper
• The mechanism of intrinsic transcription termination.

  1999cited by this paper
• Relationship between internucleotide linkage geometry and the stability of RNA.

  1999cited by this paper

• NAND Hybrid Riboswitch Design by Deep Batch Bayesian Optimization

  2025cites this paper
• Variation in phylogenetic tendencies of contiguous riboswitches

  2025cites this paper
• TaRTLEt: Transcriptionally-active Riboswitch Tracer Leveraging Edge deTection

  2025influential citation
• Bifidobacterium bifidum SAM-VI Riboswitch Conformation Change Requires Peripheral Helix Formation

  2024cites this paper
• Construction of Riboswitches for Screening Antibacterial Agents from Forest Plants

  2024cites this paper
• Flipping the script: Understanding riboswitches from an alternative perspective

  2024cites this paper
• Knotty is nice: Metabolite binding and RNA-mediated gene regulation by the preQ1 riboswitch family

  2024cites this paper
• Riboswitches, from cognition to transformation

  2023cites this paper
• A spermidine riboswitch class in bacteria exploits a close variant of an aptamer for the enzyme cofactor S-adenosylmethionine

  2023cites this paper
• Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets

  2023cites this paper
• Architectures and complex functions of tandem riboswitches

  2022cites this paper
• Entropy Driving the Mg2+-Induced Folding of TPP Riboswitch RNA.

  2022cites this paper
• Entropy-driven Mg 2+ -induced folding of TPP riboswitch RNA

  2022cites this paper
• Advances in riboswitch-based biosensor as food samples detection tool.

  2022cites this paper
• High content design of riboswitch biosensors: All-around rational module-by-module design.

  2022cites this paper
• Lithium-sensing riboswitch classes regulate expression of bacterial cation transporter genes

  2022cites this paper
• Structure‐Switching RNAs: From Gene Expression Regulation to Small Molecule Detection

  2021cites this paper
• Structural distinctions between NAD+ riboswitch domains 1 and 2 determine differential folding and ligand binding

  2020cites this paper
• Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch

  2020cites this paper
• Imaginary Ribozymes.

  2020cites this paper
• Riboswitches as Sensor Entities

  2019cites this paper
• Evidence that the nadA motif is a bacterial riboswitch for the ubiquitous enzyme cofactor NAD+

  2019cites this paper
• A tetracycline-dependent ribozyme switch allows conditional induction of gene expression in Caenorhabditis elegans

  2019cites this paper
• Small Molecule‐Responsive RNA Switches (Bacteria): Important Element of Programming Gene Expression in Response to Environmental Signals in Bacteria

  2018cites this paper
• Development of photo-responsive synthetic RNA devices

  2018cites this paper
• Genome-wide Analysis of the Distribution of Riboswitches and Function Analyses of the Corresponding Downstream Genes in Prokaryotes

  2018cites this paper
• Synthetic Biology of Small RNAs and Riboswitches

  2018cites this paper
• Bacterial riboswitches and RNA thermometers: Nature and contributions to pathogenesis

  2018cites this paper
• Recent advances and future trends of riboswitches: attractive regulatory tools

  2018cites this paper
• Design , construction , and characterization of the ysgr minimal codon fab library for chaperone-assisted rna crystallography 2012

  2018cites this paper
• Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions

  2017cites this paper
• Long-Range Interactions in Riboswitch Control of Gene Expression.

  2017cites this paper
• Thiamine Assays—Advances, Challenges, and Caveats

  2017cites this paper
• Engineering and In Vivo Applications of Riboswitches.

  2017cites this paper
• Simulating Intestinal Growth Conditions Enhances Toxin Production of Enteropathogenic Bacillus cereus

  2017cites this paper
• Genomic, transcriptomic and phenotypic analysis of the plant growth promoting and phosphate solubilizing Paenibacillus riograndensis SBR5

  2017cites this paper
• The lost language of the RNA World

  2017cites this paper
• Bacillus anthracis purine riboswitches: functional characterization and screening for novel ligands

  2017cites this paper
• Synthetic Riboswitches: From Plug and Pray toward Plug and Play.

  2017cites this paper
• In Vivo Behavior of the Tandem Glycine Riboswitch in Bacillus subtilis

  2017cites this paper
• Riboswitches as Potential Targets for the Development of Anti-Biofilm Drugs.

  2017cites this paper
• Fluorescence-Based Strategies to Investigate the Structure and Dynamics of Aptamer-Ligand Complexes

  2016cites this paper
• Applicability of a computational design approach for synthetic riboswitches

  2016cites this paper
• Exploring the modular nature of riboswitches and RNA thermometers

  2016cites this paper
• Modular arrangement of regulatory RNA elements

  2016cites this paper
• Insights into the Co-Evolution of Ribosomal Protein S15 with its Regulatory RNAs

  2016cites this paper
• Biophysical Approaches to Bacterial Gene Regulation by Riboswitches.

  2016cites this paper
• Non-Equilibrium Capillary Electrophoresis of Equilibrium Mixtures-Based Affinity Separation and Selective Enrichment of a Long-Length DNA Aptamer

  2016cites this paper
• Label-free and Aptamer-based Surface Enhanced Raman Spectroscopy for Detection of Food Contaminants

  2016cites this paper
• Biophysics of Infection

  2016cites this paper
• Singlet glycine riboswitches bind ligand as well as tandem riboswitches

  2016cites this paper
• Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter

  2016cites this paper
• Rational design, re-engineering and characterisation of tetrahydrofolate riboswitches in bacteria

  2015cites this paper
• Computational Design of Small Molecule Binding Proteins

  2015cites this paper
• From genome to toxicity: a combinatory approach highlights the complexity of enterotoxin production in Bacillus cereus

  2015cites this paper
• Design criteria for synthetic riboswitches acting on transcription

  2015cites this paper
• Kinetic and Equilibrium Binding Characterization of Aptamers to Small Molecules using a Label-Free, Sensitive, and Scalable Platform

  2014cites this paper
• Exploration of structure-switching in the design of aptamer biosensors.

  2014cites this paper
• GAATT CTAAT ACGAC TCACT ATAGG CCTGC CACGC TCCGA CGCTA TCCAC TAGGG GTGCT TGTTG TGCTG AGAGA GGAAT AATCC TTAAC CCTTA TAACA CCTGA TCTAG GTAAT ACTAG

  2014cites this paper
• Development of RNA Sensors for Cyclic Dinucleotide Second Messengers in Bacteria

  2014cites this paper
• Computational analysis of riboswitch-based regulation.

  2014cites this paper
• Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy

  2014cites this paper
• A general strategy to create RNA aptamer sensors using "regulated" graphene oxide adsorption.

  2014cites this paper
• The promise of riboswitches as potential antibacterial drug targets.

  2014cites this paper
• Dual posttranscriptional regulation via a cofactor-responsive mRNA leader.

  2013cites this paper
• Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches.

  2013cites this paper
• RNA-mediated Control of Bacterial Gene Expression: Role of Regulatory non-Coding RNAs

  2013cites this paper
• A personal perspective on chemistry-driven RNA research.

  2013cites this paper
• Folding and ligand recognition of the TPP riboswitch aptamer at single-molecule resolution

  2013cites this paper
• Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing

  2013cites this paper
• De novo design of a synthetic riboswitch that regulates transcription termination

  2012cites this paper
• Protein and RNA engineering to customize microbial molecular reporting

  2012cites this paper
• Challenges and Opportunities for Small Molecule Aptamer Development

  2012cites this paper
• Targeting RNA Structures with Multivalent Branched Peptide Libraries

  2012cites this paper
• Riboswitches and the RNA world.

  2012cites this paper
• Fonctions de nouveaux ARN non codant dans la régulation de l'expression des gènes chez Staphylococcus aureus : adaptation à l'environnement et virulence

  2012cites this paper
• Riborégulateurs répondant aux fluorures, transporteurs de fluorure et procédés d'utilisation

  2012cites this paper
• Stabilizing structure-switching signaling RNA aptamers by entrapment in sol-gel derived materials for solid-phase assays.

  2012cites this paper
• Design, construction, and characterization of the ysgr minimal codon fab library for chaperone-assisted rna crystallography

  2012cites this paper
• Orthogonal riboswitches for tuneable coexpression in bacteria.

  2012cites this paper
• The Engineering of Riboswitch-Based Sensors of Small Molecules in Bacteria and Their Application in the Study of Vitamin B12 Biology

  2011cites this paper
• Bacterial aptamers that selectively bind glutamine

  2011cites this paper
• Prospects for riboswitch discovery and analysis.

  2011cites this paper
• Structural basis of cooperative ligand binding by the glycine riboswitch.

  2011cites this paper
• Identification of a tertiary interaction important for cooperative ligand binding by the glycine riboswitch.

  2011cites this paper
• Telomerase: an RNP enzyme synthesizes DNA.

  2011cites this paper
• Study of complex RNA function modulated by small molecules: the development of RNA directed small molecule library and probing the S-adenosyl methionine discrimination between on and off conformational states of the SAM-I riboswitch

  2011cites this paper
• Emerging applications of riboswitches in chemical biology.

  2010cites this paper
• An Allosteric Self-Splicing Ribozyme Triggered by a Bacterial Second Messenger

  2010cites this paper
• A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate.

  2010cites this paper
• Riboswitches That Sense Cyclic Di-GMP

  2010cites this paper
• Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

  2010cites this paper
• RNA-mediated regulation in bacteria: from natural to artificial systems.

  2010cites this paper
• Bacterial Riboswitch Discovery and Analysis

  2010cites this paper
• A synthetic riboswitch with chemical band-pass response.

  2010cites this paper
• A general approach to the construction of structure-switching reporters from RNA aptamers.

  2010cites this paper
• Ligand Recognition And Conformational Dynamics Of Sam-Binding Riboswitches

  2010cites this paper
• 6.21 – Riboswitches

  2010cites this paper
• Engineering input/output nodes in prokaryotic regulatory circuits.

  2010cites this paper
• Efficient Design Strategy for Whole-Cell and Cell-Free Biosensors based on Engineered Riboswitches

  2009influential citation