Genomic Studies of Local Adaptation in Natural Plant Populations.

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Journal of Heredity

• Publication date

  2017-12-21

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/jhered/esx091PMID 29045754
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Phenological shifts of native and invasive species under climate change: insights from the Boechera–Lythrum model

  2017cited by this paper
• An Expanded View of Complex Traits: From Polygenic to Omnigenic.

  2017cited by this paper
• Plastic and Evolved Responses to Global Change: What Can We Learn from Comparative Transcriptomics?

  2016cited by this paper
• Constraints to and conservation implications for climate change adaptation in plants

  2016cited by this paper
• Epigenetics in ecology and evolution: what we know and what we need to know

  2016cited by this paper
• Whole-transcriptome response to water stress in a California endemic oak, Quercus lobata

  2016cited by this paper
• Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions

  2016cited by this paper
• Home-field advantage? evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis

  2016cited by this paper
• The multivariate association between genomewide DNA methylation and climate across the range of Arabidopsis thaliana

  2016cited by this paper
• Phenological shifts of native and invasive species under climate change: insights from the Boechera-Lythrum model.

  2016cited by this paper
• First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae)

  2016cited by this paper
• Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri

  2016cited by this paper
• Transcriptome sequencing reveals population differentiation in gene expression linked to functional traits and environmental gradients in the South African shrub Protea repens.

  2016cited by this paper
• Convergent local adaptation to climate in distantly related conifers

  2016cited by this paper
• Early life stages contribute strongly to local adaptation in Arabidopsis thaliana

  2016cited by this paper
• The challenge of separating signatures of local adaptation from those of isolation by distance and colonization history: The case of two white pines

  2016cited by this paper
• Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata.

  2016cited by this paper
• Detection vs. selection: integration of genetic, epigenetic and environmental cues in fluctuating environments.

  2016cited by this paper
• Species‐wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients

  2016cited by this paper
• Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation.

  2015cited by this paper
• DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

  2015cited by this paper
• Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks

  2015cited by this paper
• Common garden experiments in the genomic era: new perspectives and opportunities

  2015cited by this paper
• A practical guide to environmental association analysis in landscape genomics

  2015cited by this paper
• Genome-wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa.

  2014cited by this paper
• Advances and limits of using population genetics to understand local adaptation.

  2014cited by this paper
• Genome‐wide scans detect adaptation to aridity in a widespread forest tree species

  2014cited by this paper
• Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana

  2014cited by this paper
• Using genomics to characterize evolutionary potential for conservation of wild populations

  2014cited by this paper
• Climate change, adaptation, and phenotypic plasticity: the problem and the evidence

  2014cited by this paper
• Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

  2014cited by this paper
• QTL mapping of freezing tolerance: links to fitness and adaptive trade‐offs

  2014cited by this paper
• Two are better than one: combining landscape genomics and common gardens for detecting local adaptation in forest trees

  2014cited by this paper
• Geographical and environmental gradients shape phenotypic trait variation and genetic structure in Populus trichocarpa.

  2014cited by this paper
• Ecological epigenetics.

  2014cited by this paper
• An evaluation of seed zone delineation using phenotypic and population genomic data on black alder Alnus glutinosa

  2014cited by this paper
• A Population Genetic Signal of Polygenic Adaptation

  2013cited by this paper
• Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations

  2013cited by this paper
• Potential for evolutionary responses to climate change – evidence from tree populations

  2013cited by this paper
• Epigenetic regulation of adaptive responses of forest tree species to the environment

  2013cited by this paper
• Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment

  2013cited by this paper
• Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

  2013cited by this paper
• Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana

  2013cited by this paper
• A practical guide to measuring local adaptation.

  2013cited by this paper
• Ecological genomics of local adaptation

  2013cited by this paper
• How epigenetic mutations can affect genetic evolution: model and mechanism.

  2013cited by this paper
• Putting the landscape into the genomics of trees: approaches for understanding local adaptation and population responses to changing climate

  2013cited by this paper
• Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

  2012cited by this paper
• Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions[W][OA]

  2012cited by this paper
• Genetics of climate change adaptation.

  2012cited by this paper
• Epigenetic variation: origin and transgenerational inheritance.

  2012cited by this paper
• Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation.

  2012cited by this paper
• Evolutionary and ecological responses to anthropogenic climate change: update on anthropogenic climate change.

  2012cited by this paper
• Gradient forests: calculating importance gradients on physical predictors.

  2012cited by this paper
• Reciprocal transplants demonstrate strong adaptive differentiation of the model organism Arabidopsis thaliana in its native range.

  2012cited by this paper
• Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

  2011cited by this paper
• A Map of Local Adaptation in Arabidopsis thaliana

  2011cited by this paper
• Molecular spandrels: tests of adaptation at the genetic level

  2011cited by this paper
• The Genomic Basis of Local Climatic Adaptation

  2011cited by this paper
• Evolutionary genetics of plant adaptation.

  2011cited by this paper
• Adaptation to Climate Across the Arabidopsis thaliana Genome

  2011cited by this paper
• Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

  2011cited by this paper
• Genomics and the future of conservation genetics

  2010cited by this paper
• Challenges and opportunities of genetic approaches to biological conservation.

  2010cited by this paper
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010cited by this paper
• Adaptation genomics: the next generation.

  2010cited by this paper
• Variance component model to account for sample structure in genome-wide association studies

  2010cited by this paper
• Patterns of Population Structure and Environmental Associations to Aridity Across the Range of Loblolly Pine (Pinus taeda L., Pinaceae)

  2010cited by this paper
• Using Environmental Correlations to Identify Loci Underlying Local Adaptation

  2010cited by this paper
• Molecular Approaches in Natural Resource Conservation and Management: Association genetics, population genomics, and conservation: Revealing the genes underlying adaptation in natural populations of plants and animals

  2010cited by this paper
• The population genomics of plant adaptation.

  2010cited by this paper
• Structuring and extracting knowledge for the support of hypothesis generation in molecular biology

  2009cited by this paper
• Detecting loci under selection in a hierarchically structured population

  2009cited by this paper
• Genomics of growth traits in forest trees.

  2009cited by this paper
• RNA-Seq: a revolutionary tool for transcriptomics

  2009cited by this paper
• WGCNA: an R package for weighted correlation network analysis

  2008cited by this paper
• A Meta-Analysis of Local Adaptation in Plants

  2008cited by this paper
• Adaptation, migration or extirpation: climate change outcomes for tree populations

  2008cited by this paper
• Gene Flow and Local Adaptation in Trees

  2007cited by this paper
• The speed of ecological speciation.

  2007cited by this paper
• Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment

  2007cited by this paper
• Forest-tree population genomics and adaptive evolution.

  2006cited by this paper
• Natural Genetic Variation of Freezing Tolerance in Arabidopsis[W][OA]

  2006cited by this paper
• Principal components analysis corrects for stratification in genome-wide association studies

  2006cited by this paper
• EVOLUTIONARY RESPONSES TO CHANGING CLIMATE

  2005cited by this paper
• Climatic adaptation of trees: rediscovering provenance tests

  2004cited by this paper
• Conceptual issues in local adaptation

  2004cited by this paper
• Constraint to Adaptive Evolution in Response to Global Warming

  2001cited by this paper
• Two hundred years genecology.

  1971cited by this paper

• Climate drives plasticity and genetic adaptation in apple trees

  2026cites this paper
• Transcriptome wide evidence of interspecies differences in the regulation of photoprotection between chilling-tolerant and -sensitive mangrove species.

  2026cites this paper
• A global synthesis of research on plant local adaptation to climate change: plant diversity, methodological approaches and future roadmap

  2025cites this paper
• Genome-wide SNP diversity in natural and cultivated populations informs restoration ecology with three Calamagrostis species from the Northwest Territories of Canada

  2025cites this paper
• Adaptive Potential and Genomic Vulnerability of Keystone Forest Tree Species to Climate Change: A Case Study in Scots Pine

  2025cites this paper
• Genetic diversity analysis of wild tea plant resources in Chongzuo based on phenotypic traits and SSR molecular markers

  2025cites this paper
• Population structure analysis of eight goat breeds based on super-genotyping-by-sequencing.

  2025cites this paper
• Genomic insights into the local adaptation of spontaneously occurring populations of olive trees (Olea europaea ssp. europaea var. sylvestris) in the Mediterranean Basin

  2025cites this paper
• Variation in the Molecular Phenotype of βglu‐1, an Insect Defence‐Related Beta‐Glucosidase Gene, in Two Transcontinental Picea Species

  2025cites this paper
• Suturing fragmented landscapes: Mosaic hybrid zones in plants may facilitate ecosystem resiliency

  2025cites this paper
• Characterizing genetic adaptations and plastic stress responses within a transcontinental North American keystone species

  2025cites this paper
• Life-history trade-offs explain local adaptation in Arabidopsis thaliana

  2025cites this paper
• Does local adaptation influence thermal responses in red coral populations across depth gradients? Transcriptomic insights for effective conservation

  2025cites this paper
• The role of mitotype variation and positive epistasis in trait differences between Saccharomyces species

  2025cites this paper
• Genomic Signatures of Environmental Adaptation in Castanopsis hainanensis (Fagaceae)

  2025cites this paper
• Pan-Genome Analysis Reveals Local Adaptation to Climate Driven by Introgression in Oak Species

  2025cites this paper
• Analysis of Genetic Structure in Winterberry (Ilex verticillata) Using Genotyping-by-Sequencing

  2025cites this paper
• Evolution of phenotypic variance provides insights into the genetic basis of adaptation.

  2024cites this paper
• Geography and the Environment Shape the Landscape Genetics of the Vulnerable Species Ulmus lamellosa in Northern China

  2024cites this paper
• The chromosome-level genome assembly of an endangered herb Bergenia scopulosa provides insights into local adaptation and genomic vulnerability under climate change

  2024cites this paper
• Plant conservation in the age of genome editing: opportunities and challenges

  2024cites this paper
• Testing source elevation versus genotype as predictors of sugar pine performance in a post-fire restoration planting.

  2024cites this paper
• Integrating evolutionary genomics of forest trees to inform future tree breeding amid rapid climate change

  2024cites this paper
• Common‐garden study of introgression at loci associated with traits adaptive to coastal environment from Quercus dentata into Quercus mongolica var. crispula

  2024cites this paper
• Local adaptation of Pinus leiophylla under climate and land use change models in the Avocado Belt of Michoacán

  2024influential citation
• Comparison of Conservation Strategies for California Channel Island Oak (Quercus tomentella) Using Climate Suitability Predicted From Genomic Data

  2024cites this paper
• Oak genomics for nature-based solutions: shaping future forests and resilient landscapes in Canada

  2024cites this paper
• Genotype-by-environment interactions and local adaptation shape selection in the US National Chip Processing Trial

  2024cites this paper
• Common garden experiments and SNP genotyping at the extremes of a steep precipitation gradient suggest local adaptation in a Patagonian conifer

  2024cites this paper
• Genomic insights into local adaptation and vulnerability of Quercus longinux to climate change

  2024cites this paper
• Seascapes Shaped the Local Adaptation and Population Structure of South China Coast Yellowfin Seabream (Acanthopagrus latus)

  2023cites this paper
• Neutral and adaptive genetic diversity in plants: An overview

  2023influential citation
• A pathogen's spatial range is not constrained by geographical features in the flax rust pathosystem

  2023cites this paper
• Species-specific epigenetic responses to drought stress of two sympatric oak species reflect their ecological preferences

  2023cites this paper
• Ecological and evolutionary drivers of phenotypic and genetic variation in the European crabapple (Malus sylvestris (L.) Mill.), a wild relative of the cultivated apple.

  2023cites this paper
• Geographical Variation Reveals Strong Genetic Differentiation in Cryptomeria japonica var. sinensis

  2023cites this paper
• Tropical forest loss and geographic location drive the functional genomic diversity of an endangered palm tree

  2023cites this paper
• Adaptive divergence and genetic vulnerability of relict species under climate change: a case study of Pterocarya macroptera

  2023cites this paper
• Evolutionary Processes Shaping Postglacial Gene Pools of High-Altitude Forests: Evidence from the Endemic Eucalypts of Tasmania

  2023cites this paper
• Attrition and the design of metacollections for ex situ plant conservation

  2023cites this paper
• A review on Q ST – F ST comparisons of seed plants: Insights for conservation

  2023cites this paper
• Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors

  2023cites this paper
• The genomic and epigenetic footprint of local adaptation to variable climates in kiwifruit

  2023cites this paper
• Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology

  2023cites this paper
• Pollution gradient leads to local adaptation and small-scale spatial variability of communities and functions in an urban marine environment.

  2022cites this paper
• Adaptive potential of Coffea canephora from Uganda in response to climate change

  2022cites this paper
• Landscape Genomics in Tree Conservation Under a Changing Environment

  2022cites this paper
• Class III Peroxidases in Response to Multiple Abiotic Stresses in Arabidopsis thaliana Pyrenean Populations

  2022cites this paper
• Effect of temperature and osmotic stress during somatic embryogenesis on phenology and physiology of abies nordmanniana emblings

  2022cites this paper
• Ecological and evolutionary drivers of phenotypic and genetic variation in the European crabapple (Malus sylvestris (L.) Mill.), a wild relative of the cultivated apple

  2022cites this paper
• Evolutionary Ecology of Plant-Arthropod Interactions in Light of the “Omics” Sciences: A Broad Guide

  2022cites this paper
• Traces of Genetic but Not Epigenetic Adaptation in the Invasive Goldenrod Solidago canadensis Despite the Absence of Population Structure

  2022cites this paper
• Ecological and genomic vulnerability to climate change across native populations of Robusta coffee (Coffea canephora)

  2022cites this paper
• Genetic basis of growth reaction to drought stress differs in contrasting high‐latitude treeline ecotones of a widespread conifer

  2022cites this paper
• Multiomics Molecular Research into the Recalcitrant and Orphan Quercus ilex Tree Species: Why, What for, and How

  2022influential citation
• From common gardens to candidate genes: exploring local adaptation to climate in red spruce

  2022cites this paper
• Impact of in Situ Simulated Climate Change on Communities and Non-Indigenous Species: Two Climates, Two Responses

  2022cites this paper
• The roles of divergent and parallel molecular evolution contributing to thermal adaptive strategies in trees

  2022influential citation
• Climatic origin of provenances of Corymbia calophylla affects canker disease susceptibility, caused by Quambalaria coyrecup , and interactions with drought stress

  2022cites this paper
• Gene family evolution and natural selection signatures in Datura spp. (Solanaceae)

  2022cites this paper
• Ecological and evolutionary drivers of phenotypic and genetic variation in the European

  2022cites this paper
• Evolution of phenotypic variance provides insights into the genetic basis of adaptation

  2021cites this paper
• Can Forest Trees Cope with Climate Change?—Effects of DNA Methylation on Gene Expression and Adaptation to Environmental Change

  2021cites this paper
• Plant Conservation Practitioners Can Benefit from Neutral Genetic Diversity

  2021cites this paper
• Evaluating the accuracy of genomic prediction for the management and conservation of relictual natural tree populations

  2021cites this paper
• Seed provenance, thermoperiod, and photoperiod affect low water potential tolerance during seed germination of the multipurpose exotic tree Prosopis juliflora

  2021cites this paper
• Linked selection shapes the landscape of genomic variation in three oak species.

  2021cites this paper
• Locally adapted oak populations along an elevation gradient display different molecular strategies to regulate bud phenology

  2021cites this paper
• Contrasting effects of local environment and grazing pressure on the genetic diversity and structure of Artemisia frigida

  2021cites this paper
• Into the weeds: new insights in plant stress.

  2021cites this paper
• Within-population genotype – Soil interactions drive phenotypic variation in a recovering fir forest from central Mexico

  2021cites this paper
• Transcriptomic responses and physiological changes to cold stress among natural populations provide insights into local adaptation of weeping forsythia.

  2021cites this paper
• Using precision phenotyping to inform de novo domestication

  2021cites this paper
• Scale‐dependent signatures of local adaptation in a foundation tree species

  2021cites this paper
• Genetic characteristics and QTL analysis of the soluble sugar content in ripe tomato fruits

  2021cites this paper
• Connecting tree‐ring phenotypes, genetic associations and transcriptomics to decipher the genomic architecture of drought adaptation in a widespread conifer

  2021cites this paper
• Evolution of phenotypic variance provides insights into the genetic basis of 1 adaption 2

  2021cites this paper
• Evaluating the accuracy of genomic prediction for the management and conservation of relictual natural tree populations

  2021cites this paper
• Forage Performance and Detection of Marker Trait Associations with Potential for Napier Grass (Cenchrus purpureus) Improvement

  2020cites this paper
• A paradigm shift in our view of species drives current trends in biological classification

  2020cites this paper
• Intraspecific differentiation: Implications for niche and distribution modelling

  2020cites this paper
• Influence of Maternal Habitat on Salinity Tolerance of Zygophyllum coccineum with Regard to Seed Germination and Growth Parameters

  2020cites this paper
• Combining climatic and genomic data improves range-wide tree height growth prediction in a forest tree

  2020cites this paper
• Local Adaptation in the Interior Spruce Hybrid Complex

  2020cites this paper
• Plant adaptation to climate change—Where are we?

  2020cites this paper
• Regarding the F-word: the effects of data Filtering on inferred genotype-environment associations

  2020cites this paper
• Spatial, climate and ploidy factors drive genomic diversity and resilience in the widespread grass Themeda triandra

  2020cites this paper
• Genomic and phenotypic divergence unveil microgeographic adaptation in the Amazonian hyperdominant tree Eperua falcata Aubl. (Fabaceae).

  2020cites this paper
• The interaction of clonality, breeding system and genomics for a highly threatened plant species and the management implications

  2020cites this paper
• Contrasted patterns of local adaptation to climate change across the range of an evergreen oak, Quercus aquifolioides

  2020cites this paper
• Genetic structure among morphotypes of the endangered Brazilian palm Euterpe edulis Mart (Arecaceae)

  2020cites this paper
• The semantics of evolutionary adaptation: clarification and evaluation

  2020influential citation
• Examining the molecular mechanisms contributing to the success of an invasive species across different ecosystems

  2020cites this paper
• Small spaces, big impacts: contributions of micro-environmental variation to population persistence under climate change

  2020cites this paper
• In the presence of population structure: From genomics to candidate genes underlying local adaptation

  2020cites this paper
• Standing genomic variation within coding and regulatory regions contributes to the adaptive capacity to climate in a foundation tree species

  2019cites this paper
• Spatial, climate, and ploidy factors drive genomic diversity and resilience in the widespread grass Themeda triandra

  2019cites this paper
• The Effects of Epistasis and Pleiotropy on Genome-Wide Scans for Adaptive Outlier Loci.

  2019cites this paper
• Evaluating genomic data for management of local adaptation in a changing climate: A lodgepole pine case study

  2019cites this paper
• Climatic niche predicts the landscape structure of locally adaptive standing genetic variation

  2019cites this paper