The genomic and phenotypic diversity of Schizosaccharomyces pombe

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Nature Genetics

• Publication date

  2015-02-09

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ng.3215PMID 25665008PMCID PMC4645456
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Contributo alla ecologia dei lieviti Schizosaccharomyces sulle

  2016cited by this paper
• A genomic Multiprocess survey of machineries that control and link cell shape, microtubule organization, and cell-cycle progression.

  2014cited by this paper
• Population Genomics of the Fission Yeast Schizosaccharomyces pombe

  2014cited by this paper
• Genome rearrangements and pervasive meiotic drive cause hybrid infertility in fission yeast

  2014cited by this paper
• Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast

  2014cited by this paper
• Protein determinants of meiotic DNA break hot spots.

  2013cited by this paper
• Integration Profiling of Gene Function With Dense Maps of Transposon Integration

  2013cited by this paper
• Genomic Sequence Diversity and Population Structure of Saccharomyces cerevisiae Assessed by RAD-seq

  2013cited by this paper
• Epistasis and quantitative traits: using model organisms to study gene–gene interactions

  2013cited by this paper
• Genome architecture is a selectable trait that can be maintained by antagonistic pleiotropy

  2013cited by this paper
• RetroSeq: transposable element discovery from next-generation sequencing data

  2013cited by this paper
• ACG: rapid inference of population history from recombining nucleotide sequences

  2013cited by this paper
• The Effect of Genomic Inversions on Estimation of Population Genetic Parameters from SNP Data

  2013cited by this paper
• phylogenetics with

  2012cited by this paper
• Improved linear mixed models for genome-wide association studies

  2012cited by this paper
• Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

  2012cited by this paper
• Inference of Population Structure using Dense Haplotype Data

  2012cited by this paper
• Efficient de novo assembly of large genomes using compressed data structures.

  2012cited by this paper
• Deciphering the Transcriptional-Regulatory Network of Flocculation in Schizosaccharomyces pombe

  2012cited by this paper
• Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses.

  2012cited by this paper
• Advances in Quantitative Trait Analysis in Yeast

  2012cited by this paper
• Improved heritability estimation from genome-wide SNPs.

  2012cited by this paper
• Transposon integration enhances expression of stress response genes

  2012cited by this paper
• DELLY: structural variant discovery by integrated paired-end and split-read analysis

  2012cited by this paper
• Accurate model selection of relaxed molecular clocks in bayesian phylogenetics.

  2012cited by this paper
• Using MCL to extract clusters from networks.

  2012cited by this paper
• Bayesian Phylogenetics with BEAUti and the BEAST 1.7

  2012cited by this paper
• Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads.

  2011cited by this paper
• Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

  2011cited by this paper
• A Geographically Diverse Collection of Schizosaccharomyces pombe Isolates Shows Limited Phenotypic Variation but Extensive Karyotypic Diversity

  2011cited by this paper
• A framework for variation discovery and genotyping using next-generation DNA sequencing data

  2011cited by this paper
• De novo assembly and genotyping of variants using colored de Bruijn graphs

  2011cited by this paper
• Trait Variation in Yeast Is Defined by Population History

  2011cited by this paper
• Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons

  2010cited by this paper
• Fast and accurate long-read alignment with Burrows–Wheeler transform

  2010cited by this paper
• High-throughput sequencing of retrotransposon integration provides a saturated profile of target activity in Schizosaccharomyces pombe.

  2010cited by this paper
• grofit: Fitting Biological Growth Curves with R

  2010cited by this paper
• Detecting positive and purifying selection at synonymous sites in yeast and worm.

  2010cited by this paper
• Sequence analysis Advance Access publication June 7, 2011 The variant call format and VCFtools

  2010cited by this paper
• BLAST+: architecture and applications

  2009cited by this paper
• Fast model-based estimation of ancestry in unrelated individuals.

  2009cited by this paper
• Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

  2009cited by this paper
• Rapidly regulated genes are intron poor.

  2008cited by this paper
• Population genomics of domestic and wild yeasts

  2008cited by this paper
• PLINK: a tool set for whole-genome association and population-based linkage analyses.

  2007cited by this paper
• Exploiting large scale computing to construct high resolution linkage disequilibrium maps of the human genome

  2007cited by this paper
• A Discrete Class of Intergenic DNA Dictates Meiotic DNA Break Hotspots in Fission Yeast

  2007cited by this paper
• Probabilistic quotient normalization as robust method to account for dilution of complex biological mixtures. Application in 1H NMR metabonomics.

  2006cited by this paper
• A unified mixed-model method for association mapping that accounts for multiple levels of relatedness

  2006cited by this paper
• Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

  2006cited by this paper
• Genome-wide DNA polymorphism analyses using VariScan

  2006cited by this paper
• Evidence for Domesticated and Wild Populations of Saccharomyces cerevisiae

  2005cited by this paper
• Theoretical and practical advances in genome halving

  2004cited by this paper
• MUSCLE: multiple sequence alignment with high accuracy and high throughput.

  2004cited by this paper
• Yeast ecology of Kombucha fermentation.

  2004cited by this paper
• Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe.

  2003cited by this paper
• Global transcriptional responses of fission yeast to environmental stress.

  2003cited by this paper
• A history of beer and brewing

  2003cited by this paper
• Physiological diversity and trehalose accumulation in Schizosaccharomyces pombe strains isolated from spontaneous fermentations during the production of the artisanal Brazilian cachaça.

  2002cited by this paper
• The first linkage disequilibrium (LD) maps: Delineation of hot and cold blocks by diplotype analysis

  2002cited by this paper
• The genome sequence of Schizosaccharomyces pombe

  2002cited by this paper
• Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.

  1993cited by this paper
• Mitochondrial growth and DNA synthesis occur in the absence of nuclear DNA replication in fission yeast.

  1990cited by this paper

• The power of many: when genetics met yeasts and high-throughput.

  2026cites this paper
• Bro1-Mediated Trafficking Couples TOR Signalling to Cellular Metabolism and Longevity

  2026cites this paper
• Adaptation of eukaryotic membrane homeostasis to species-specific cellular lipid landscapes

  2025cites this paper
• Evolutionary rewiring of host metabolism and interferon signalling by SARS-CoV-2 variants

  2025cites this paper
• Contrasting mutation patterns in haploid and diploid cells from two yeast species

  2025cites this paper
• Context-dependent activation and evolutionary buffering of a mating pheromone in fission yeast

  2025cites this paper
• Genetic and phenotypic insights into Cyberlindnera jadinii as a promising yeast for industrial biotechnology

  2025cites this paper
• Species-specific production of nitrogen signaling factors that mediate cell-cell communication in yeast.

  2025cites this paper
• Contrasting mutation patterns in haploid and diploid cells from two yeast species.

  2025cites this paper
• Characterisation of a sulphite-tolerant Schizosaccharomyces pombe strain: potential as spoilage in oversulphited must and as starter cultures in wine

  2025cites this paper
• Homologous recombination mutant lethality differs between h− and h+ Schizosaccharomyces pombe strains due to mat1 heterochromatin

  2025cites this paper
• Transposon Removal Reveals Their Adaptive Fitness Contribution

  2024influential citation
• A meiotic driver hijacks an epigenetic reader to disrupt mitosis in noncarrier offspring

  2024cites this paper
• Structure-guided evolutionary analysis of interactome network rewiring at single residue resolution in yeasts.

  2024cites this paper
• Evolutionary Modes of wtf Meiotic Driver Genes in Schizosaccharomyces pombe

  2024influential citation
• Whole‐Genome Sequencing and Phenotyping Reveal Specific Adaptations of Lachancea thermotolerans to the Winemaking Environment

  2024cites this paper
• Mathematical model for the role of multiple pericentromeric repeats on heterochromatin assembly

  2024cites this paper
• New species, genome assemblies, and tools shed fresh light on fission yeasts

  2024cites this paper
• Reinstatement of the fission yeast species Schizosaccharomyces versatilis Wickerham et Duprat, a sibling species of Schizosaccharomyces japonicus

  2024cites this paper
• Cross-feeding promotes heterogeneity within yeast cell populations

  2024cites this paper
• Insights into the Genomic and Phenotypic Landscape of the Oleaginous Yeast Yarrowia lipolytica

  2023cites this paper
• Genetic and environmental determinants of multicellular-like phenotypes in fission yeast

  2023influential citation
• Engineering heterothallic strains in fission yeast

  2023influential citation
• Subtelomeres: hotspots of genome variation.

  2023cites this paper
• Proliferation and dissemination of killer meiotic drive loci.

  2023cites this paper
• Schizosaccharomyces lindneri sp. nov., a fission yeast occurring in honey

  2023cites this paper
• Self-compatibility in yeast is selected for reproductive assurance not population level compatibility.

  2023cites this paper
• The Fission Yeast Mating-Type Switching Motto: “One-for-Two” and “Two-for-One”

  2023cites this paper
• Pheromone Response and Mating Behavior in Fission Yeast

  2022cites this paper
• Enforcement of Postzygotic Species Boundaries in the Fungal Kingdom

  2022cites this paper
• On the Mechanistic Basis of Killer Meiotic Drive in Fungi.

  2022cites this paper
• Assessment of Spontaneous Fermentation and Non-Saccharomyces Sequential Fermentation in Verdicchio Wine at Winery Scale

  2022cites this paper
• Parasite Genotype Is a Major Predictor of Mortality from Visceral Leishmaniasis

  2022cites this paper
• The wtf meiotic driver gene family has unexpectedly persisted for over 100 million years

  2022cites this paper
• The natural diversity of the yeast proteome reveals chromosome-wide dosage compensation in aneuploids

  2022cites this paper
• Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces

  2022cites this paper
• Insights into the ecology of Schizosaccharomyces species in natural and artificial habitats

  2022cites this paper
• Yeasts from temperate forests

  2022cites this paper
• Genetic admixture increases phenotypic diversity in the nectar yeast Metschnikowia reukaufii

  2021cites this paper
• Candidates for Balancing Selection in Leishmania donovani Complex Parasites

  2021cites this paper
• The search for Schizosaccharomyces fission yeasts in environmental metatranscriptomes

  2021cites this paper
• Diverse mating phenotypes impact the spread of wtf meiotic drivers in Schizosaccharomyces pombe

  2021influential citation
• Transposon Extermination Reveals Their Adaptive Fitness Contribution

  2021cites this paper
• Molecular Mechanisms and Evolutionary Consequences of Spore Killers in Ascomycetes

  2021cites this paper
• Competition dynamics in long‐term propagations of Schizosaccharomyces pombe strain communities

  2021cites this paper
• Genome Comparisons of the Fission Yeasts Reveal Ancient Collinear Loci Maintained by Natural Selection

  2021cites this paper
• A rapidly reversible mutation generates subclonal genetic diversity and unstable drug resistance

  2021cites this paper
• R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

  2021cites this paper
• Genomic diversity, chromosomal rearrangements, and interspecies hybridization in the Ogataea polymorpha species complex

  2021cites this paper
• Reactivation of transposable elements following hybridization in fission yeast

  2021influential citation
• Fluorescence exclusion: a rapid, accurate and powerful method for measuring yeast cell volume

  2021cites this paper
• Functional profiling of long intergenic non-coding RNAs in fission yeast

  2021cites this paper
• Diverse mating phenotypes impact the spread of wtf meiotic drivers in S. pombe

  2021influential citation
• Recombination and biased segregation of mitochondrial genomes during crossing and meiosis of different Schizosaccharomyces pombe strains

  2021cites this paper
• High-Throughput, High-Precision Colony Phenotyping with Pyphe.

  2021cites this paper
• Clonal evolution of Candida albicans, Candida glabrata and Candida dubliniensis at oral niche level in health and disease

  2021cites this paper
• Genome-wide screens in yeast models towards understanding chronological lifespan regulation

  2021cites this paper
• Multiple targets of balancing selection in Leishmania donovani complex parasites

  2021cites this paper
• Novakomyces olei sp. nov., the First Member of a Novel Taphrinomycotina Lineage

  2021cites this paper
• The population genetics of ploidy change in unicellular fungi.

  2021cites this paper
• Repression of a large number of genes requires interplay between homologous recombination and HIRA

  2021cites this paper
• Mutation and selection explain why many eukaryotic centromeric DNA sequences are often A + T rich

  2021cites this paper
• Pyruvate kinase variant of fission yeast tunes carbon metabolism, cell regulation, growth and stress resistance

  2020cites this paper
• Complete sequences of Schizosaccharomyces pombe subtelomeres reveal multiple patterns of genome variation

  2020cites this paper
• Dramatically diverse Schizosaccharomyces pombe wtf meiotic drivers all display high gamete-killing efficiency

  2020cites this paper
• Adaptation to Industrial Stressors Through Genomic and Transcriptional Plasticity in a Bioethanol Producing Fission Yeast Isolate

  2020cites this paper
• The Population Genetics of Ploidy Change in Fungi

  2020cites this paper
• Pyphe: A python toolbox for assessing microbial growth and cell viability in high-throughput colony screens

  2020cites this paper
• The principles of cellular geometry scaling.

  2020cites this paper
• Rapidly reversible mutations generate subclonal genetic diversity and reversible drug resistance

  2020cites this paper
• Rapid & reversable mutations generate subclonal genetic diversity

  2020cites this paper
• Amino Acids Whose Intracellular Levels Change Most During Aging Alter Chronological Life Span of Fission Yeast

  2020influential citation
• Atypical meiosis can be adaptive in outcrossed Schizosaccharomyces pombe due to wtf meiotic drivers

  2020influential citation
• Pyphe, a python toolbox for assessing microbial growth and cell viability in high-throughput colony screens

  2020cites this paper
• Atypical meiosis can be adaptive in outcrossed S. pombe due to wtf meiotic drivers

  2020influential citation
• Understand the genomic diversity and evolution of fungal pathogen Candida glabrata by genome-wide analysis of genetic variations.

  2020cites this paper
• Mitochondrial respiration is required to provide amino acids during fermentative proliferation of fission yeast

  2020cites this paper
• New Insights Into Wine Yeast Diversities

  2019cites this paper
• Cellular geometry scaling ensures robust division site positioning

  2019cites this paper
• André Goffeau's imprinting on second generation yeast “genomologists”

  2019cites this paper
• A genome-wide analysis of carbon catabolite repression in Schizosaccharomyces pombe

  2019cites this paper
• Budding yeast centromeric DNA and A+T rich bacterial DNA can function as centromeres in the fission yeast Schizosaccharomyces pombe

  2019cites this paper
• R-loops and regulatory changes in chronologically ageing fission yeast cells drive non-random patterns of genome rearrangements

  2019cites this paper
• The evolution of peptide mating pheromones in fission yeast

  2019cites this paper
• The impacts of Schizosaccharomyces on winemaking

  2019cites this paper
• Schizosaccharomyces pombe and Lachancea thermotolerans: Joint Use as an Alternative to the Traditional Fermentations by Saccharomyces cerevisiae and Oenococcus oeni in Oenology

  2019cites this paper
• Intraspecific Diversity of Fission Yeast Mitochondrial Genomes

  2019influential citation
• Ancestral Admixture Is the Main Determinant of Global Biodiversity in Fission Yeast

  2019cites this paper
• The Influence of Non-Saccharomyces Species on Wine Fermentation Quality Parameters

  2019cites this paper
• A natural variant of the sole pyruvate kinase of fission yeast lowers glycolytic flux triggering increased respiration and oxidative-stress resistance but decreased growth

  2019cites this paper
• Adaptive divergence in fission yeast From experimental evolution to evolutionary genomics

  2019influential citation
• Tetrad analysis without tetrad dissection: Meiotic recombination and genomic diversity in the yeast Komagataella phaffii (Pichia pastoris)

  2019cites this paper
• Epigenetic gene silencing by heterochromatin primes fungal resistance

  2019cites this paper
• Centromere scission drives chromosome shuffling and reproductive isolation

  2019cites this paper
• Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris)

  2019cites this paper
• High Complexity and Degree of Genetic Variation in Brettanomyces bruxellensis Population

  2019cites this paper
• Renewable fuels and chemicals from the organic fraction of municipal solid waste

  2019cites this paper
• High-throughput chronological lifespan screening of the fission yeast deletion library using barcode sequencing

  2019cites this paper
• Mar 06, 2020 Comprehensive profiling of the fission yeast transcription start site activity during stress

  2019influential citation
• Physiological changes during cellular ageing in fission yeast drive non-random patterns of genome rearrangements

  2019cites this paper