Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Genetics

• Publication date

  2006-06-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1534/genetics.106.056259PMID 16585134PMCID PMC1526492
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• PIGY, a new plant envelope-class LTR retrotransposon

  2005cited by this paper
• Nuclear DNA amounts in angiosperms: progress, problems and prospects.

  2005cited by this paper
• Retrotransposon populations of Vicia species with varying genome size

  2005cited by this paper
• Molecular Basis of Evolutionary Events That Shaped the Hardness Locus in Diploid and Polyploid Wheat Species (Triticum and Aegilops)w⃞

  2005cited by this paper
• Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea.

  2004cited by this paper
• Microarray-based survey of repetitive genomic sequences in Vicia spp.

  2004cited by this paper
• What makes Grande1 retrotransposon different?

  2004cited by this paper
• Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

  2004cited by this paper
• Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions

  2004cited by this paper
• A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats.

  2004cited by this paper
• Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice.

  2004cited by this paper
• The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers

  2004cited by this paper
• Rapid Genome Divergence at Orthologous Low Molecular Weight Glutenin Loci of the A and Am Genomes of Wheat Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.011023.

  2003cited by this paper
• Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences.

  2003cited by this paper
• Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.

  2003cited by this paper
• Rapid Genome Divergence at Orthologous Low Molecular Weight Glutenin Loci of the A and A m Genomes of Wheat

  2003cited by this paper
• Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced

  2003influential reference
• Characterization of high-copy-number retrotransposons from the large genomes of the louisiana iris species and their use as molecular markers.

  2003cited by this paper
• CDD: a curated Entrez database of conserved domain alignments

  2003cited by this paper
• The long and short of siRNAs.

  2002cited by this paper
• PlantSat: a specialized database for plant satellite repeats

  2002cited by this paper
• Plant transposable elements: where genetics meets genomics

  2002cited by this paper
• Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

  2002cited by this paper
• Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses.

  2002cited by this paper
• Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis.

  2002cited by this paper
• Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses.

  2001cited by this paper
• Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome.

  2001cited by this paper
• Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

  2001cited by this paper
• The detection, cloning, and characterisation of WIS 2-1A retrotransposon-like sequences in Triticum aestivum L. and xTriticosecale Wittmack and an examination of their evolution in related Triticeae.

  2001cited by this paper
• Envelope-class retrovirus-like elements are widespread, transcribed and spliced, and insertionally polymorphic in plants.

  2001cited by this paper
• Molecular and cytogenetic analysis of repetitive DNA in pea (pisum sativum L.).

  2001cited by this paper
• Silencing of Retrotransposons in Arabidopsis and Reactivation by the ddm1 Mutation

  2000cited by this paper
• Two new families of tandem repeats isolated from genus Vicia using genomic self-priming PCR

  2000cited by this paper
• EMBOSS: the European Molecular Biology Open Software Suite.

  2000cited by this paper
• A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

  2000cited by this paper
• Plant retrotransposons.

  1999cited by this paper
• Crystal structures of the catalytic domain of HIV-1 integrase free and complexed with its metal cofactor: high level of similarity of the active site with other viral integrases.

  1998cited by this paper
• Evidence that a Recent Increase in Maize Genome Size was Caused by the Massive Amplification of Intergene Retrotransposons

  1998cited by this paper
• Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution.

  1998cited by this paper
• A Metal-induced Conformational Change and Activation of HIV-1 Integrase*

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• What makes Grande1 retrotransposon different

  1997cited by this paper
• Characterization and genomic organization of Ty1-copia group retrotransposons in rye (Secale cereale).

  1997cited by this paper
• tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

  1997cited by this paper
• Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

  1996cited by this paper
• The staden sequence analysis package

  1996cited by this paper
• Preparation of pea (Pisum sativum L.) chromosome and nucleus suspensions from single root tips

  1996cited by this paper
• Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.

  1996cited by this paper
• TheTy1-copia group retrotransposons inVicia species: copy number, sequence heterogeneity and chromosomal localisation

  1996cited by this paper
• Nested Retrotransposons in the Intergenic Regions of the Maize Genome

  1996cited by this paper
• A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

  1995cited by this paper
• Nucleotide sequence of a highly repeated DNA sequence and its chromosomal localization in Allium fistulosum

  1995cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• In situ Hybridization

  1994cited by this paper
• Conserved structures and diversity of functions of RNA-binding proteins.

  1994cited by this paper
• Origin of the main class of repetitive DNA within selected Pennisetum species

  1993cited by this paper
• Retrotransposon families in rice

  1992cited by this paper
• Nuclear DNA content of some important plant species

  1991cited by this paper
• Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase.

  1991cited by this paper
• Origin and evolution of retroelements based upon their reverse transcriptase sequences.

  1990cited by this paper
• Retroviral proteases: first glimpses at the anatomy of a processing machine.

  1989cited by this paper
• Improved tools for biological sequence comparison.

  1988cited by this paper
• Sequence analysis of Vicia faba repeated DNA, the FokI repeat element.

  1984cited by this paper
• A plant DNA minipreparation: Version II

  1983cited by this paper
• DNA variation between and within chromosome complements of vicia species

  1983cited by this paper
• DNA sequencing with chain-terminating inhibitors.

  1977cited by this paper
• Genome size and the proportion of repeated nucleotide sequence DNA in plants

  1974cited by this paper
• Comparison of the DNA of Six Vicia Species by the Method of DNA-DNA Hybridization.

  1971cited by this paper

• Distinct structural variants and repeat landscape shape the genomes of the ancient grapes Aglianico and Falanghina

  2024cites this paper
• Cytogenomic Characterization of Transposable Elements and Satellite DNA in Passiflora L. Species

  2024cites this paper
• Elucidating karyological and agro-morphological characteristics of Vicia cassia boiss. and V. aintabensis Boiss. & Hausskn

  2024cites this paper
• Distinct patterns of satDNA distribution in holocentric chromosomes of spike-sedges (Eleocharis, Cyperaceae).

  2024cites this paper
• De Novo Genome Assembly and Phylogenetic Analysis of Cirsium nipponicum

  2024cites this paper
• Transposable elements: multifunctional players in the plant genome

  2024cites this paper
• Decoding the Genomic Landscape of Pomegranate: A Genome-Wide Analysis of Transposable Elements and Their Structural Proximity to Functional Genes

  2024cites this paper
• Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus

  2023cites this paper
• Discovering the Repeatome of Five Species Belonging to the Asteraceae Family: A Computational Study

  2023cites this paper
• The Singular Evolution of Olea Genome Structure

  2022cites this paper
• Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress

  2022cites this paper
• Chromosome and Genome Diversity in the Genus Trifolium (Fabaceae)

  2021cites this paper
• Unraveling the complexity of faba bean (Vicia faba L.) transcriptome to reveal cold-stress-responsive genes using long-read isoform sequencing technology

  2021cites this paper
• The Genomics of Plant Satellite DNA.

  2021cites this paper
• LTR-retrotransposon dynamics in common fig (Ficus carica L.) genome

  2021cites this paper
• Vicia plants—A comprehensive review on chemical composition and phytopharmacology

  2020cites this paper
• Extensive survey of the ycf4 plastid gene throughout the IRLC legumes: Robust evidence of its locus and lineage specific accelerated rate of evolution, pseudogenization and gene loss in the tribe Fabeae

  2020cites this paper
• Repeat-sequence turnover shifts fundamentally in species with large genomes

  2020cites this paper
• Identification of high-copy number long terminal repeat retrotransposons and their expansion in Phalaenopsis orchids

  2020cites this paper
• A draft genome of grass pea (Lathyrus sativus), a resilient diploid legume

  2020cites this paper
• Interspecific hybridisation and LTR-retrotransposon mobilisation-related structural variation in plants: A case study.

  2020cites this paper
• Characterization of repeat arrays in ultra‐long nanopore reads reveals frequent origin of satellite DNA from retrotransposon‐derived tandem repeats

  2019cites this paper
• Genome-wide characterization of satellite DNA arrays in a complex plant genome using nanopore reads

  2019cites this paper
• Legume genomics and transcriptomics: From classic breeding to modern technologies

  2019cites this paper
• Diversity of repetitive sequences within compact genomes of Phaseolus L. beans and allied genera Cajanus L. and Vigna Savi

  2019cites this paper
• The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

  2019cites this paper
• Copy Number Variation of Transposable Elements in Thinopyrum intermedium and Its Diploid Relative Species

  2019cites this paper
• Plant Transposable Elements: Biology and 2

  2019influential citation
• Red Clover (Trifolium pratense) and Zigzag Clover (T. medium) – A Picture of Genomic Similarities and Differences

  2018cites this paper
• Nuclear DNA C-values are correlated with pollen size at tetraploid but not diploid level and linked to phylogenetic descent in Streptocarpus (Gesneriaceae)

  2018cites this paper
• Identification and characterization of a new satellite-like DNA family in three Agave species

  2018cites this paper
• Exploring the use of wild relatives in potato breeding through integrated cytogenetic and genomic approaches

  2018cites this paper
• Analysis of retrotransposon abundance, diversity and distribution in holocentric Eleocharis (Cyperaceae) genomes

  2018cites this paper
• Comparative analysis of repetitive sequences among species from the potato and the tomato clades

  2018cites this paper
• Structural and Functional Genomic Resources Developed

  2018cites this paper
• Rekonstrukce kompletní chloroplastové DNA u vybraných rostlinných druhů a jejich komparativní analýza

  2018cites this paper
• A Mechanism for Genome Size Reduction Following Genomic Rearrangements

  2018cites this paper
• Transposable Elements in the Pineapple Genome

  2018cites this paper
• Complete fusion of a transposon and herpesvirus created the Teratorn mobile element in medaka fish

  2017cites this paper
• Impact of transposable elements on polyploid plant genomes.

  2017cites this paper
• Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.)

  2017cites this paper
• Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax

  2017cites this paper
• Chromosome Evolution in Connection with Repetitive Sequences and Epigenetics in Plants

  2017cites this paper
• Massive Expansion of Gypsy-Like Retrotransposons in Microbotryum Fungi

  2017influential citation
• Different histories of two highly variable LTR retrotransposons in sunflower species.

  2017cites this paper
• Repetitive DNA: A Versatile Tool for Karyotyping in Festuca pratensis Huds.

  2017cites this paper
• Characterisation of Faba Bean (Vicia faba L.) Transcriptome Using RNA-Seq: Sequencing, De Novo Assembly, Annotation, and Expression Analysis

  2017cites this paper
• Tracking of intercalary DNA sequences integrated into tandem repeat arrays in rye Secale vavilovii

  2017cites this paper
• The Small Nuclear Genomes of Selaginella Are Associated with a Low Rate of Genome Size Evolution

  2016cites this paper
• Genetics and Genomics of Brachypodium

  2016cites this paper
• From Mendel’s discovery on pea to today’s plant genetics and breeding

  2016cites this paper
• Molecular cytogenetic use of BAC clones in Neofinetia falcata and Rhynchostylis coelestis

  2015cites this paper
• Genome Size and the Role of Transposable Elements

  2015cites this paper
• Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

  2015cites this paper
• In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

  2015cites this paper
• Identification of a Novel Retrotransposon with Sex Chromosome-Specific Distribution in Silene latifolia

  2014influential citation
• Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome.

  2014cites this paper
• Exploiting Illumina Sequencing for the Development of 95 Novel Polymorphic EST-SSR Markers in Common Vetch (Vicia sativa subsp. sativa)

  2014cites this paper
• RETROTRANSPOZONU STRUKTŪRA PARASTĀS PRIEDES (PINUS SYLVESTRIS L.) GENOMĀ UN TO EKSPRESIJA

  2014cites this paper
• The repetitive component of the sunflower genome

  2014cites this paper
• The Peculiar Landscape of Repetitive Sequences in the Olive (Olea europaea L.) Genome

  2014cites this paper
• Genome-Wide Analysis of Repeat Diversity across the Family Musaceae

  2014cites this paper
• (PINUS SYLVESTRIS L.) GENOMĀ UN TO EKSPRESIJA Promocijas darba kopsavilkums

  2014cites this paper
• Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa

  2013cites this paper
• Substantial Genome Size Variation in Taraxacum stenocephalum (Asteraceae, Lactuceae)

  2013cites this paper
• Ogre retrotransposons in Lathyrus species

  2013influential citation
• Karyotype Diversity and Evolutionary Trends in Angiosperms

  2013cites this paper
• The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

  2013cites this paper
• Why size really matters when sequencing plant genomes

  2012influential citation
• Diversity of Genome Size and Ty1-copia in Epimedium Species Used for Traditional Chinese Medicines

  2012cites this paper
• Polyploidy in Legumes

  2012cites this paper
• The impact of transposable elements on eukaryotic genomes: from genome size increase to genetic adaptation to stressful environments.

  2012cites this paper
• Karyological studies of some species of the genus Vicia L. (Leguminosae) in Turkey

  2012cites this paper
• Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

  2012cites this paper
• A computational study of the dynamics of LTR retrotransposons in the Populus trichocarpa genome

  2012cites this paper
• Plant Transposable Elements: Biology and Evolution

  2012cites this paper
• Random BAC FISH of monocot plants reveals differential distribution of repetitive DNA elements in small and large chromosome species

  2012cites this paper
• Plant Transposable Elements: Biology and Evolution 2

  2012influential citation
• Pea (Pisum sativum L.) in the Genomic Era

  2012cites this paper
• Genomic Diversity in Two Related Plant Species with and without Sex Chromosomes - Silene latifolia and S. vulgaris

  2012cites this paper
• Submission intended as a Research Article

  2011cites this paper
• LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders

  2011cites this paper
• IRAP: An efficient retrotransposon‐based electrophoretic technique for studying genetic variability among geographical isolates of Schistosoma japonicum

  2011cites this paper
• Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

  2011cites this paper
• Temporal dynamics in the evolution of the sunflower genome as revealed by sequencing and annotation of three large genomic regions

  2011cites this paper
• Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

  2011cites this paper
• Boty-like retrotransposons in the filamentous fungus Botrytis cinerea contain the additional antisense gene brtn.

  2011cites this paper
• Wild Crop Relatives: Genomic and Breeding Resources

  2011cites this paper
• Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes

  2011cites this paper
• A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons

  2011cites this paper
• Single Integration and Spread of a Copia-Like Sequence Nested in rDNA Intergenic Spacers of Allium cernuum (Alliaceae)

  2010cites this paper
• Occurrence and chromosome distribution of retroelements and NUPT sequences in Copaifera langsdorffii Desf. (Caesalpinioideae)

  2010cites this paper
• FIDEL—a retrovirus-like retrotransposon and its distinct evolutionary histories in the A- and B-genome components of cultivated peanut

  2010influential citation
• Assessing the Extent of Substitution Rate Variation of Retrotransposon Long Terminal Repeat Sequences in Oryza sativa and Oryza glaberrima

  2010cites this paper
• Recent Insights into Mechanisms of Genome Size Change in Plants

  2010cites this paper
• Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome

  2010cites this paper
• Phylogénie, éléments transposables et évolution de la taille des génomes chez les lupins

  2009influential citation
• Development of Functional Genomic Platform for Model Legume Medicago Truncatula in Bulgaria

  2009cites this paper
• Genomic analysis of a major seed protein/oil QTL region on soybean linkage group I

  2009cites this paper
• Retrotransposons within Syntenic Regions between Soybean and Medicago truncatula and Their Contribution to Local Genome Evolution

  2009influential citation