The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions

No abstract is available for this paper.

• Publication year

  2017

• Venue

  The ISME Journal

• Publication date

  2017-04-25

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ismej.2017.49PMID 28440800PMCID PMC5520037
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Microbial diversity within the Trichodesmium holobiont.

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• Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP

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• Irreversibly increased nitrogen fixation in Trichodesmium experimentally adapted to elevated carbon dioxide

  2015influential reference
• Regulation of CO2 Concentrating Mechanism in Cyanobacteria

  2015cited by this paper
• One Juliet and four Romeos: VeA and its methyltransferases

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• antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

  2015influential reference
• Black Queen evolution: the role of leakiness in structuring microbial communities.

  2015cited by this paper
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  2015influential reference
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  2014influential reference
• Cryptic carbon and sulfur cycling between surface ocean plankton

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  2014influential reference
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• IMG ER: a system for microbial genome annotation expert review and curation

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• Cross‐basin comparison of phosphorus stress and nitrogen fixation in Trichodesmium

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  1992cited by this paper
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  1991cited by this paper
• Basic local alignment search tool.

  1990cited by this paper
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  1989influential reference
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  1987cited by this paper
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  1978cited by this paper
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  1976cited by this paper
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