Differential sharing and distinct co‐occurrence networks among spatially close bacterial microbiota of bark, mosses and lichens‬‬

No abstract is available for this paper.

• Publication year

  2017

• Venue

  Molecular Ecology

• Publication date

  2017-05-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/mec.14070PMID 28222236
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Basidiomycete yeasts in the cortex of ascomycete macrolichens

  2016cited by this paper
• Tree phyllosphere bacterial communities: exploring the magnitude of intra- and inter-individual variation among host species

  2016cited by this paper
• Contribution of Vegetation to the Microbial Composition of Nearby Outdoor Air

  2016cited by this paper
• Cyanobacterial gardens: the liverwort Frullania asagrayana acts as a reservoir of lichen photobionts.

  2016cited by this paper
• Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.

  2015influential reference
• Plant community richness and microbial interactions structure bacterial communities in soil.

  2015cited by this paper
• A novel assay for the detection of bioactive volatiles evaluated by screening of lichen-associated bacteria

  2015cited by this paper
• Seasonal variation of bacterial endophytes in urban trees

  2015cited by this paper
• Analyzing the antagonistic potential of the lichen microbiome against pathogens by bridging metagenomic with culture studies

  2015cited by this paper
• Mapping tree density at a global scale

  2015influential reference
• Spatial structuring of bacterial communities within individual Ginkgo biloba trees.

  2015cited by this paper
• Microbial cargo: do bacteria on symbiotic propagules reinforce the microbiome of lichens?

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014cited by this paper
• Fast and sensitive protein alignment using DIAMOND

  2014influential reference
• Exploring functional contexts of symbiotic sustain within lichen-associated bacteria by comparative omics

  2014influential reference
• Unraveling the plant microbiome: looking back and future perspectives

  2014cited by this paper
• The Sphagnum microbiome supports bog ecosystem functioning under extreme conditions

  2014cited by this paper
• Molecular studies on cyanobacterial diversity in lichen symbioses

  2013cited by this paper
• New morphological aspects of cephalodium formation in the lichen Lobaria pulmonaria (Lecanorales, Ascomycota)

  2013cited by this paper
• Vertical transmission explains the specific Burkholderia pattern in Sphagnum mosses at multi-geographic scale

  2013cited by this paper
• Practical innovations for high-throughput amplicon sequencing

  2013influential reference
• Diet rapidly and reproducibly alters the human gut microbiome

  2013cited by this paper
• Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome.

  2012cited by this paper
• Microbial Co-occurrence Relationships in the Human Microbiome

  2012cited by this paper
• Microbial life in the phyllosphere

  2012cited by this paper
• Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

  2012cited by this paper
• Sphagnum mosses harbour highly specific bacterial diversity during their whole lifecycle

  2011cited by this paper
• Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

  2011influential reference
• Culturable bacteria in hydroponic cultures of moss Racomitrium japonicum and their potential as biofertilizers for moss production.

  2011cited by this paper
• Microbial metacommunities in the lichen-rock habitat.

  2011cited by this paper
• Bacterial Diversity across Individual Lichens

  2011cited by this paper
• Integrative analysis of environmental sequences using MEGAN4.

  2011influential reference
• Old trees contribute bio-available nitrogen through canopy bryophytes

  2011cited by this paper
• The advantage of growing on moss: facilitative effects on photosynthetic performance and growth in the cyanobacterial lichen Peltigera rufescens

  2011cited by this paper
• Bacterial Communities Associated with the Lichen Symbiosis

  2010cited by this paper
• Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010influential reference
• Species-specific structural and functional diversity of bacterial communities in lichen symbioses

  2009cited by this paper
• Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere.

  2009cited by this paper
• Universal and species-specific bacterial 'fungiphiles' in the mycospheres of different basidiomycetous fungi.

  2009cited by this paper
• Mucilaginibacter kameinonensis sp., nov., isolated from garden soil.

  2008cited by this paper
• In situ analysis of the bacterial community associated with the reindeer lichen Cladonia arbuscula reveals predominance of Alphaproteobacteria.

  2008cited by this paper
• Computing topological parameters of biological networks

  2008influential reference
• Mucilaginibacter paludis gen. nov., sp. nov. and Mucilaginibacter gracilis sp. nov., pectin-, xylan- and laminarin-degrading members of the family Sphingobacteriaceae from acidic Sphagnum peat bog.

  2007cited by this paper
• Clustal W and Clustal X version 2.0

  2007cited by this paper
• SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

  2007cited by this paper
• Symbiont recognition of mutualistic bacteria by Acromyrmex leaf-cutting ants

  2007cited by this paper
• The bryophyte genus Sphagnum is a reservoir for powerful and extraordinary antagonists and potentially facultative human pathogens.

  2007cited by this paper
• The mycorrhiza helper bacteria revisited.

  2007cited by this paper
• vegan : Community Ecology Package. R package version 1.8-5

  2007cited by this paper
• probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007

  2006cited by this paper
• UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

  2005cited by this paper
• The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes

  2005influential reference
• Diversity and Antagonistic Potential of Bacteria Associated with Bryophytes from Nutrient-Poor Habitats of the Baltic Sea Coast

  2004cited by this paper
• Rhizobium-Legume Nodulation : Life Together in the Underground Review

  2003cited by this paper
• Inclusion of facilitation into ecological theory

  2003cited by this paper
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.

  2003influential reference
• A Greedy Algorithm for Aligning DNA Sequences

  2000cited by this paper
• The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

  1999cited by this paper
• Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms.

  1993cited by this paper
• Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

  1990cited by this paper
• Rhizobium-legume nodulation: life together in the underground.

  1989cited by this paper
• Nonparametric estimation of the number of classes in a population

  1984cited by this paper
• phylogenetic and functional analysis of metagenomes

  year unknowninfluential reference

• Rhizobacteria from vineyard and commercial arbuscular mycorrhizal fungi induce synergistic microbiome shifts within grapevine root systems

  2025cites this paper
• A phylogenomic and metagenomic meta-analysis of bacterial diversity in the phyllosphere lifts a veil on Hyphomicrobiales dark matter

  2025cites this paper
• Associations and Ecological Adaptations of Two Hypolithic Gloeoheppia Lichen Species in Arid Desert Environments

  2025influential citation
• Divergent responses of abundant and rare archaeal taxa to spatial heterogeneity in coastal sandy soils

  2025cites this paper
• The Structural and Functional Diversities of Bacteria Inhabiting Plant Woody Tissues and Their Interactions with Fungi

  2025cites this paper
• Metagenomic Insights into the Symbiotic Relationships and Functional Roles of Bark Microbiomes in Tea Trees

  2025cites this paper
• Impact of plant species identity and island characteristics on phyllosphere fungal community structure in an island ecosystem

  2024cites this paper
• Exploring the Metatranscriptome of Bacterial Communities of Two Moss Species Thriving in Different Environments—Terrestrial and Aquatic

  2024cites this paper
• Highly heterogeneous mycobiota shape fungal diversity in two globally distributed lichens

  2024cites this paper
• Nitrogen fertilization practices alter microbial communities driven by clonal integration in Moso bamboo.

  2024cites this paper
• Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals

  2024cites this paper
• Assembly of cereal crop fungal communities under water stress determined by host niche

  2024cites this paper
• Biotic interactions outweigh abiotic factors as drivers of bark microbial communities in Central European forests

  2024influential citation
• Evidence of habitat specificity in sponge microbiomes from Antarctica

  2024cites this paper
• Deciphering Diverse Colonization Patterns of Plastisphere Generalists and Specialists in Greenhouse Soils

  2024cites this paper
• Keystone PGPR ecological effect: An inoculation case study of diazotrophic Novosphingobium sp. N034 on mangrove plant Kandelia obovate

  2024cites this paper
• Host specialization and spatial divergence of bacteria associated with Peltigera lichens promote landscape gamma diversity

  2024cites this paper
• Comparing Sediment Bacterial Communities of Volcanic Lakes and Surrounding Rivers in Inner Mongolia Autonomous Region, Northeastern China

  2024cites this paper
• Controlled-release nitrogen fertilizer application mitigated N losses and modified microbial community while improving wheat yield and N use efficiency

  2023cites this paper
• Lichen-associated microbial members are prevalent in the snow microbiome of a sub-arctic alpine tundra.

  2023cites this paper
• Host selection tendency of key microbiota in arid desert lichen crusts

  2023cites this paper
• Irreversible community difference between bacterioplankton generalists and specialists in response to lake dredging.

  2023cites this paper
• Expanding Antarctic biogeography: microbial ecology of Antarctic island soils

  2023cites this paper
• Differentially abundant bacteria drive the N_2-fixation of a widespread moss in the forest-tundra transition zone

  2023cites this paper
• The third symbiotic partner of the volcano lichen Cladonia vulcani Savicz drove adaptation to an extreme environment

  2023cites this paper
• Regionally Varying Habitat Relationships in Lichens: The Concept and Evidence with an Emphasis on North-Temperate Ecosystems

  2023cites this paper
• Habitat and tree species identity shape aboveground and belowground fungal communities in central European forests

  2023cites this paper
• Chronicle of Research into Lichen-Associated Bacteria

  2022cites this paper
• Tree size drives diversity and community structure of microbial communities on the bark of beech (Fagus sylvatica)

  2022influential citation
• Tardigrade Community Microbiomes in North American Orchards Include Putative Endosymbionts and Plant Pathogens

  2022cites this paper
• Diversity and Source of Airborne Microbial Communities at Differential Polluted Sites of Rome

  2022cites this paper
• Fungal Diversity in the Soil of the Oxytropis glacialis Root System on the Qinghai-Tibet Plateau

  2022cites this paper
• Original Leaf Colonisers Shape Fungal Decomposer Communities of Phragmites australis in Intermittent Habitats

  2022cites this paper
• A call to reconceptualize lichen symbioses.

  2022cites this paper
• Peltigera frigida Lichens and Their Substrates Reduce the Influence of Forest Cover Change on Phosphate Solubilizing Bacteria

  2022cites this paper
• The yeast lichenosphere: high diversity of basidiomycetes from the lichens Tephromela atra and Rhizoplaca melanophthalma.

  2022cites this paper
• Enzymatic stoichiometry reveals phosphorus limitation-induced changes in the soil bacterial communities and element cycling: Evidence from a long-term field experiment

  2022cites this paper
• The bacterial and fungal community composition in time and space in the nest mounds of the ant Formica exsecta (Hymenoptera: Formicidae)

  2021cites this paper
• Elevation-related climate trends dominate fungal co-occurrence network structure and the abundance of keystone taxa on Mt. Norikura, Japan.

  2021cites this paper
• The interaction of acidophiles driving community functional responses to the re-inoculated chalcopyrite bioleaching process.

  2021cites this paper
• Compartment Niche Shapes the Assembly and Network of Cannabis sativa-Associated Microbiome

  2021cites this paper
• Metagenomic analysis of lichen-associated bacterial community profiling in Roccella montagnei

  2021cites this paper
• Bacterial contributions of bio-crusts and litter crusts to nutrient cycling in the Mu Us Sandy Land

  2021cites this paper
• The Lichens’ Microbiota, Still a Mystery?

  2021cites this paper
• The Bacterial Community of the Foliose Macro-lichen Peltigera frigida Is More than a Mere Extension of the Microbiota of the Subjacent Substrate

  2021cites this paper
• Floral fungal-bacterial community structure and co-occurrence patterns in four sympatric island plant species.

  2021cites this paper
• High-Throughput and Continuous Chaotic Bioprinting of Spatially Controlled Bacterial Microcosms.

  2021cites this paper
• From Forest Soil to the Canopy: Increased Habitat Diversity Does Not Increase Species Richness of Cercozoa and Oomycota in Tree Canopies

  2020cites this paper
• Micro-biogeography greatly matters for competition: Continuous chaotic bioprinting of spatially-controlled bacterial microcosms

  2020cites this paper
• Correction: Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the phylum Abditibacteriota (former candidate division FBP)

  2020influential citation
• Contrasting Patterns of the Bacterial Communities in Melting Ponds and Periglacial Rivers of the Zhuxi glacier in the Tibet Plateau

  2020cites this paper
• The Total and Active Bacterial Community of the Chlorolichen Cetraria islandica and Its Response to Long-Term Warming in Sub-Arctic Tundra

  2020cites this paper
• 3D biofilms: in search of the polysaccharides holding together lichen symbioses

  2020cites this paper
• Mainland and island populations of Mussaenda kwangtungensis differ in their phyllosphere fungal community composition and network structure

  2020cites this paper
• Effects of nitrogen and phosphorus addition on microbial community composition and element cycling in a grassland soil

  2020cites this paper
• Microbiome-guided evaluation of Bacillus subtilis BIOUFLA2 application to reduce mycotoxins in maize kernels

  2020cites this paper
• Comparative Analysis of Microbial Community Structure and Function in the Gut of Wild and Captive Amur Tiger

  2020cites this paper
• A taxonomically broad metagenomic survey of 339 species spanning 57 families suggests cystobasidiomycete yeasts are not ubiquitous across all lichens.

  2019cites this paper
• Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere

  2019cites this paper
• Cross-kingdom signalling regulates spore germination in the moss Physcomitrella patens

  2019cites this paper
• The Microbiomes of Seven Lichen Genera Reveal Host Specificity, a Reduced Core Community and Potential as Source of Antimicrobials

  2019cites this paper
• Microbial community structure analysis in Acer palmatum bark and isolation of novel bacteria IAD-21 of the candidate division FBP

  2019cites this paper
• Linking cropland ecosystem services to microbiome taxonomic composition and functional composition in a sandy loam soil with 28-year organic and inorganic fertilizer regimes

  2019cites this paper
• Recent literature on bryophytes — 121(1)

  2018cites this paper
• Nitrogen-Fixing Bacteria Associated with Peltigera Cyanolichens and Cladonia Chlorolichens

  2018cites this paper
• Carbon Consumption Patterns of Microbial Communities Associated with Peltigera Lichens from a Chilean Temperate Forest

  2018cites this paper
• Shifts in community composition and co-occurrence patterns of phyllosphere fungi inhabiting Mussaenda shikokiana along an elevation gradient

  2018cites this paper
• Co-occurrence Network Reveals the Higher Fragmentation of the Bacterial Community in Kaidu River Than Its Tributaries in Northwestern China

  2018cites this paper
• Deciphering functional diversification within the lichen microbiota by meta-omics

  2017cites this paper
• Fungal proliferation and calcium accumulation in the orange slime of Cornus controversa

  2017cites this paper
• Recent literature on lichens—247

  2017cites this paper