Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.)

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Theoretical and Applied Genetics

• Publication date

  2014-01-13

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology

• Identifiers
  DOI 10.1007/s00122-013-2217-3PMID 24170350
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• GENETIC DIVERSITY IN PLANTS

  2014cited by this paper
• BREEDING AND GENETICS Gains in Breeding Upland Cotton for Fiber Quality

  2013cited by this paper
• A microsatellite-based genome-wide analysis of genetic diversity and linkage disequilibrium in Upland cotton (Gossypium hirsutum L.) cultivars from major cotton-growing countries

  2013influential reference
• Tetraploid Wheat Landraces in the Mediterranean Basin: Taxonomy, Evolution and Genetic Diversity

  2012influential reference
• Genetic Diversity and Population Structure in a European Collection of Rice

  2012influential reference
• STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

  2012cited by this paper
• Genetic Diversity in Gossypium genus

  2012cited by this paper
• Development of a core set of SSR markers for the characterization of Gossypium germplasm

  2012cited by this paper
• The interplay between habitat availability and population differentiation

  2012cited by this paper
• Molecular Variation Among and Within Improved Cultivars in the U.S. Cotton Germplasm Collection

  2012cited by this paper
• Agronomic characterization, genetic diversity and association analysis of cotton cultivars using simple sequence repeat molecular markers.

  2011cited by this paper
• Assessing genetic diversity of cotton cultivars using genomic and newly developed expressed sequence tag-derived microsatellite markers.

  2011influential reference
• Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

  2010cited by this paper
• The Genetic Architecture of Maize Flowering Time

  2009cited by this paper
• Genetic Properties of the Maize Nested Association Mapping Population

  2009cited by this paper
• Genetic diversity evaluation of some elite cotton varieties by RAPD analysis

  2009cited by this paper
• Genetic diversity of wild soybean (Glycine soja Sieb. et Zucc.) and Japanese cultivated soybeans [G. max (L.) Merr.] based on microsatellite (SSR) analysis and the selection of a core collection

  2009cited by this paper
• Using molecular markers and field performance data to characterize the Pee Dee cotton germplasm resources

  2009influential reference
• Studying the extent of genetic diversity among Gossypium arboreum L. genotypes/cultivars using DNA fingerprinting

  2008cited by this paper
• Molecular diversity and association mapping of fiber quality traits in exotic G. hirsutum L. germplasm.

  2008cited by this paper
• Genetic diversity and construction of core collection in Chinese wheat genetic resources

  2008cited by this paper
• Genetic Design and Statistical Power of Nested Association Mapping in Maize

  2008cited by this paper
• Registration of RMUP-C5, a Random Mated Population of Upland Cotton Germplasm

  2008cited by this paper
• Genetic diversity and genetic vulnerability—an appraisal

  2008cited by this paper
• Microsatellite diversity in tetraploid Gossypium germplasm: assembling a highly informative genotyping set of cotton SSRs

  2006influential reference
• Genetic Diversity of Asian Cotton (Gossypium arboreum L.) in China Evaluated by Microsatellite Analysis

  2006influential reference
• Sampling a Core Collection of Island Cotton (Gossypium barbadense L.) Based on the Genotypic Values of Fiber Traits

  2006influential reference
• Characterization and genetic diversity analysis of cotton cultivars using microsatellites

  2006influential reference
• Maize association population: a high-resolution platform for quantitative trait locus dissection.

  2005cited by this paper
• PowerMarker: an integrated analysis environment for genetic marker analysis

  2005influential reference
• Genetic Structure and Diversity in Oryza sativa L.

  2005influential reference
• Pedigree‐ vs. DNA Marker‐Based Genetic Similarity Estimates in Cotton

  2005cited by this paper
• Accuracy of estimated phylogenetic trees from molecular data

  2005influential reference
• Genetic diversity among alfalfa (Medicago sativa) cultivars coming from a breeding program, using SSR markers

  2005influential reference
• Molecular marker diversity and field performance in commercial cotton cultivars evaluated in the southwestern USA

  2005influential reference
• Detecting the number of clusters of individuals using the software structure: a simulation study

  2005influential reference
• Genetic structure and diversity in Oryza sativa

  2004influential reference
• Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites.

  2003influential reference
• Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

  2003cited by this paper
• Joint linkage and linkage disequilibrium mapping of quantitative trait loci in natural populations.

  2002cited by this paper
• Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition.

  2002cited by this paper
• Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping.

  2002cited by this paper
• Intersimple sequence repeat (ISSR) polymorphisms as a genetic marker system in cotton

  2001cited by this paper
• A rapid and high yielding DNA miniprep for cotton (Gossypium spp.)

  2001cited by this paper
• Genetic diversity and relationships of diploid and tetraploid cottons revealed using AFLP

  2001influential reference
• Joint linkage and linkage disequilibrium mapping in natural populations.

  2001cited by this paper
• Cotton: Origin, History, Technology, and Production

  2000influential reference
• Inference of population structure using multilocus genotype data.

  2000cited by this paper
• Genetic Similarity Indices for Ancestral Cotton Cultivars and their Impact on Genetic Diversity Estimates of Modern Cultivars

  1999influential reference
• Cotton germplasm diversity and its importance to cultivar development

  1998cited by this paper
• Polymorphism revealed by simple sequence repeats

  1996cited by this paper
• Genetic Base of Upland Cotton Cultivars Released between 1970 and 1990

  1996influential reference
• Genetic fingerprinting of Australian cotton cultivars with RAPD markers.

  1995cited by this paper
• Genetic Diversity of U.S. Upland Cotton Cultivars Released between 1980 and 1990

  1995influential reference
• Genetic diversity in and phylogenetic relationships of the Brazilian endemic cotton,Gossypium mustelinum (Malvaceae)

  1994cited by this paper
• Genetic diversity and origin of the Hawaiian Islands cotton, Gossypium tomentosum

  1992cited by this paper
• NTSYS-pc Numerical Taxonomy and Multivariate Analysis System, version 2.1: Owner manual

  1992cited by this paper
• Genetic Diversity in Gossypium hirsutum and the Origin of Upland Cotton

  1992influential reference
• Allozyme diversity and introgression in the Galapagos Islands. Endemic Gossypium darwinii and its relationship to continental G. barbadense.

  1990cited by this paper
• Genetic perspectives of germplasm conservation

  1984cited by this paper
• Accuracy of estimated phylogenetic trees from molecular data

  1983influential reference
• Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

  1980cited by this paper

• Population structure, genetic diversity analyses and genome-wide association study of photoperiod sensitivity in Pima cotton (Gossypium barbadense L.)

  2026cites this paper
• Assembly and field evaluation of a set of naturally occurring day-neutral cotton landraces under rainfed and irrigated conditions

  2026influential citation
• Survey of genetic diversity in the Ecuadorian national cotton (Gossypium spp. L.) collection assessed by simple sequence repeat (SSR) markers

  2026influential citation
• Integration of inter-simple sequence repeats with machine learning approach for diversity analysis and authentication of Iranian cotton cultivars

  2026cites this paper
• Construction of Gossypium hirsutum—Gossypium turneri chromosome segment introgression population for mapping new QTLs related to yield and fiber quality traits

  2025cites this paper
• Genome-wide association analysis for pollen viability under heat stress in peanut

  2025cites this paper
• A GDSL esterase/lipase gene GbGELP identified from a fiber micronaire QTL qMIC-A11 modulates cell elongation and fiber development

  2025cites this paper
• Genetic and biochemical analyses identify a major locus, GH-PA1, underlying pollen carotenoid accumulation and pigmentation in upland cotton

  2025cites this paper
• Genome-wide association studies unveil candidate genes linked with fruit fiber traits in Calotropis procera

  2025cites this paper
• The National Plant Germplasm System cotton collection—a review of germplasm resources, phenotypic characterization, and genomic variation

  2025cites this paper
• Environmental pressures shape regional patterns of genetic diversity and ancestry in cotton landraces

  2025cites this paper
• Structural Variation and 3D Genome‐Driven DNA/RNA Methylation Divergence Contributing to Cotton Fiber Domestication

  2025cites this paper
• Better root length distribution in the deep soil profile enhances upland cotton performance

  2025cites this paper
• Transcriptome dynamics of Gossypium purpurascens in response to abiotic stresses by Iso-seq and RNA-seq data

  2024cites this paper
• Fashion meets science: how advanced breeding approaches could revolutionize the textile industry

  2024cites this paper
• Genome-wide association study of fiber quality traits in US upland cotton (Gossypium hirsutum L.)

  2024influential citation
• Genetic divergence and hybrid potential for yield and fiber quality in cotton (Gossypium hirsutum. L)

  2024cites this paper
• Characterization of early maturing elite genotypes based on MTSI and MGIDI indexes: an illustration in upland cotton (Gossypium hirsutum L.)

  2024cites this paper
• Genetic diversity in Pima (Gossypium barbadense L.) and advanced interspecific hybrids (Gossypium hirsutum x Gossypium barbadense) of cotton germplasm in Ethiopia

  2024cites this paper
• Screening Some Advanced Upland Cotton (Gossypium Hirsutum L.) Genotypes Tolerance Under Water Deficit

  2024cites this paper
• Transcriptome Revealed GhPP2C43-A Negatively Regulates Salinity Tolerance in an Introgression Line from a Semi-wild Upland Cotton.

  2023cites this paper
• Exploring the genetic diversity and population structure of upland cotton germplasm by iPBS-retrotransposons markers

  2023cites this paper
• Genome-wide association study identifies GhSAL1 affects cold tolerance at the seedling emergence stage in upland cotton (Gossypium hirsutum L.)

  2023cites this paper
• Development of High-Yielding Upland Cotton Genotypes with Reduced Regrowth after Defoliation Using a Combination of Molecular and Conventional Approaches

  2023cites this paper
• Determination of Genetic Diversity of Some Upland and Sea Island Cotton Genotypes Using High-Resolution Capillary Electrophoresis Gel

  2023cites this paper
• Alterations in Growth Habit to Channel End-of-Season Perennial Reserves towards Increased Yield and Reduced Regrowth after Defoliation in Upland Cotton (Gossypium hirsutum L.)

  2023influential citation
• Genome-wide association study reveals novel genes on different chromosomal positions regulating boll weight in upland cotton (Gossypium hirsutum L.)

  2023cites this paper
• Genetic diversity and population structure analysis of upland cotton (Gossypium hirsutum L.) germplasm in China based on SSR markers

  2023cites this paper
• Population Genomics Unravels the Characteristic Relationship between Introgression and Geographical Distribution in Upland Cotton

  2023cites this paper
• Genome-Wide Association Study of Lint Percentage in Gossypium hirsutum L. Races

  2023cites this paper
• A novel parent selection strategy for the development of salt-tolerant cotton cultivars

  2023cites this paper
• Estimation of Genetic Divergence in 40 Elite Cotton Germplasm

  2022cites this paper
• THE INFLUENCE OF GOVERNMENT POLICIES IN THE RELATIONSHIPS SUPPLY CHAIN ON COMPANY PERFORMANCE IN IMPROVING MICRO AND MACRO ECONOMICS .

  2022cites this paper
• Inter-Specific Hybridization in Cotton (Gossypium hirsutum) for Crop Improvement

  2022cites this paper
• ASSESSING GENETIC DIVERSITY AND POPULATION STRUCTURE ANALYSIS IN UPLAND COTTON GERMPLASM THROUGH MICROSATELLITES

  2022cites this paper
• Recent progression and future perspectives in Cotton genomic breeding.

  2022cites this paper
• Identi�cation and genomic characterization of major effect bacterial blight resistance locus (BB-13) in Upland cotton (Gossypium hirsutum L.)

  2022cites this paper
• Identification and genomic characterization of major effect bacterial blight resistance locus (BB-13) in Upland cotton (Gossypium hirsutum L.).

  2022cites this paper
• ESTIMATE OF HETEROSIS AND HETEROBELTIOSIS FOR THE IMPROVEMENT OF YIELD IN UPLAND COTTON (GOSSYPIUM HIRSUTUM L.)

  2022cites this paper
• Identification and Genetic Mapping of Potential QTLs Conferring Heat Tolerance in Cotton (Gossypium hirsutum L.) by Using Micro Satellite Marker’s Approach

  2022cites this paper
• Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Gossypium hirsutum L.)

  2022cites this paper
• Linkage and association analyses reveal that hub genes in energy-flow and lipid biosynthesis pathways form a cluster in upland cotton

  2022cites this paper
• Nucleotide Evolution, Domestication Selection, and Genetic Relationships of Chloroplast Genomes in the Economically Important Crop Genus Gossypium

  2022cites this paper
• Improved Upland Cotton Germplasm for Multiple Fiber Traits Mediated by Transferring and Pyramiding Novel Alleles From Ethyl Methanesulfonate-Generated Mutant Lines Into Elite Genotypes

  2022cites this paper
• Construction of a core germplasm bank of upland cotton (Gossypium hirsutum L.) based on phenotype, genotype and favorable alleles

  2022cites this paper
• Genetic Diversity Analysis of Some Upland Cotton (Gossypium hirsutum L.) Genotypes Using SSR Markers

  2022cites this paper
• Genetic Diversity Analysis of Some Upland Cotton (Gossypium hirsutumL.) Genotypes Using SSR Markers

  2022cites this paper
• Pyramiding novel EMS-generated mutant alleles to improve fiber quality components of elite upland cotton germplasm

  2022cites this paper
• Phenotypic Correlation Analysis in F2 Segregating Populations of Gossypiumhirsutum and Gossypiumarboreum for Boll-Related Traits

  2022cites this paper
• Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton

  2021cites this paper
• Alien genomic introgressions enhanced fiber strength in upland cotton (Gossypium hirsutum L.)

  2021cites this paper
• Path analysis based on genetic association of yield components and insects pest in upland cotton varieties

  2021cites this paper
• POPULATION STRUCTURE AND GENETIC DIVERSITY OF THE PEE DEE COTTON BREEDING PROGRAM.

  2021cites this paper
• Molecular Dissection for Boll Shedding in Upland Cotton Using Microsatellites

  2021cites this paper
• Genetic Factors Underlying Single Fiber Quality in A-Genome Donor Asian Cotton (Gossypium arboreum)

  2021cites this paper
• Genomic and GWAS analyses demonstrate phylogenomic relationships of Gossypium barbadense in China and selection for fibre length, lint percentage and Fusarium wilt resistance

  2021cites this paper
• Analysis of the Genetic Structure and Diversity of Upland Cotton Groups in Different Planting Areas Based on SNP Markers

  2021cites this paper
• Molecular mapping of QTLs for fiber quality traits in Gossypium hirsutum multi-parent recombinant inbred lines

  2021cites this paper
• Genetic Diversity and Association Analysis of Lint Percentage Variation Population in Gossypium Hirsutum L. Based on Microsatellite Markers

  2021cites this paper
• Genetic Diversity and Population Structure of Potato Germplasm in RDA-Genebank: Utilization for Breeding and Conservation

  2021cites this paper
• Registration of PD 20170048, PD 20170049, PD 20170050, PD 20170053, and PD 20170054 germplasm lines of cotton

  2021cites this paper
• Evolution and Diversity of the Cotton Genome

  2021cites this paper
• Registration of two germplasm lines with improved lint yield and fiber elongation in upland cotton

  2021cites this paper
• Genomic insight into the divergence and adaptive potential of a forgotten landrace G. hirsutum L. purpurascens.

  2021cites this paper
• Microsatellite marker based diversity analysis and DNA fingerprinting of Asiatic cotton (Gossypium arboreum) varieties of India

  2021cites this paper
• Identification of Novel Marker–Trait Associations for Lint Yield Contributing Traits in Upland Cotton (Gossypium hirsutum L.) Using SSRs

  2021cites this paper
• Evaluation and genome-wide association study of resistance to bacterial blight race 18 in U.S. Upland cotton germplasm

  2021cites this paper
• Study of Heterosis, Combining Ability and Parental Diversity for Seed Cotton Yield and Contributing Traits using Diallel Data in Cotton (G. hirsutum L.)

  2021cites this paper
• Cotton pan-genome retrieves the lost sequences and genes during domestication and selection

  2021cites this paper
• Cotton germplasm improvement and progress in Pakistan

  2021cites this paper
• Microsatellite marker based diversity analysis and DNA fingerprinting of Asiatic cotton (Gossypium arboreum) varieties of India

  2021cites this paper
• Assessment of genetic variability of passion fruit using simple sequence repeat (SSR) markers

  2020cites this paper
• The Tale of Cotton Plant: From Wild Type to Domestication, Leading to Its Improvement by Genetic Transformation

  2020cites this paper
• A global survey of the gene network and key genes for oil accumulation in cultivated tetraploid cottons

  2020cites this paper
• POPULATION STRUCTURE AND LINKAGE DISEQUILIBRIUM ANALYSES OF MODEL PLANT Brachypodium distachion THROUGH iPBS MARKERS

  2020cites this paper
• Genetic diversity of sunflower genotypes under drought stress by principle component analysis

  2020cites this paper
• LEVELS OF REGIONAL PHENOTYPIC ADAPTATION (QST) INDICATE THAT NEUTRALITY HAS SHAPED THE POPULATION STRUCTURE OF THE SOYBEAN-INFECTING PATHOGEN Rhizoctonia solani AG-1 IA

  2020cites this paper
• GENETIC DIVERSITY AND IDENTIFICATION OF TRAIT-SPECIFIC ACCESSIONS FOR DROUGHT STRESS FROM SUNFLOWER GERMPLASM

  2020cites this paper
• Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton CURRENT STATUS:

  2020cites this paper
• Genomic insight into the biogeographic history, divergence, and adaptive potential of G. purpurascens, a forgotten landrace of G. hirsutum

  2020cites this paper
• Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton

  2020cites this paper
• Introgression Leads to Genomic Divergence and Responsible for Important Traits in Upland Cotton

  2020cites this paper
• Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton

  2020cites this paper
• Genomic Insight into Differentiation and Selection Sweeps in the Improvement of Upland Cotton

  2020cites this paper
• Genetic structure, gene flow pattern, and association analysis of superior germplasm resources in domesticated upland cotton (Gossypium hirsutum L.)

  2020cites this paper
• Genetic diversity study of improved cotton (G. hirsutum L.) varieties in Ethiopia using simple sequence repeats markers

  2019influential citation
• Identifying favorable alleles for improving key agronomic traits in upland cotton

  2019cites this paper
• QTL mapping and genetic effect of chromosome segment substitution lines with excellent fiber quality from Gossypium hirsutum × Gossypium barbadense

  2019cites this paper
• Genetic Diversity and Population Structure in Elite U.S. and Race Stock Accessions of Upland Cotton (Gossypium hirsutum)

  2019cites this paper
• Genetic analysis of the transition from wild to domesticated cotton (G. hirsutum L.)

  2019cites this paper
• Genetic Diversity and Population Structure Analysis in Upland Cotton Germplasm

  2019influential citation
• Extensive intraspecific gene order and gene structural variations in upland cotton cultivars

  2019cites this paper
• Genotypic variations in salinity tolerance among Bt cotton

  2019cites this paper
• Assessing the Breeding Potential of Thirteen Day‐Neutral Landrace Accessions in an Upland Cotton Breeding Program

  2019cites this paper
• Resistance to Meloidogyne incognita Induced by Bacillus spp.

  2019cites this paper
• Identification of candidate genes for key fibre‐related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions

  2019cites this paper
• A genome-wide association study uncovers consistent quantitative trait loci for resistance to Verticillium wilt and Fusarium wilt race 4 in the US Upland cotton

  2019cites this paper
• Genetic Basis of Fiber Improvement and Decreased Stress Tolerance in Cultivated Versus Semi-Domesticated Upland Cotton

  2019cites this paper
• Genotyping-by-Sequencing of Gossypium hirsutum Races and Cultivars Uncovers Novel Patterns of Genetic Relationships and Domestication Footprints

  2019cites this paper
• Genotyping and molecular analysis of transgenic sequences in chrysanthemum (Chrysanthemum X morifolium Ramat)

  2019cites this paper