Indices, Graphs and Null Models: Analyzing Bipartite Ecological Networks

No abstract is available for this paper.

• Publication year

  2009

• Venue

  The Open Ecology Journal

• Publication date

  2009-02-13

• Fields of study

  Computer Science, Environmental Science

• Identifiers
  DOI 10.2174/1874213000902010007
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Stability and Complexity in Model Ecosystems

  2019cited by this paper
• Ecological networks--beyond food webs.

  2009cited by this paper
• Hierarchical structure and the prediction of missing links in networks

  2008cited by this paper
• Estimating nonlinear interaction strengths: an observation-based method for species-rich food webs.

  2008cited by this paper
• Effects of heterogeneous interaction strengths on food web complexity

  2008cited by this paper
• Introducing the bipartite Package: Analysing Ecological Networks

  2008cited by this paper
• Success and its limits among structural models of complex food webs.

  2008cited by this paper
• Connectance and parasite diet breadth in flea-mammal webs

  2008influential reference
• Understanding the Web of Life: The Birds, the Bees, and Sex with Aliens

  2008cited by this paper
• What do interaction network metrics tell us about specialization and biological traits?

  2008influential reference
• Long-term observation of a pollination network: fluctuation in species and interactions, relative invariance of network structure and implications for estimates of specialization.

  2008cited by this paper
• A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement

  2008cited by this paper
• A General Model for Food Web Structure

  2008cited by this paper
• On nestedness analyses: rethinking matrix temperature and anti‐nestedness

  2007cited by this paper
• Interaction intimacy affects structure and coevolutionary dynamics in mutualistic networks.

  2007cited by this paper
• Null model analysis of species nestedness patterns.

  2007cited by this paper
• Non-random coextinctions in phylogenetically structured mutualistic networks

  2007cited by this paper
• Habitat modification alters the structure of tropical host–parasitoid food webs

  2007cited by this paper
• Toward ecologically explicit null models of nestedness

  2007cited by this paper
• The modularity of pollination networks

  2007cited by this paper
• The nested structure of marine cleaning symbiosis: is it like flowers and bees?

  2007cited by this paper
• Linkage Rules for Plant–Pollinator Networks: Trait Complementarity or Exploitation Barriers?

  2007cited by this paper
• Specialization, constraints, and conflicting interests in mutualistic networks.

  2007cited by this paper
• Response of complex food webs to realistic extinction sequences.

  2007cited by this paper
• Species abundance and asymmetric interaction strength in ecological networks

  2007influential reference
• Asymmetric specialization and extinction risk in plant–flower visitor webs: a matter of morphology or abundance?

  2007cited by this paper
• Disentangling community patterns of nestedness and species co‐occurrence

  2007cited by this paper
• vegan : Community Ecology Package. R package version 1.8-5

  2007cited by this paper
• Null model tests of clustering of species, negative co-occurrence patterns and nestedness in meta-communities.

  2007cited by this paper
• Ecological networks, nestedness and sampling effort

  2007cited by this paper
• Network properties of an epiphyte metacommunity

  2007cited by this paper
• Plant-Pollinator Interactions: From Specialization to Generalization

  2007cited by this paper
• The smallest of all worlds: pollination networks.

  2006cited by this paper
• Ecological networks and their fragility

  2006cited by this paper
• Habitat loss and the structure of plant-animal mutualistic networks.

  2006cited by this paper
• Comment on "Asymmetric Coevolutionary Networks Facilitate Biodiversity Maintenance"

  2006cited by this paper
• Statistical analysis of gene regulatory networks reconstructed from gene expression data of lung cancer

  2006cited by this paper
• Improving the analyses of nestedness for large sets of matrices

  2006cited by this paper
• Asymmetric Coevolutionary Networks Facilitate Biodiversity Maintenance

  2006influential reference
• A new algorithm to calculate the nestedness temperature of presence–absence matrices

  2006cited by this paper
• The ecological consequences of complex topology and nested structure in pollination webs.

  2006cited by this paper
• Size constraints and flower abundance determine the number of interactions in a plant /flower visitor web

  2006cited by this paper
• Structure in plant–animal interaction assemblages

  2006cited by this paper
• Asymmetries in specialization in ant–plant mutualistic networks

  2006cited by this paper
• Measuring specialization in species interaction networks

  2006cited by this paper
• Interaction frequency as a surrogate for the total effect of animal mutualists on plants

  2005cited by this paper
• Experimental evidence for apparent competition in a tropical forest food web

  2004cited by this paper
• Interaction strengths in food webs: issues and opportunities

  2004cited by this paper
• Pajek - Analysis and Visualization of Large Networks

  2004cited by this paper
• Tolerance of pollination networks to species extinctions

  2004cited by this paper
• Geographic patterns in plant-pollinator mutualistic networks: Comment

  2004cited by this paper
• Sampling effects and the robustness of quantitative and qualitative food-web descriptors.

  2004cited by this paper
• ASYMMETRIC SPECIALIZATION: A PERVASIVE FEATURE OF PLANT-POLLINATOR INTERACTIONS

  2004cited by this paper
• Effects of missing data in social networks

  2003cited by this paper
• The nested assembly of plant–animal mutualistic networks

  2003cited by this paper
• Changes in interaction biodiversity induced by an introduced ungulate

  2003cited by this paper
• NULL MODEL ANALYSES OF SPECIALIZATION IN PLANT–POLLINATOR INTERACTIONS

  2003cited by this paper
• Network motifs: simple building blocks of complex networks.

  2002cited by this paper
• Food-web structure and network theory: The role of connectance and size

  2002cited by this paper
• Co‐occurrence of ectoparasites of marine fishes: a null model analysis

  2002cited by this paper
• GEOGRAPHIC PATTERNS IN PLANT–POLLINATOR MUTUALISTIC NETWORKS

  2002cited by this paper
• Analysis of Ecological Communities

  2002cited by this paper
• Ecological Specialization and Susceptibility to Disturbance: Conjectures and Refutations

  2002cited by this paper
• Compartmentalization in plant–insect flower visitor webs

  2002cited by this paper
• Invariant properties in coevolutionary networks of plant-animal interactions

  2002cited by this paper
• QUANTITATIVE DESCRIPTORS OF FOOD-WEB MATRICES

  2002influential reference
• Spatial scaling laws may not apply to most animal species

  2001cited by this paper
• Null model analysis of species co-occurrence patterns

  2000cited by this paper
• The Evolution of Predator-Prey Interactions: Theory and Evidence

  2000cited by this paper
• Multivariate Statistics for Wildlife and Ecology Research

  2000cited by this paper
• Pattern and Process in Macroecology

  2000cited by this paper
• Ecological Assembly Rules: Perspectives, Advances, Retreats

  2000cited by this paper
• The diversity–stability debate

  2000cited by this paper
• The structure of an aphid–parasitoid community

  1999cited by this paper
• Strong effects of weak interactions in ecological communities

  1999cited by this paper
• Ecological assembly rules : perspectives, advances, retreats

  1999cited by this paper
• Nested species subsets, gaps, and discrepancy

  1999cited by this paper
• Collective dynamics of ‘small-world’ networks

  1998cited by this paper
• NULL MODELS IN ECOLOGY

  1996cited by this paper
• Generalization in Pollination Systems, and Why it Matters

  1996cited by this paper
• The measure of order and disorder in the distribution of species in fragmented habitat

  1993cited by this paper
• Competitive exclusion, or species aggregation?

  1992cited by this paper
• Insect-flower Relationship in the Primary Beech Forest of Ashu, Kyoto : An Overview of the Flowering Phenology and the Seasonal Pattern of Insect Visits

  1990cited by this paper
• Island-sharing by archipelago species

  1990cited by this paper
• Data analysis in community and landscape ecology

  1987cited by this paper
• Patterns of Mutualistic Interactions in Pollination and Seed Dispersal: Connectance, Dependence Asymmetries, and Coevolution

  1987cited by this paper
• Nested subsets and the structure of insular mammalian faunas and archipelagos

  1986cited by this paper
• A Variance Test for Detecting Species Associations, with Some Example Applications

  1984cited by this paper
• Ecological Communities: Conceptual Issues and the Evidence

  1984cited by this paper
• Food webs.

  1983cited by this paper
• Pollination ecology of the spring wildflower community in the deciduous forests of Piedmont, North Carolina

  1982cited by this paper
• An Efficient Method of Generating Random R × C Tables with Given Row and Column Totals

  1981cited by this paper
• Problems in the measurement of evenness in ecology

  1981cited by this paper
• Nature's Allograft

  1973cited by this paper
• Ecology: The Experimental Analysis of Distribution and Abundance

  1973cited by this paper

• Tick–host associations across contrasting habitats in tropical Peninsular Malaysia

  2026cites this paper
• Herpetofaunal diversity of the disturbed and isolated Bukit Maras in Terengganu, Peninsular Malaysia

  2026influential citation
• A comprehensive, multi-method dataset of plant-frugivore interactions in a Mediterranean hotspot.

  2026cites this paper
• Trait-Mediated Variation in Plant Interactive Roles Within Plant–Floral Visitor Networks

  2026cites this paper
• Plant‐Pollinator Interactions in Grasslands Established on Arable Land

  2026cites this paper
• A amostragem estratificada aprimora a compreensão das redes entre morcegos e frutos na Mata Atlântica meridional

  2026cites this paper
• Silent takeover: How invasive bees reshaped plant-pollinator interactions in a biodiversity hotspot

  2026cites this paper
• The Seasonal Dietary Shift and Niche Resilience of Yaks on the Qinghai-Tibetan Plateau.

  2026cites this paper
• Drivers of Viral Prevalence in Landscape‐Scale Pollinator Networks Across Europe: Honey Bee Viral Density, Niche Overlap With This Reservoir Host and Network Architecture

  2026cites this paper
• First Measurements of Mixed Floral Traits Influencing Anacardium occidentale (Anacardeacae) Attractiveness to Bees in Côte d'Ivoire: Conservation and Agricultural Implications

  2026cites this paper
• Exploring the relationship between dung beetles and mammalian species in Indian subcontinent

  2026cites this paper
• Environmental Stress‐Driven Trophic Associations Modulate Fish Biogeography in a Multi‐Tributary River Basin

  2026cites this paper
• Bee – Plant networks in agricultural landscapes are enhanced by increased landscape diversity and agri-environmental measures

  2026cites this paper
• MultiTroph: Multi-trophic interactions in a forest biodiversity experiment in China

  2026cites this paper
• Seed dispersal networks become more structured and stable with forest regeneration

  2026cites this paper
• Floristic inventory of the main markets of the Yucatan Peninsula, Mexico.

  2026cites this paper
• Seasonal variation in trophic interactions and niche partitioning among spider guilds associated with rupicolous bromeliads in the Brazilian Caatinga

  2026cites this paper
• Increased traffic volume threatens plant–pollinator interactions and plant reproductive success

  2026cites this paper
• Does the mid-domain effect shape interaction networks along environmental gradients?

  2026cites this paper
• The hidden multitrophic diversity of specialized grass-shoot insects – neglected by grassland management

  2026cites this paper
• Replacing the natural savanna matrix with eucalyptus plantations and soybean fields changes the seed rain promoted by bats in Amazonian savannas

  2026cites this paper
• Restoration of ecological interactions: The influence of site and landscape factors

  2026cites this paper
• The role of plant polyploidy in the structure of plant-pollinator communities.

  2026cites this paper
• Endemic Castilleja grisea support diverse floral-visitor assemblages with implications for promoting local plant communities

  2026cites this paper
• The increasing stability of large food webs: generation time as a possible explanation

  2026cites this paper
• Navigating a changing world: on the significance of rewiring for mutualistic interactions, caveats and future directions

  2025cites this paper
• A taste for dung: food preferences of dung beetles uncovered

  2025cites this paper
• Long-term glyphosate application and its effects on soil total nitrogen and microbial composition two years after application stopped in biochar-amended soil

  2025cites this paper
• Impacts of sampling effort on seasonal plant-pollinator interaction turnover over eight years

  2025influential citation
• Evaluación de la biodiversidad y abundancia de ectoparásitos dípteros en murciélagos de cuatro provincias de Ecuador

  2025cites this paper
• Microorganisms in wild European reptiles: bridging gaps in neglected conditions to inform disease ecology research

  2025cites this paper
• Rainforest Fragmentation Decreases the Robustness of Plant‐Frugivore Interaction Networks

  2025influential citation
• Trophic ecology and foraging behaviour of Neotropical tanagers: fruit–frugivore relationships and arthropod foraging

  2025cites this paper
• Landscape context mediates the effect of pollinator garden enhancements on pollinator visitation and plant-pollinator interactions

  2025cites this paper
• Evolution and challenges of ChatGPT in higher education: an analysis of the conceptualization and applications in the first six months of public access

  2025cites this paper
• Back to the roots: Uncovering ectomycorrhizal communities across three major African vegetation types

  2025influential citation
• Polychromophilus spp. (Haemosporida: Plasmodiidae): First Molecular Detection in Bat Flies From Brazilian Bats

  2025cites this paper
• Regional restructuring in planktic foraminifera communities through Pliocene-early Pleistocene climate variability

  2025cites this paper
• Tri-trophic networks of oak gall-inducing-insects and their parasitoids in Mexican avocado agrosystems: Forest coverage and local climatic variables importance

  2025cites this paper
• Diversity of ectomycorrhizal fungal communities across six Picea species grown in common gardens

  2025cites this paper
• Microbial Control on Dissolved Organic Matter Composition along the South-to-North Water Diversion Middle Route Project

  2025cites this paper
• Interaction network of Phoradendron and its hosts and the influence of phylogenetic, geographic, and environmental factors on the probability of interaction.

  2025cites this paper
• Analyzing pollen content to assess honey bee (Apis mellifera Linnaeus, 1758) foraging in an urban area

  2025cites this paper
• Endozoochorous seed dispersal in urban ecosystems: a global review of patterns, interactions, and knowledge gaps

  2025cites this paper
• Interactions between dissolved organic matter composition and microbial communities in runoff from biocrust-colonized slopes on the Loess Plateau of China

  2025cites this paper
• Moth‐pollination through the looking glass: Structure of a flower‐settling moth network reveals functional groups

  2025cites this paper
• Birds as seed dispersers of plants: their impacts on plant ecological and evolutionary dynamics

  2025cites this paper
• Rare plant’s need for native pollinators threatened by invasive plant-pollinator relationship

  2025cites this paper
• Effects of a small reservoir on the trophic network structure of fishes: a comparison between downstream and upstream stretches

  2025influential citation
• Short-tongued fly pollination of the vomit-scented Crassula peploides (Crassulaceae) in the southern African Drakensberg Mountains

  2025cites this paper
• The Structure of Sunbird Floral Visitation and Pollen Transport Networks From an Afrotropical Agricultural Landscape

  2025cites this paper
• Inductive link prediction facilitates the discovery of missing links and enables cross-community inference in ecological networks

  2025cites this paper
• Linking the type and origin of the solid wastes in ricefields: Implications in waste management

  2025cites this paper
• Revealing vertical layers: tree species distribution and ecological complexity in Brazilian cloud forests

  2025cites this paper
• Diet of the ocelot, Leopardus pardalis (Carnivora: Felidae), in the Neotropical region: a review analysis and new data from central Brazil

  2025cites this paper
• Environmental DNA metabarcoding reveals complex interactions between natural capital in orchards: Insights into arthropod community dynamics and foraging diversity

  2025cites this paper
• The Effects of Frost and Fire on the Traits, Resources, and Floral Visitors of a Cerrado Plant, and Their Impact on the Plant–Visitor Interaction Network and Fruit Formation

  2025cites this paper
• Antagonistic Rewiring and Turnover Patterns in a Neotropical Fish–Parasite Metanetwork

  2025cites this paper
• Bottom‐up and top‐down effects combine to drive predator–prey interactions in a forest biodiversity experiment

  2025cites this paper
• Temperature and Biodiversity Regulate the Robustness of Plant–Microbe Networks in Natural Forests at Large Scale

  2025influential citation
• Mutualism and Dispersal Heterogeneity Shape Stability, Biodiversity, and Structure of Theoretical Plant–Pollinator Meta-Networks

  2025influential citation
• Uso diferencial de recursos entre dos especies de Thraupis en un ecosistema urbano

  2025cites this paper
• American shorebird-prey network patterns: Geographic variation in non-breeding habitats

  2025cites this paper
• Differences in Plant–Pollinator Network Structure and Pollinator Importance Between a Continental and an Oceanic Island Community

  2025cites this paper
• On the invasion of fish parasites in freshwater environments: an overview

  2025cites this paper
• Flowering Plant Microbiomes and Network Interactions Across an Urban Gradient

  2025cites this paper
• Evolutionary history as the main driver of cohesive groups' hierarchical organization in flea-mammal interaction networks.

  2025cites this paper
• Management implications of human livelihood strategies on Madagascar's coastal landscapes

  2025cites this paper
• Tracking Biosecurity Through the Diversity and Network Structure of International Trade

  2025cites this paper
• Urbanization strengthens vertical stratification of ant nutrient preferences in a temperate forest ecosystem

  2025influential citation
• Architecture and stability of tripartite ecological networks with two interaction types.

  2025cites this paper
• Network Assemblages of Elevational Niche‐Associated Diversity in Fijian Native Bees

  2025cites this paper
• Stream Co‐Occurrence Networks Depend on Spatial Extent, Environmental Conditions and Organismal Group

  2025cites this paper
• Exploring the bird-tree relationship in urban streetscape: Implication for conservation

  2025cites this paper
• Invasive and Native Non‐Crop Plants Support Aphidophagous Insects in Chilli Pepper Agroecosystems

  2025cites this paper
• Land-Use Legacies Affect Flower Visitation Network Structure After Forest Restoration

  2025cites this paper
• More fruits, more birds? How plant traits attract birds feeding in urban green spaces during winter

  2025cites this paper
• Diversity and Relevance of Non‐Sphingid Moths as Pollinators in the Neotropics

  2025cites this paper
• Planting native wildflowers improves vacant land as bee habitat in a post‐industrial city

  2025cites this paper
• Systemic intermediation for transformative research and innovation policy: intermediation activities and networks enabled through a portfolio approach

  2025cites this paper
• Anthropogenic intensification on plant-pollinator interactions over four decades in Chile: a spatiotemporal assessment

  2025cites this paper
• Long‐term management is required for the recovery of pollination networks and function in restored grasslands

  2025cites this paper
• Comparing bird-plant interaction networks between xerophytic and humid forests of the southeastern Neotropics

  2025cites this paper
• Pollen Transport Networks Help Reveal the Importance of Dipteran Pollinators in Coastal Plant Communities

  2025cites this paper
• Worms of change: anthropogenic disturbance changed the ectoparasite community structure of Lake Victoria cichlids

  2025cites this paper
• Dietary niche partitioning of two sympatric mesocarnivores in a cool temperate forest ecosystem: The influence of seasonal variation and apex carnivores

  2025cites this paper
• Sensitivity, criticality, and optimization in bipartite networks: application in urban transit infrastructure

  2025influential citation
• Invasive common milkweed strongly simplifies insect flower-visiting networks

  2025cites this paper
• MicroRNA mechanisms instructing Purkinje cell specification.

  2025cites this paper
• Migratory patterns and seasonal habitat use of great hammerhead sharks (Sphyrna mokarran) in the southeastern United States.

  2025cites this paper
• Land-use effects on aphid-parasitoid-hyperparasitoid food web structure and function

  2025cites this paper
• Anthropogenic disturbances simplify frugivory interactions in Amazonia

  2025cites this paper
• Are honey bees altering wild plant–bee interactions in reconstructed native habitats? An investigation of summer season effects in row‐crop agroecosystems with prairie strips

  2025cites this paper
• Multidimensionality of tree communities structure host-parasitoid networks and their phylogenetic composition

  2025cites this paper
• Host-natural enemy communities in a changing world: The impact of forest loss on cavity-nesting Hymenoptera and their natural enemies.

  2025cites this paper
• The environmental dependence of ecological interaction networks

  2025cites this paper
• Understanding biological control function and trophic interaction dynamics of an artificially released predatory bug by DNA metabarcoding.

  2025cites this paper
• Convergence of plant-leafminer associations on two continents

  2025cites this paper
• Complementarity in alliances: How strategic compatibility and hierarchy promote efficient cooperation in international security

  2025cites this paper
• Invasive plant and honeybee alter native plant-pollinator network structure in dry forest.

  2025cites this paper