Purification and characterization of Escherichia coli and human nucleotide excision repair enzyme systems.

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Methods in Enzymology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/S0076-6879(06)08012-8PMID 16793370
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Purification and characterization of DNA photolyases.

  2006cited by this paper
• Xeroderma Pigmentosum Complementation Group E Protein (XPE/DDB2): Purification of Various Complexes of XPE and Analyses of Their Damaged DNA Binding and Putative DNA Repair Properties

  2005cited by this paper
• Nucleotide excision repair.

  2005cited by this paper
• Nucleotide excision repair in E. coli and man.

  2004cited by this paper
• Characterization of transcription-repair coupling factors in E. coli and humans.

  2003cited by this paper
• Reduced sulfhydryls maintain specific incision of BPDE-DNA adducts by recombinant thermoresistant Bacillus caldotenax UvrABC endonuclease.

  2003cited by this paper
• Impaired Regulation of Tumor Suppressor p53 Caused by Mutations in the Xeroderma Pigmentosum DDB2 Gene: Mutual Regulatory Interactions between p48DDB2 and p53

  2003cited by this paper
• Recognition and repair of the cyclobutane thymine dimer, a major cause of skin cancers, by the human excision nuclease.

  2003cited by this paper
• Effect of Damage Type on Stimulation of Human Excision Nuclease by SWI/SNF Chromatin Remodeling Factor

  2003cited by this paper
• Expression of FLAG fusion proteins in insect cells: application to the multi-subunit transcription/DNA repair factor TFIIH.

  2002cited by this paper
• The SWI/SNF Chromatin-Remodeling Factor Stimulates Repair by Human Excision Nuclease in the Mononucleosome Core Particle

  2002cited by this paper
• Molecular Cloning: A Laboratory Manual

  2001cited by this paper
• Reconstitution of recombinant TFIIH that can mediate activator‐dependent transcription

  2001cited by this paper
• Human Damage-specific DNA-binding Protein p48

  2000cited by this paper
• Reconstitution of the transcription factor TFIIH: assignment of functions for the three enzymatic subunits, XPB, XPD, and cdk7.

  1999cited by this paper
• Cullin 4A Associates with the UV-damaged DNA-binding Protein DDB*

  1999cited by this paper
• Efficient nucleotide excision repair of cisplatin, oxaliplatin, and Bis-aceto-ammine-dichloro-cyclohexylamine-platinum(IV) (JM216) platinum intrastrand DNA diadducts.

  1999cited by this paper
• Nucleotide Excision Repair in the Third Kingdom

  1998cited by this paper
• In vitro repair of oxidative DNA damage by human nucleotide excision repair system: possible explanation for neurodegeneration in xeroderma pigmentosum patients.

  1997cited by this paper
• Initiation of DNA interstrand cross-link repair in humans: the nucleotide excision repair system makes dual incisions 5' to the cross-linked base and removes a 22- to 28-nucleotide-long damage-free strand

  1997cited by this paper
• Rodent UV-sensitive mutant cell lines in complementation groups 6-10 have normal general excision repair activity.

  1997cited by this paper
• RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair.

  1997cited by this paper
• Reconstitution of Human Excision Nuclease with Recombinant XPF-ERCC1 Complex*

  1997cited by this paper
• DNA excision repair assays.

  1997cited by this paper
• Overproduction, Purification, and Characterization of the XPC Subunit of the Human DNA Repair Excision Nuclease*

  1996cited by this paper
• Reaction Mechanism of Human DNA Repair Excision Nuclease (*)

  1996cited by this paper
• Replication Protein A Confers Structure-specific Endonuclease Activities to the XPF-ERCC1 and XPG Subunits of Human DNA Repair Excision Nuclease (*)

  1996cited by this paper
• ERCC4 (XPF) encodes a human nucleotide excision repair protein with eukaryotic recombination homologs

  1996cited by this paper
• Mutations Specific to the Xeroderma Pigmentosum Group E Ddb− Phenotype*

  1996cited by this paper
• Excision Repair in Mammalian Cells (*)

  1995cited by this paper
• Human DNA Repair Excision Nuclease

  1995cited by this paper
• Reconstitution of Human DNA Repair Excision Nuclease in a Highly Defined System (*)

  1995cited by this paper
• The General Transcription-Repair Factor TFIIH Is Recruited to the Excision Repair Complex by the XPA Protein Independent of the TFIIE Transcription Factor (*)

  1995cited by this paper
• Purification and cloning of a nucleotide excision repair complex involving the xeroderma pigmentosum group C protein and a human homologue of yeast RAD23.

  1994cited by this paper
• Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II

  1994cited by this paper
• Recombinant replication protein A: expression, complex formation, and functional characterization.

  1994cited by this paper
• Substrate spectrum of human excinuclease: repair of abasic sites, methylated bases, mismatches, and bulky adducts.

  1994cited by this paper
• DNA repair by eukaryotic nucleotide excision nuclease. Removal of thymine dimer and psoralen monoadduct by HeLa cell-free extract and of thymine dimer by Xenopus laevis oocytes.

  1993cited by this paper
• Reconstitution of mammalian excision repair activity with mutant cell-free extracts and XPAC and ERCC1 proteins expressed in Escherichia coli.

  1993cited by this paper
• Characterization of a human DNA damage binding protein implicated in xeroderma pigmentosum E.

  1993cited by this paper
• Complementation of the DNA repair defect in xeroderma pigmentosum group G cells by a human cDNA related to yeast RAD2

  1993cited by this paper
• Human nucleotide excision nuclease removes thymine dimers from DNA by incising the 22nd phosphodiester bond 5' and the 6th phosphodiester bond 3' to the photodimer.

  1992cited by this paper
• (A)BC excinuclease: the Escherichia coli nucleotide excision repair enzyme

  1992cited by this paper
• The C-terminal half of UvrC protein is sufficient to reconstitute (A)BC excinuclease.

  1991cited by this paper
• An in vitro transcription analysis of early responses of the human immunodeficiency virus type 1 long terminal repeat to different transcriptional activators

  1991cited by this paper
• The repair patch of E. coli (A)BC excinuclease.

  1990cited by this paper
• In vitro proteolytic cleavage of the Escherichia coli Ada protein by the ompT gene product

  1989cited by this paper
• Human nucleotide excision repair in vitro: repair of pyrimidine dimers, psoralen and cisplatin adducts by HeLa cell-free extract.

  1989cited by this paper
• DNA and RNA sequence determination based on phosphorothioate chemistry.

  1988cited by this paper
• Complementation of the xeroderma pigmentosum DNA repair defect in cell-free extracts.

  1988cited by this paper
• Construction of DNA substrates modified with psoralen at a unique site and study of the action mechanism of ABC excinuclease on these uniformly modified substrates.

  1986cited by this paper
• Amplification and purification of UvrA, UvrB, and UvrC proteins of Escherichia coli.

  1985cited by this paper
• Effect of DNA polymerase I and DNA helicase II on the turnover rate of UvrABC excision nuclease.

  1985cited by this paper
• A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region.

  1983cited by this paper
• Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.

  1983cited by this paper
• DNA repair : a laboratory manual of research procedures

  1981cited by this paper
• DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract.

  1980cited by this paper

• Heated tobacco product emissions induce DNA damage in human bronchial epithelial cells via radical formation

  2025cites this paper
• Use of qPCR to Evaluate Efficiency of the Bulky DNA Damage Removal in Extracts of Mammalian Cells with Different Maximum Lifespan

  2024cites this paper
• Synthetic Lesions with a Fluorescein Carbamoyl Group As Analogs of Bulky Lesions Removable by Nucleotide Excision Repair: A Comparative Study on Properties

  2024cites this paper
• Pathogenic variants in human DNA damage repair genes mostly arose after the latest human out-of-Africa migration

  2024cites this paper
• Regulation in functional metabolic pathways improves heat tolerance and biomass accumulation of Scenedesmus quadricauda cells

  2024cites this paper
• Roles of DNA damage in renal tubular epithelial cells injury

  2023cites this paper
• Transcriptome analysis of high mortality phenomena in polyploid fish embryos: An allotriploid embryo case study in hybrid grouper (Epinephelus fuscoguttatus ♀ × Epinephelus lanceolatus ♂)

  2023cites this paper
• Nucleotide excision repair removes thymidine analog 5-ethynyl-2′-deoxyuridine from the mammalian genome

  2022cites this paper
• Treatment of Human HeLa Cells with Black Raspberry Extracts Enhances the Removal of DNA Lesions by the Nucleotide Excision Repair Mechanism

  2022cites this paper
• Transcriptomic Analysis of Pacific Oyster (Crassostrea gigas) Zygotes Under Hypotonic Triploid Induction

  2021cites this paper
• DNA adduct formation and reduced EIF4A3expression contributes to Benzo[a]pyrene-induced DNA damage in human bronchial epithelial BEAS-2B cells.

  2021cites this paper
• A Method for Assessing the Efficiency of the Nucleotide Excision Repair System Ex Vivo

  2021cites this paper
• Oral Carcinoma and Therapeutic Approaches of Nanotechnology: From Fundamental Concepts, Incidence, Molecular Mechanism to Emerging Treatment Techniques

  2021cites this paper
• XPA is susceptible to proteolytic cleavage by cathepsin L during lysis of quiescent cells.

  2021cites this paper
• The Interaction Efficiency of XPD-p44 With Bulky DNA Damages Depends on the Structure of the Damage

  2021cites this paper
• Recognition and removal of clustered DNA lesions via nucleotide excision repair.

  2021cites this paper
• Mass spectrometry-based protein‒protein interaction techniques and their applications in studies of DNA damage repair

  2021cites this paper
• A Nobel-Winning Scientist: Aziz Sancar and the Impact of his Work on the Molecular Pathology of Neoplastic Diseases

  2021cites this paper
• UvrC Coordinates an O2-Sensitive [4Fe4S] Cofactor.

  2020cites this paper
• The XRCC4 rs1805377 polymorphism is not associated with the risk of cancer: An updated meta-analysis

  2020cites this paper
• Damage removal and gap filling in nucleotide excision repair.

  2019cites this paper
• Synthesis and Characterization of Site‐Specific O6‐Alkylguanine DNA‐Alkyl Transferase‐Oligonucleotide Crosslinks

  2019cites this paper
• Re-evaluation of the linear no-threshold (LNT) model using new paradigms and modern molecular studies.

  2019cites this paper
• Double-Stranded DNA Fragments Bearing Unrepairable Lesions and Their Internalization into Mouse Krebs-2 Carcinoma Cells

  2019cites this paper
• Structural basis for the recognition and processing of DNA containing bulky lesions by the mammalian nucleotide excision repair system.

  2018cites this paper
• DNA Bearing Bulky Fluorescent and Photoreactive Damage in Both Strands as Substrates of the Nucleotide Excision Repair System

  2018cites this paper
• Genetic variation in the DNA repair pathway as a potential determinant of response to platinum‐based chemotherapy in breast cancer

  2018cites this paper
• Genetic susceptibility to myeloproliferative neoplasms and therapeutic efficacy

  2018cites this paper
• Naked mole rat cells display more efficient excision repair than mouse cells

  2018cites this paper
• Association of DNA repair genes polymorphisms and mutations with increased risk of head and neck cancer: a review

  2017cites this paper
• Polymorphisms in DNA Repair Gene and Susceptibility to Glioma: A Systematic Review and Meta-Analysis Based on 33 Studies with 15 SNPs in 9 Genes

  2017cites this paper
• Hormonal Regulation of the Repair of UV Photoproducts in Melanocytes by the Melanocortin Signaling Axis

  2017cites this paper
• Bringing It All Together: Coupling Excision Repair to the DNA Damage Checkpoint

  2017cites this paper
• Therapeutic potential of investigational CHK-1 inhibitors for the treatment of solid tumors

  2017cites this paper
• Digital gene expression profiling analysis of DNA repair pathways in colon cancer stem population of HT29 cells

  2017cites this paper
• Mechanisms of DNA Repair by Photolyase and Excision Nuclease (Nobel Lecture).

  2016cites this paper
• Mechanismen der DNA‐Reparatur durch Photolyasen und Exzisionsnukleasen (Nobel‐Aufsatz)

  2016cites this paper
• Enhanced nucleotide excision repair capacity in lung cancer cells by preconditioning with DNA-damaging agents

  2015cites this paper
• Characterization of Thioether‐Linked Protein Adducts of DNA Using a Raney‐Ni‐Mediated Desulfurization Method and Liquid Chromatography‐Electrospray‐Tandem Mass Spectrometry

  2015cites this paper
• Analysis of Ribonucleotide Removal from DNA by Human Nucleotide Excision Repair*

  2015cites this paper
• Coupling of Human DNA Excision Repair and the DNA Damage Checkpoint in a Defined in Vitro System*

  2014cites this paper
• Detection and characterization of 1,2-dibromoethane-derived DNA crosslinks formed with O(6) -alkylguanine-DNA alkyltransferase.

  2013cites this paper
• New synthetic substrates of mammalian nucleotide excision repair system

  2013influential citation
• Nucleotide Excision Repair in Human Cells

  2013cites this paper
• Highly specific and sensitive method for measuring nucleotide excision repair kinetics of ultraviolet photoproducts in human cells

  2013cites this paper
• Synthesis of model DNA and their application as substrates of nucleotide excision repair

  2012cites this paper
• Mechanism of Release and Fate of Excised Oligonucleotides during Nucleotide Excision Repair*

  2012cites this paper
• In Vitro Analysis of the Role of Replication Protein A (RPA) and RPA Phosphorylation in ATR-mediated Checkpoint Signaling*

  2012cites this paper
• Fluorescence-based Approaches for Studying Nucleotide Excision Repair

  2011cites this paper
• Photoactivated DNA analogs of substrates of the nucleotide excision repair system and their interaction with proteins of NER-competent extract of HeLa cells. Synthesis and application of long model DNA

  2011cites this paper
• Multiple ATR-Chk1 Pathway Proteins Preferentially Associate with Checkpoint-Inducing DNA Substrates

  2011cites this paper
• The DNA Damage Response Kinases DNA-dependent Protein Kinase (DNA-PK) and Ataxia Telangiectasia Mutated (ATM) Are Stimulated by Bulky Adduct-containing DNA*

  2011cites this paper
• Role of interaction of XPF with RPA in nucleotide excision repair.

  2011cites this paper
• Circadian control of XPA and excision repair of cisplatin-DNA damage by cryptochrome and HERC2 ubiquitin ligase

  2010cites this paper
• Functional analysis of an alternative Replication Protein A complex containing RPA4

  2010influential citation
• Similar nucleotide excision repair capacity in melanocytes and melanoma cells.

  2010cites this paper
• Reconstitution of a human ATR-mediated DNA damage checkpoint response

  2009cites this paper
• Circadian oscillation of nucleotide excision repair in mammalian brain

  2009influential citation
• Effect of cross-link structure on DNA interstrand cross-link repair synthesis.

  2009cites this paper
• An Alternative Form of Replication Protein A Expressed in Normal Human Tissues Supports DNA Repair*

  2009cites this paper
• The influence of repair pathways on the cytotoxicity and mutagenicity induced by the pyridyloxobutylation pathway of tobacco-specific nitrosamines.

  2009cites this paper
• Loss of cryptochrome reduces cancer risk in p53 mutant mice

  2009cites this paper
• Non-traditional platinum compounds for improved cellular accumulation and tumor targeting

  2009cites this paper
• Photoactivated DNA analogs of substrates of the nucleotide excision repair system and their interaction with proteins of NER-competent HeLa cell extract

  2009cites this paper
• Distortion-dependent unhooking of interstrand cross-links in mammalian cell extracts.

  2008cites this paper
• cis-Diammine(pyridine)chloroplatinum(II), a monofunctional platinum(II) antitumor agent: Uptake, structure, function, and prospects

  2008cites this paper
• End modification of a linear DNA duplex enhances NER-mediated excision of an internal Pt(II)-lesion.

  2008cites this paper
• Reconstrução Filogenética de microorganismos a partir da Via de Reparo por Excisão de Nucleotídeo

  2008cites this paper
• Ubiquitylation of proliferating cell nuclear antigen and recruitment of human DNA polymerase eta.

  2008cites this paper
• Small-scale extracts for the study of nucleotide excision repair and non-homologous end joining

  2007cites this paper
• Recognition and repair of trans-syn II cyclobutane thymine dimer by mammalian excision nuclease indicate that the affinities of damage sensors do not dictate the repair efficiency

  2007influential citation
• Reconstitution of a human ATR-mediated checkpoint response to damaged DNA

  2007cites this paper
• Repair of DNA-polypeptide crosslinks by human excision nuclease.

  2006cites this paper
• Repair of DNA–Protein Cross-links in Mammalian Cells

  2006cites this paper
• Xeroderma Pigmentosum Complementation Group E Protein (XPE/DDB2): Purification of Various Complexes of XPE and Analyses of Their Damaged DNA Binding and Putative DNA Repair Properties

  2005cites this paper