Epigenomics and bolting tolerance in sugar beet genotypes

Highlight Sugar beet bolting tolerance is associated, in the shoot apical meristem, with genotype-dependent DNA methylation and expression variations of an integrative gene network involved in environmental perception and flowering.

• Publication year

  2015

• Venue

  Journal of Experimental Botany

• Publication date

  2015-10-13

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/jxb/erv449PMID 26463996PMCID 4682430
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Epigenetic regulation in plant responses to the environment.

  2014influential reference
• Meristem‐specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis

  2014cited by this paper
• The B2 flowering time locus of beet encodes a zinc finger transcription factor

  2014influential reference
• The FLC-like gene BvFL1 is not a major regulator of vernalization response in biennial beets

  2014cited by this paper
• Genetic analysis of bolting after winter in sugar beet (Beta vulgaris L.)

  2014cited by this paper
• Mapping the Epigenetic Basis of Complex Traits

  2014influential reference
• Mediator Subunit18 Controls Flowering Time and Floral Organ Identity in Arabidopsis

  2013cited by this paper
• Genetic diversity and linkage disequilibrium analysis in elite sugar beet breeding lines and wild beet accessions

  2013cited by this paper
• Identification of differentially methylated regions during vernalization revealed a role for RNA methyltransferases in bolting.

  2013influential reference
• Evaluation of MeDIP-chip in the context of whole-genome bisulfite sequencing (WGBS-seq) in Arabidopsis.

  2013cited by this paper
• The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)

  2013influential reference
• Remembering the prolonged cold of winter.

  2013cited by this paper
• The Control Region of Mitochondrial DNA Shows an Unusual CpG and Non-CpG Methylation Pattern

  2013cited by this paper
• Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression

  2012cited by this paper
• The genetic basis of flowering responses to seasonal cues

  2012cited by this paper
• The role of a pseudo-response regulator gene in life cycle adaptation and domestication of beet.

  2012cited by this paper
• A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses

  2012cited by this paper
• Transcriptome and methylome interactions in rice hybrids

  2012influential reference
• Genic DNA methylation changes during in vitro organogenesis: organ specificity and conservation between parental lines of epialleles.

  2012cited by this paper
• Quantitative Modulation of Polycomb Silencing Underlies Natural Variation in Vernalization

  2012cited by this paper
• Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids[W]

  2012cited by this paper
• Genetic identification of a novel bolting locus in Beta vulgaris which promotes annuality independently of the bolting gene B

  2012cited by this paper
• DNA methylation and genome rearrangement characteristics of phase change in cultured shoots of Sequoia sempervirens.

  2012influential reference
• Vernalization – a cold-induced epigenetic switch

  2012cited by this paper
• DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria

  2011cited by this paper
• Characterization of the genome of bald cypress

  2011cited by this paper
• Time course and amplitude of DNA methylation in the shoot apical meristem are critical points for bolting induction in sugar beet and bolting tolerance between genotypes.

  2011influential reference
• Epigenetic control of gene regulation in plants.

  2011cited by this paper
• Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids[W]

  2010cited by this paper
• Relationship between nucleosome positioning and DNA methylation

  2010cited by this paper
• A survey of EMS-induced biennial Beta vulgaris mutants reveals a novel bolting locus which is unlinked to the bolting gene B

  2010cited by this paper
• An Antagonistic Pair of FT Homologs Mediates the Control of Flowering Time in Sugar Beet

  2010influential reference
• Epigenetic characterization of the vegetative and floral stages of azalea buds: dynamics of DNA methylation and histone H4 acetylation.

  2009cited by this paper
• An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)

  2009cited by this paper
• Evolutionary change in flowering phenology in the iteroparous herb Beta vulgaris ssp. maritima: a search for the underlying mechanisms.

  2009cited by this paper
• In vivo methylation of mtDNA reveals the dynamics of protein–mtDNA interactions

  2009cited by this paper
• Modification of gibberellin signalling (metabolism & signal transduction) in sugar beet: analysis of potential targets for crop improvement

  2009cited by this paper
• Methylated DNA immunoprecipitation and microarray-based analysis: detection of DNA methylation in breast cancer cell lines.

  2009cited by this paper
• Evolutionary change in flowering phenology in the iteroparous herb Beta vulgaris ssp. maritima: a search for the underlying mechanisms

  2009cited by this paper
• SENSITIVE TO FREEZING6 Integrates Cellular and Environmental Inputs to the Plant Circadian Clock1[W][OA]

  2008cited by this paper
• High-throughput functional annotation and data mining with the Blast2GO suite

  2008cited by this paper
• Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

  2008cited by this paper
• Sugar beet contains a large CONSTANS-LIKE gene family including a CO homologue that is independent of the early-bolting (B) gene locus

  2008cited by this paper
• Two cysteine proteinase inhibitors from Arabidopsis thaliana, AtCYSa and AtCYSb, increasing the salt, drought, oxidation and cold tolerance

  2008cited by this paper
• Evolutionary Conservation of the FLOWERING LOCUS C-Mediated Vernalization Response: Evidence From the Sugar Beet (Beta vulgaris)

  2007influential reference
• Epigenetic inheritance in plants

  2007cited by this paper
• Cloning of a cDNA encoding a cystatin from grain amaranth (Amaranthus hypochondriacus) showing a tissue-specific expression that is modified by germination and abiotic stress.

  2007cited by this paper
• Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

  2007cited by this paper
• Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

  2006influential reference
• Characterization of the vernalization response in Lolium perenne by a cDNA microarray approach.

  2006cited by this paper
• Leafing through the genomes of our major crop plants: strategies for capturing unique information

  2006cited by this paper
• Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives.

  2006cited by this paper
• 9) TM4 Microarray Software Suite

  2006cited by this paper
• DNA Microarray Analyses in Higher Plants

  2006cited by this paper
• The transcription factor FLC confers a flowering response to vernalization by repressing meristem competence and systemic signaling in Arabidopsis.

  2006cited by this paper
• TM4 microarray software suite.

  2006cited by this paper
• A cold inducible multidomain cystatin from winter wheat inhibits growth of the snow mold fungus, Microdochium nivale

  2006cited by this paper
• FD, a bZIP Protein Mediating Signals from the Floral Pathway Integrator FT at the Shoot Apex

  2005cited by this paper
• The efficacy of Cot-based gene enrichment in wheat (Triticum aestivum L.).

  2005cited by this paper
• Comparative phylogenetic analysis of cystatin gene families from arabidopsis, rice and barley

  2005cited by this paper
• The Handbook of Plant Genome Mapping: Genetic and Physical Mapping

  2005influential reference
• Genome sequencing in microfabricated high-density picolitre reactors

  2005cited by this paper
• Reduced Representation Strategies and Their Application to Plant Genomes

  2005cited by this paper
• Maize cystatins respond to developmental cues, cold stress and drought.

  2005cited by this paper
• High-Cot sequence analysis of the maize genome.

  2003cited by this paper
• TM4: a free, open-source system for microarray data management and analysis.

  2003cited by this paper
• High-resolution mapping of the bolting gene B of sugar beet

  2002cited by this paper
• Integration of Cot analysis, DNA cloning, and high-throughput sequencing facilitates genome characterization and gene discovery.

  2002cited by this paper
• Cell numbers and leaf development in Arabidopsis: a functional analysis of the STRUWWELPETER gene

  2002cited by this paper
• cystatins: protein inhibitors of cysteine proteinases

  2001cited by this paper
• A constitutive cystatin-encoding gene from barley (Icy) responds differentially to abiotic stimuli

  2001cited by this paper
• Loss of FLOWERING LOCUS C Activity Eliminates the Late-Flowering Phenotype of FRIGIDA and Autonomous Pathway Mutations but Not Responsiveness to Vernalization

  2001cited by this paper
• FLOWERING LOCUS C Encodes a Novel MADS Domain Protein That Acts as a Repressor of Flowering

  1999cited by this paper
• An evaluation of the potential benefits and costs of autumn-sown sugarbeet in NW Europe

  1999cited by this paper
• Methylation of mitochondrial DNA in carrot (Daucus carota L.)

  1998cited by this paper
• Structural and phylogenetic relationships among plant and animal cystatins.

  1998cited by this paper
• Isolation of milligram quantities of nuclear DNA from tomato (Lycopersicon esculentum), A plant containing high levels of polyphenolic compounds

  1997cited by this paper
• The complete genome sequence of Escherichia coli K-12.

  1997influential reference
• Identification of RFLP markers closely linked to the bolting gene B and their significance for the study of the annual habit in beets (Beta vulgaris L.)

  1994cited by this paper
• An RNA polymerase II holoenzyme responsive to activators

  1994cited by this paper
• A multiprotein mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II.

  1994cited by this paper
• Effects of increasing weed‐beet density on sugar‐beet yield and quality

  1989cited by this paper
• Localization of the Site of Perception of Thermoinductive Temperatures in Thlaspi arvense L.

  1988cited by this paper
• Methylation pattern of mouse mitochondrial DNA.

  1984cited by this paper
• Influence of external factors on growth and development of sugar-beet (Beta vulgaris L.)

  1983cited by this paper
• Mitochondrial DNA in mortal and immortal human cells. Genome number, integrity, and methylation.

  1983cited by this paper
• DNA sequence organization in the genome of Nicotiana tabacum

  1977cited by this paper
• Genome size and the proportion of repeated nucleotide sequence DNA in plants

  1974cited by this paper
• Differential methylation of mitochondrial and nuclear DNA in cultured mouse, hamster and virus-transformed hamster cells. In vivo and in vitro methylation.

  1973cited by this paper
• Nuclear DNA content and minimum generation time in herbaceous plants

  1972influential reference
• Physiology of flower initiation

  1965cited by this paper
• Dividing Cells as the Prerequisite for Vernalization.

  1964cited by this paper
• Encyclopedia of plant physiology.

  1958cited by this paper
• University of Birmingham High throughput functional annotation and data mining with the Blast2GO suite

  year unknowncited by this paper

• Reconfiguration of DNA methylation at growth resumption after winter dormancy in Kiwifruit

  2025cites this paper
• DNA methylation dynamics in the shoot apical meristem.

  2025cites this paper
• Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

  2023cites this paper
• Root Causes of Flowering: Two Sides of Bolting in Sugar Beet

  2023cites this paper
• Association analysis of agronomic traits and construction of genetic networks by resequencing of 306 sugar beet (Beta vulgaris L.) lines

  2023cites this paper
• Genetic Transformation in Sugar Beet (Beta vulgaris L.): Technologies and Applications

  2022cites this paper
• Genomic and transcriptomic-based analysis of agronomic traits in sugar beet (Beta vulgaris L.) pure line IMA1

  2022cites this paper
• Epigenetics and its role in effecting agronomical traits

  2022cites this paper
• Multi-omics data integration reveals link between epigenetic modifications and gene expression in sugar beet (Beta vulgaris subsp. vulgaris) in response to cold

  2022cites this paper
• Flowering and Seed Production across the Lemnaceae

  2021cites this paper
• Salt stress and salt shock differently affect DNA methylation in salt-responsive genes in sugar beet and its wild, halophytic ancestor

  2021cites this paper
• Methyl jasmonate effects on sugarbeet root responses to postharvest dehydration

  2021cites this paper
• Deciphering the Epigenetic Alphabet Involved in Transgenerational Stress Memory in Crops

  2021cites this paper
• SNP Alleles Associated With Low Bolting Tendency in Sugar Beet

  2021cites this paper
• Epigenetics for Crop Improvement in Times of Global Change

  2021cites this paper
• Flowering time regulation by the miRNA156 in the beet (Beta vulgaris ssp. maritima)

  2021cites this paper
• Plant stress biology in epigenomic era.

  2020cites this paper
• Advances and Promises of Epigenetics for Forest Trees

  2020cites this paper
• [Developmental plasticity in plants: an interaction between hormones and epigenetics at the meristem level].

  2020cites this paper
• From Emergence to Flowering: Four Beet (Beta vulgaris ssp.) Cultivars’ Phenological Response to Seed Priming

  2019cites this paper
• Molecular variation at BvBTC1 is associated with bolting tolerance in Japanese sugar beet

  2019cites this paper
• Phytohormone and Chromatin Crosstalk: The Missing Link For Developmental Plasticity?

  2019cites this paper
• Bolting, an Important Process in Plant Development, Two Types in Plants

  2019cites this paper
• Winter-dormant shoot apical meristem in poplar trees shows environmental epigenetic memory

  2018cites this paper
• Changes in the epigenome and transcriptome of the poplar shoot apical meristem in response to water availability affect preferentially hormone pathways

  2018cites this paper
• Two CONSTANS-LIKE genes jointly control flowering time in beet

  2018cites this paper
• Cross-talk between active DNA demethylation, resetting of cellular metabolism and shoot apical growth in poplar bud break

  2017cites this paper
• Cross-talk between active DNA demethylation , resetting of cellular metabolism and shoot apical growth in poplar bud break Role of active DNA demethylase in trees bud break

  2017cites this paper
• Chilling-responsive DEMETER-LIKE DNA demethylase mediates in poplar bud break.

  2017cites this paper
• Deciphering the complex nature of bolting time regulation in Beta vulgaris

  2017cites this paper
• Méthylation de l’ADN et plasticité phénotypique en réponse à des variations de disponibilité en eau chez le peuplier

  2017cites this paper
• A Detailed Analysis of the BR1 Locus Suggests a New Mechanism for Bolting after Winter in Sugar Beet (Beta vulgaris L.)

  2016cites this paper
• Genome-wide analysis of genes associated with bolting in heading type chinese cabbage

  2016influential citation