Evaluation of MeDIP-chip in the context of whole-genome bisulfite sequencing (WGBS-seq) in Arabidopsis.

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Methods in molecular biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/978-1-62703-607-8_13PMID 23975794
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• R: A language and environment for statistical computing.

  2014cited by this paper
• Genome-wide analysis of DNA methylation in Arabidopsis using MeDIP-chip.

  2014cited by this paper
• MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays

  2012cited by this paper
• DNA methylome analysis using short bisulfite sequencing data

  2012cited by this paper
• Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation

  2012cited by this paper
• Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

  2011cited by this paper
• Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

  2011cited by this paper
• Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq

  2010cited by this paper
• BS Seeker: precise mapping for bisulfite sequencing

  2010cited by this paper
• Principles and challenges of genome-wide DNA methylation analysis

  2010cited by this paper
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010cited by this paper
• Finding the fifth base: genome-wide sequencing of cytosine methylation.

  2009cited by this paper
• Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

  2009cited by this paper
• Comments on sequence normalization of tiling array expression

  2009cited by this paper
• University of Groningen Assessing the Impact of Transgenerational Epigenetic Variation on Complex Traits

  2009cited by this paper
• A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

  2008cited by this paper
• Highly integrated single-base resolution maps of the epigenome in Arabidopsis.

  2008cited by this paper
• Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

  2008cited by this paper
• ChIPmix: mixture model of regressions for two-color ChIP-chip analysis

  2008cited by this paper
• ChIPMonk: software for viewing and analysing ChIP-on-chip data

  2007cited by this paper
• Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription

  2007cited by this paper
• Assessing the need for sequence-based normalization in tiling microarray experiments

  2007cited by this paper
• Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis.

  2006cited by this paper
• Characterizing dye bias in microarray experiments

  2005cited by this paper
• A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences

  2005cited by this paper
• Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

  2005cited by this paper
• Gene‐specific dye bias in microarray reference designs

  2004cited by this paper
• A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

  2003cited by this paper
• DNA Methylation Density Influences the Stability of an Epigenetic Imprint and Dnmt3a/b-Independent De Novo Methylation

  2002cited by this paper
• High sensitivity mapping of methylated cytosines.

  1994cited by this paper
• A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.

  1992cited by this paper
• Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl‐CpG binding protein.

  1992cited by this paper

• Advances in nanotechnology-based platforms for liquid biopsy: Unlocking precision molecular classification in ovarian cancer

  2026cites this paper
• Circulating tumor DNA in cholangiocarcinoma: current clinical applications and future perspectives

  2025cites this paper
• Smaller, cheaper, faster: where next for liquid biopsies?

  2025cites this paper
• Technical Advances in Circulating Cell-Free DNA Detection and Analysis for Personalized Medicine in Patients’ Care

  2024cites this paper
• Epigenetics and plant hormone dynamics: a functional and methodological perspective

  2024cites this paper
• Liquid biopsy in T-cell lymphoma: biomarker detection techniques and clinical application

  2024cites this paper
• Research progress of CTC, ctDNA, and EVs in cancer liquid biopsy

  2024cites this paper
• Next-Generation Sequencing in the Development of Climate-Resilient and Stress-Responsive Crops – A Review

  2024cites this paper
• Exploring the crop epigenome: a comparison of DNA methylation profiling techniques

  2023cites this paper
• Multiplexed Methylated DNA Immunoprecipitation Sequencing (Mx-MeDIP-Seq) to Study DNA Methylation Using Low Amounts of DNA

  2023cites this paper
• Data navigation on the ENCODE portal

  2023cites this paper
• The Role of Liquid Biopsy in the Diagnosis and Prognosis of WHO Grade 4 Astrocytoma

  2023cites this paper
• ctDNA as a novel and promising approach for cancer diagnosis: a focus on hepatocellular carcinoma

  2023cites this paper
• Liquid biopsy: current technology and clinical applications

  2022cites this paper
• Developmental features of DNA methylation in CpG islands of human gametes and preimplantation embryos

  2019cites this paper
• Genomics of forest trees

  2019cites this paper
• Circulating tumor DNA detection: A potential tool for colorectal cancer management

  2018influential citation
• Construction of DNA methylation analysis platform based on high-throughput sequencing

  2018influential citation
• Epigenomics and bolting tolerance in sugar beet genotypes

  2015cites this paper
• Global DNA methylation profiling technologies and the ovarian cancer methylome.

  2015cites this paper
• Mapping the Epigenetic Basis of Complex Traits

  2014cites this paper