Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Genetic Epidemiology

• Publication date

  2005-05-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1002/GEPI.20070PMID 15782414
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Detecting the number of clusters of individuals using the software structure: a simulation study

  2005cited by this paper
• Assessing the impact of population stratification on genetic association studies

  2004cited by this paper
• NOTCH4 gene haplotype is associated with schizophrenia in African Americans.

  2004cited by this paper
• Allelic and haplotypic association of GABRA2 with alcohol dependence

  2004cited by this paper
• BAPS 2: enhanced possibilities for the analysis of genetic population structure

  2004cited by this paper
• FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)

  2004cited by this paper
• Design and analysis of admixture mapping studies.

  2004cited by this paper
• Human population genetic structure and inference of group membership.

  2003cited by this paper
• Informativeness of genetic markers for inference of ancestry.

  2003cited by this paper
• On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals

  2003cited by this paper
• Bayesian analysis of genetic differentiation between populations.

  2003cited by this paper
• Number of SNPS Loci Needed to Detect Population Structure

  2003cited by this paper
• Population stratification and spurious allelic association.

  2003cited by this paper
• Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

  2003cited by this paper
• Control of confounding of genetic associations in stratified populations.

  2003cited by this paper
• Qualitative Semi‐Parametric Test for Genetic Associations in Case‐Control Designs Under Structured Populations

  2003cited by this paper
• Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms.

  2003cited by this paper
• Point: population stratification: a problem for case-control studies of candidate-gene associations?

  2002cited by this paper
• A functional neuropeptide Y Leu7Pro polymorphism associated with alcohol dependence in a large population sample from the United States.

  2002cited by this paper
• Genetic Structure of Human Populations

  2002cited by this paper
• Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms.

  2002cited by this paper
• Counterpoint: bias from population stratification is not a major threat to the validity of conclusions from epidemiological studies of common polymorphisms and cancer.

  2002cited by this paper
• Synergistic polymorphisms of beta1- and alpha2C-adrenergic receptors and the risk of congestive heart failure.

  2002cited by this paper
• Adjusting for population structure in admixed populations

  2002cited by this paper
• Synergistic Polymorphisms of β1- and α2C-Adrenergic Receptors and the Risk of Congestive Heart Failure

  2002cited by this paper
• Detecting association in a case‐control study while correcting for population stratification

  2001cited by this paper
• Bayesian Association Mapping for Quantitative Traits in a Mixture of Two Populations

  2001cited by this paper
• Population genetic structure of variable drug response

  2001cited by this paper
• Joint Modeling of Genetic Association and Population Stratification Using Latent Class Models

  2001cited by this paper
• Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds.

  2001cited by this paper
• Quantitative similarity-based association tests using population samples.

  2001cited by this paper
• Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations.

  2001influential reference
• A Bayesian approach to the identification of panmictic populations and the assignment of individuals.

  2001cited by this paper
• Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model.

  2001cited by this paper
• Association mapping in structured populations.

  2000influential reference
• Searching for genetic determinants in the new millennium

  2000cited by this paper
• Significant admixture linkage disequilibrium across 30 cM around the FY locus in African Americans.

  2000cited by this paper
• Inference of population structure using multilocus genotype data.

  2000cited by this paper
• Genomic Control for Association Studies

  1999cited by this paper

• Comparative QTL analysis and candidate genes identification of seed size, shape and weight in soybean (Glycine max L.)

  2021cites this paper
• Comparison of divergent breeding management strategies in two species of semi-captive eland in Senegal

  2020cites this paper
• High-Resolution Mapping in Two RIL Populations Refines Major “QTL Hotspot” Regions for Seed Size and Shape in Soybean (Glycine max L.)

  2020cites this paper
• The influence of Pleistocene glaciations on Chacoan fauna: genetic structure and historical demography of an endemic frog of the South American Gran Chaco

  2019cites this paper
• Genotyping and Statistical Analysis

  2019cites this paper
• Performance of ancestry-informative SNP and microhaplotype markers.

  2019cites this paper
• Association and cis-mQTL analysis of variants in CHRNA3-A5, CHRNA7, CHRNB2, and CHRNB4 in relation to nicotine dependence in a Chinese Han population

  2018cites this paper
• A protocadherin gene cluster regulatory variant is associated with nicotine withdrawal and the urge to smoke

  2017cites this paper
• Population Stratification in Genetic Association Studies

  2017cites this paper
• Interaction Effects between the Cumulative Genetic Score and Psychosocial Stressor on Drinking Urge and Attentional Bias for Alcohol: A Human Laboratory Study

  2017cites this paper
• The His131Arg substitution in the FCGR2A gene (rs1801274) is not associated with the severity of influenza A(H1N1)pdm09 infection

  2016cites this paper
• Evaluating the Influence of the Microsatellite Marker Set on the Genetic Structure Inferred in Pyrus communis L.

  2015cites this paper
• A CHRNA5 Smoking Risk Variant Decreases the Aversive Effects of Nicotine in Humans

  2015cites this paper
• Deep resequencing of 17 glutamate system genes identifies rare variants in DISC1 and GRIN2B affecting risk of opioid dependence

  2014cites this paper
• The α-endomannosidase gene (MANEA) is associated with panic disorder and social anxiety disorder

  2014cites this paper
• Species limits, phylogeographic and hybridization patterns in Neotropical leaf frogs (Phyllomedusinae)

  2014cites this paper
• FKBP5 variation is associated with the acute and chronic effects of nicotine

  2014cites this paper
• Sampling affects the detection of genetic subdivision and conservation implications for fisher in the Sierra Nevada

  2014cites this paper
• The effects of a MAP2K5 microRNA target site SNP on risk for anxiety and depressive disorders

  2014cites this paper
• Selection of SNP from 50K and 777K arrays to predict breed of origin in cattle.

  2013cites this paper
• Assessing changes in connectivity and abundance through time for fisher in the southern Sierra Nevada

  2013cites this paper
• A Complex Interplay between Personality Domains, Marital Status and a Variant in CHRNA5 on the Risks of Cocaine, Nicotine Dependences and Cocaine-Induced Paranoia

  2013cites this paper
• Chromosome Painting In Silico in a Bacterial Species Reveals Fine Population Structure

  2013cites this paper
• Profiling of Childhood Adversity-Associated DNA Methylation Changes in Alcoholic Patients and Healthy Controls

  2013cites this paper
• GABRA2 markers moderate the subjective effects of alcohol

  2013cites this paper
• Association of Ethnicity with Antipsychotic Dosage Using STRUCTURE Analysis

  2013cites this paper
• Effects of migration patterns on estimates of dispersal rates inferred from genotypic data: a simulation- based study focused on the software STRUCTURE

  2013cites this paper
• potential: preliminary findings in human subjects

  2013cites this paper
• Influence of OPRM1 Asn40Asp variant (A118G) on [11C]carfentanil binding potential: preliminary findings in human subjects.

  2013cites this paper
• Association of CRHR1 variants and posttraumatic stress symptoms in hurricane exposed adults.

  2013cites this paper
• Variation in regulator of G-protein signaling 17 gene (RGS17) is associated with multiple substance dependence diagnoses

  2012cites this paper
• Delimiting genetic units in Neotropical toads under incomplete lineage sorting and hybridization

  2012cites this paper
• Identification of POMC Exonic Variants Associated with Substance Dependence and Body Mass Index

  2012cites this paper
• Serotonin transporter 5‐HTTLPR genotype moderates the effects of childhood adversity on posttraumatic stress disorder risk: A replication study

  2012cites this paper
• Childhood Adversity Increases Risk for Nicotine Dependence and Interacts with α5 Nicotinic Acetylcholine Receptor Genotype Specifically in Males

  2012cites this paper
• Methods for Detecting and Correcting for Population Stratification

  2012cites this paper
• Discernible but limited introgression has occurred where Trichinella nativa and the T6 genotype occur in sympatry.

  2012cites this paper
• GABRG1 and GABRA2 variation associated with alcohol dependence in African Americans.

  2012cites this paper
• What Are Our AIMs? Interdisciplinary Perspectives on the Use of Ancestry Estimation in Disease Research

  2012cites this paper
• The role of host-plant hybridization in host-associated population divergence in Phytomyza glabricola (Diptera: Agromyzidae)

  2012cites this paper
• Monoamine oxidase A regulates antisocial personality in whites with no history of physical abuse.

  2011cites this paper
• Rare nonsynonymous variants in alpha-4 nicotinic acetylcholine receptor gene protect against nicotine dependence.

  2011cites this paper
• Association of CHRNA4 polymorphisms with smoking behavior in two populations

  2011cites this paper
• A common genetic variant in the neurexin superfamily member CNTNAP2 is associated with increased risk for selective mutism and social anxiety-related traits.

  2011cites this paper
• Prédiction de la qualité des bois de chêne pour l’élevage des vins et des alcools : comparaison des approches physicochimiques, sensorielles et moléculaires

  2011cites this paper
• Methodological Considerations in the Study of Leukemia among Genetically and Culturally Heterogeneous Populations

  2011cites this paper
• Variation in the gene encoding the serotonin transporter is associated with a measure of sociopathy in alcoholics

  2011cites this paper
• Characterization of a Bayesian genetic clustering algorithm based on a Dirichlet process prior and comparison among Bayesian clustering methods

  2011cites this paper
• 5-HTTLPR as a potential moderator of the effects of adverse childhood experiences on risk of antisocial personality disorder

  2011cites this paper
• Variation in the Nicotinic Acetylcholine Receptor Gene Cluster CHRNA5–CHRNA3–CHRNB4 and Its Interaction with Recent Tobacco Use Influence Cognitive Flexibility

  2010cites this paper
• Genetic Mapping of Complex Traits

  2010cites this paper
• NPY moderates the relation between hurricane exposure and generalized anxiety disorder in an epidemiologic sample of hurricane‐exposed adults

  2010cites this paper
• ADH1A variation predisposes to personality traits and substance dependence

  2010cites this paper
• COMT, Extraversion, and Partisan Attachment

  2010cites this paper
• Interaction of FKBP5 with Childhood Adversity on Risk for Post-Traumatic Stress Disorder

  2010cites this paper
• Population Stratification, Adjustment for

  2010cites this paper
• Identification of population substructure among Jews using STR markers and dependence on reference populations included

  2010cites this paper
• A functional serotonin transporter gene polymorphism and depressive effects associated with interferon-alpha treatment.

  2010cites this paper
• Susceptibility locus in neurokinin-1 receptor gene associated with alcohol dependence

  2009cites this paper
• Measurement of admixture proportions and description of admixture structure in different U.S. populations

  2009influential citation
• Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex)

  2009cites this paper
• The use of plasmodes as a supplement to simulations: A simple example evaluating individual admixture estimation methodologies

  2009cites this paper
• RGS2 and generalized anxiety disorder in an epidemiologic sample of hurricane‐exposed adults

  2009cites this paper
• Modification of the association between serotonin transporter genotype and risk of posttraumatic stress disorder in adults by county-level social environment.

  2009cites this paper
• Protocol for investigating genetic determinants of posttraumatic stress disorder in women from the Nurses' Health Study II

  2009cites this paper
• MAOA genotype, maltreatment, and aggressive behavior: the changing impact of genotype at varying levels of trauma.

  2009cites this paper
• Genetic variation in 5HTTLPR is associated with emotional resilience

  2009cites this paper
• Association study of DTNBP1 with schizophrenia in a US sample

  2009cites this paper
• The efficacies of clozapine and haloperidol in refractory schizophrenia are related to DTNBP1 variation

  2009cites this paper
• Population admixture modulates risk for alcohol dependence

  2009influential citation
• Variation in RGS2 is Associated with Suicidal Ideation in an Epidemiological Study of Adults Exposed to the 2004 Florida Hurricanes

  2009cites this paper
• Interactive effect of stressful life events and the serotonin transporter 5-HTTLPR genotype on posttraumatic stress disorder diagnosis in 2 independent populations.

  2009cites this paper
• Protocol for investigating genetic determinants of posttraumatic stress disorder in women from the Nurses ' Health Study II

  2009cites this paper
• Association of markers in the 3' region of the GluR5 kainate receptor subunit gene to alcohol dependence.

  2009cites this paper
• Variant in RGS2 moderates posttraumatic stress symptoms following potentially traumatic event exposure.

  2009cites this paper
• Markers in the 5′-Region of GABRG1 Associate to Alcohol Dependence and are in Linkage Disequilibrium with Markers in the Adjacent GABRA2 Gene

  2008cites this paper
• Subspecies genetic assignments of worldwide captive tigers increase conservation value of captive populations.

  2008cites this paper
• GeneticVariantsofNogo-66ReceptorwithPossible AssociationtoSchizophreniaBlockMyelinInhibitionof AxonGrowth

  2008cites this paper
• Genetic Variants of Nogo-66 Receptor with Possible Association to Schizophrenia Block Myelin Inhibition of Axon Growth

  2008cites this paper
• Gene-by-Environment (Serotonin Transporter and Childhood Maltreatment) Interaction for Anxiety Sensitivity, an Intermediate Phenotype for Anxiety Disorders

  2008cites this paper
• ADH7 variation modulates extraversion and conscientiousness in substance‐dependent subjects

  2008cites this paper
• Number of Alleles as a Predictor of the Relative Assignment Accuracy of Short Tandem Repeat (STR) and Single‐Nucleotide‐Polymorphism (SNP) Baselines for Chum Salmon

  2008cites this paper
• Influence of RGS2 on anxiety-related temperament, personality, and brain function.

  2008cites this paper
• Haplotypic variants in DRD2, ANKK1, TTC12, and NCAM1 are associated with comorbid alcohol and drug dependence.

  2008cites this paper
• Interaction between two independent CNR1 variants increases risk for cocaine dependence in European Americans

  2008cites this paper
• Behavioral and Brain Functions

  2008cites this paper
• Multiple OPR genes influence personality traits in substance dependent and healthy subjects in two American populations

  2008cites this paper
• Recessive genetic mode of an ADH4 variant in substance dependence in African-Americans: A model of utility of the HWD test

  2008cites this paper
• Influence of RGS 2 on Anxiety-Related Temperament , Personality , and Brain Function

  2008cites this paper
• The OPRD1 and OPRK1 loci in alcohol or drug dependence: OPRD1 variation modulates substance dependence risk

  2008cites this paper
• A common cortactin gene variation confers differential susceptibility to severe asthma

  2008influential citation
• Mutation screen of the GAD2 gene and association study of alcoholism in three populations

  2007cites this paper
• CNR1 variation modulates risk for drug and alcohol dependence.

  2007cites this paper
• Chimerism and tetragametic chimerism in humans: implications in autoimmunity, allorecognition and tolerance

  2007cites this paper
• Variation in GABRA2 predicts drinking behavior in project MATCH subjects.

  2007cites this paper
• Genetic and environmental predictors of early alcohol use.

  2007cites this paper
• Sequence variation and linkage disequilibrium in the GABA transporter-1 gene (SLC6A1) in five populations: implications for pharmacogenetic research

  2007influential citation
• Genetics of posttraumatic stress disorder: Review and recommendations for future studies.

  2007cites this paper
• Human population structure detection via multilocus genotype clustering

  2007influential citation
• Demographic changes and marker properties affect detection of human population differentiation

  2007cites this paper