Electronic Reprint Biological Crystallography on the Fitting of Model Electron Densities into Em Reconstructions: a Reciprocal-space Formulation

No abstract is available for this paper.

• Publication year

  year unknown

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Not labeled

• Identifiers

  No identifiers available.

• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• The PyMOL Molecular Graphics System

  2002cited by this paper

• Artificial Intelligence Advances for De Novo Molecular Structure Modeling in Cryo-EM

  2021cites this paper
• Advances in Structure Modeling Methods for Cryo-Electron Microscopy Maps

  2019cites this paper
• TORC1 Organised in Inhibited Domains (TOROIDs) regulate TORC1 activity

  2017cites this paper
• ProViz: a tool for explorative 3-D visualization and template matching in electron tomograms

  2017cites this paper
• Structural intermediates in the fusion‐associated transition of vesiculovirus glycoprotein

  2016cites this paper
• Integration of X-ray crystallography and electron cryo-microscopy in the analysis of virus structure and function

  2016cites this paper
• Structural insights into the Escherichia coli lysine decarboxylases and molecular determinants of interaction with the AAA+ ATPase RavA

  2016cites this paper
• Structure Determination of Feline Calicivirus Virus-Like Particles in the Context of a Pseudo-Octahedral Arrangement

  2015cites this paper
• Structural modeling from electron microscopy data

  2015cites this paper
• Structural basis for DNA strand separation by a hexameric replicative helicase

  2015cites this paper
• Integrative Modeling of Biomolecular Complexes: HADDOCKing with Cryo-Electron Microscopy Data.

  2015cites this paper
• Receptor as the Entry Receptor Utilizing Human Epidermal Growth Factor Directed Evolution of a Virus Exclusively

  2014cites this paper
• Cryo-EM near-atomic structure of a dsRNA fungal virus shows ancient structural motifs preserved in the dsRNA viral lineage

  2014cites this paper
• The backbone model of the Arabis mosaic virus reveals new insights into functional domains of Nepovirus capsid.

  2013cites this paper
• Self-organization of the vesicular stomatitis virus nucleocapsid into a bullet shape

  2013cites this paper
• Building a pseudo-atomic model of the anaphase-promoting complex

  2013cites this paper
• Plate Tectonics of Virus Shell Assembly and Reorganization in Phage Φ8, a Distant Relative of Mammalian Reoviruses

  2013influential citation
• Structural and Functional Role of INI1 and LEDGF in the HIV-1 Preintegration Complex

  2013cites this paper
• Recombinant expression, reconstitution and structure of human anaphase-promoting complex (APC/C).

  2013cites this paper
• Directed Evolution of a Virus Exclusively Utilizing Human Epidermal Growth Factor Receptor as the Entry Receptor

  2013cites this paper
• Atomic modeling of cryo-electron microscopy reconstructions--joint refinement of model and imaging parameters.

  2013cites this paper
• Bacteriophage P23-77 Capsid Protein Structures Reveal the Archetype of an Ancient Branch from a Major Virus Lineage

  2013cites this paper
• Cryo-electron microscopy reconstructions of triatoma virus particles: a clue to unravel genome delivery and capsid disassembly.

  2013cites this paper
• Structure determination of macromolecular assemblies by data integration, application to the 26S proteasome

  2012cites this paper
• Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles.

  2012cites this paper
• UCSF Chimera, MODELLER, and IMP: an integrated modeling system.

  2012cites this paper
• Structural basis for a reciprocal regulation between SCF and CSN.

  2012cites this paper
• ATTRACT-EM: A New Method for the Computational Assembly of Large Molecular Machines Using Cryo-EM Maps

  2012cites this paper
• The structure of the 26S proteasome subunit Rpn2 reveals its PC repeat domain as a closed toroid of two concentric α-helical rings.

  2012cites this paper
• Macromolecular assembly structures by comparative modeling and electron microscopy.

  2012cites this paper
• Insights into Minor Group Rhinovirus Uncoating: The X-ray Structure of the HRV2 Empty Capsid

  2012cites this paper
• Architecture of a dodecameric bacterial replicative helicase.

  2012cites this paper
• Atomic model of the human cardiac muscle myosin filament

  2012cites this paper
• Epitope Insertion at the N-Terminal Molecular Switch of the Rabbit Hemorrhagic Disease Virus T=3 Capsid Protein Leads to Larger T=4 Capsids

  2012cites this paper
• Structural insights into the rhabdovirus transcription/replication complex.

  2011cites this paper
• Recalage flexible de modèles moléculaires dans les reconstructions 3D de microscopie électronique

  2011cites this paper
• MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map

  2011cites this paper
• Structural basis for the subunit assembly of the anaphase-promoting complex

  2011cites this paper
• X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution.

  2011cites this paper
• Cryo-EM structure of the E. coli translating ribosome in complex with SRP and its receptor

  2011cites this paper
• Exploring the spatial and temporal organization of a cell's proteome.

  2011cites this paper
• From electron microscopy maps to atomic structures using normal mode-based fitting.

  2010cites this paper
• Crystal Structure of the Entire Ectodomain of gp130

  2010cites this paper
• Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions.

  2010cites this paper
• Structures of APC/CCdh1 with substrates identify Cdh1 and Apc10 as the D-box co-receptor

  2010cites this paper
• Glycoprotein organization of Chikungunya virus particles revealed by X-ray crystallography

  2010cites this paper
• Nucleoprotein-RNA Orientation in the Measles Virus Nucleocapsid by Three-Dimensional Electron Microscopy

  2010cites this paper
• Macromolecular crystal data phased by negative-stained electron-microscopy reconstructions.

  2010cites this paper
• A fast mathematical programming procedure for simultaneous fitting of assembly components into cryoEM density maps

  2010cites this paper
• Structure of the hDmc1-ssDNA Filament Reveals the Principles of Its Architecture

  2010cites this paper
• Direct Observation of Distinct A/P Hybrid-State tRNAs in Translocating Ribosomes

  2010cites this paper
• Distinct structural rearrangements of the VSV glycoprotein drive membrane fusion

  2010cites this paper
• Crystal Structure of Bacteriophage SPP1 Distal Tail Protein (gp19.1)

  2010cites this paper
• Three-dimensional structure of the detergent-solubilized Vibrio cholerae cytolysin (VCC) heptamer by electron cryomicroscopy.

  2010cites this paper
• Proton-driven Assembly of the Rous Sarcoma Virus Capsid Protein Results in the Formation of Icosahedral Particles*

  2010cites this paper
• Molecular Rearrangements Involved in the Capsid Shell Maturation of Bacteriophage T7*♦

  2010cites this paper
• Molecular basis of transcription initiation in Archaea

  2010cites this paper
• Structure and Orientation of Troponin in the Thin Filament*S⃞

  2009cites this paper
• Protein structure determination by electron cryo-microscopy.

  2009cites this paper
• Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating

  2009cites this paper
• Structural basis for HIV-1 DNA integration in the human genome

  2009cites this paper
• Structure and uncoating of immature adenovirus Running title: Structure of immature adenovirus

  2009cites this paper
• Structure and uncoating of immature adenovirus.

  2009cites this paper
• Chaperonin complex with a newly folded protein encapsulated in the folding chamber

  2009cites this paper
• Structural basis for HIV‐1 DNA integration in the human genome, role of the LEDGF/P75 cofactor

  2009cites this paper
• Structural polymorphism of oligomeric adiponectin visualized by electron microscopy.

  2008cites this paper
• Lengsin is a survivor of an ancient family of class I glutamine synthetases in eukaryotes that has undergone evolutionary re-engineering for a role in the vertebrate eye lens.

  2008influential citation
• Location and flexibility of the unique C-terminal tail of Aquifex aeolicus co-chaperonin protein 10 as derived by cryo-electron microscopy and biophysical techniques.

  2008cites this paper
• Integrating diverse data for structure determination of macromolecular assemblies.

  2008cites this paper
• UROX 1.0 : An interactive tool for fitting atomic models into Electron Microscopy reconstructions

  2008cites this paper
• Multiple states of a nucleotide-bound group 2 chaperonin.

  2008cites this paper
• Phasing of the Triatoma virus diffraction data using a cryo-electron microscopy reconstruction.

  2008cites this paper
• Complex oligomeric structure of a truncated form of DdrA: a protein required for the extreme radiotolerance of Deinococcus.

  2008cites this paper
• Damped-dynamics flexible fitting.

  2008cites this paper
• Structural analysis of the Saf pilus by electron microscopy and image processing.

  2008cites this paper
• Structure of the Human 26S Proteasome

  2008cites this paper
• X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution

  2007cites this paper
• ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage

  2007cites this paper
• Infectious Bursal Disease Virus Capsid Assembly and Maturation by Structural Rearrangements of a Transient Molecular Switch (cid:1)

  2007influential citation
• Infectious Bursal Disease Virus Capsid Assembly and Maturation by Structural Rearrangements of a Transient Molecular Switch

  2007influential citation
• Reconfiguration of yeast 40S ribosomal subunit domains by the translation initiation multifactor complex

  2007cites this paper
• The Dynamics of Signal Triggering in a gp130-Receptor Complex

  2007cites this paper
• Topologies of a Substrate Protein Bound to the Chaperonin GroEL

  2007cites this paper
• Quasi-atomic model of bacteriophage t7 procapsid shell: insights into the structure and evolution of a basic fold.

  2007influential citation
• Hexameric ring structure of human MCM10 DNA replication factor

  2007influential citation
• Análisis multidisciplinar de las relaciones estructura-función de los componentes del virus de la bursitis infecciosa

  2007cites this paper
• The Structure of a Putative Scaffolding Protein of Immature Poxvirus Particles as Determined by Electron Microscopy Suggests Similarity with Capsid Proteins of Large Icosahedral DNA Viruses

  2007cites this paper
• Structural determinants of rotavirus subgroup specificity mapped by cryo-electron microscopy.

  2006cites this paper
• Geometric Modeling and Quantitative Visualization of Virus Ultrastructure

  2006cites this paper
• Evolution of bacteriophage tails: Structure of T4 gene product 10.

  2006cites this paper
• Allosteric signaling of ATP hydrolysis in GroEL–GroES complexes

  2006cites this paper
• Lengsin is a survivor of an ancient family of class I glutamine synthetases re-engineered by evolution for a role in the vertebrate lens.

  2006cites this paper
• Les multiples facettes des adénovirus : Focus à travers les dodécaèdres de l'Ad3 humain

  2006cites this paper
• Human kinetochore-associated kinesin CENP-E visualized at 17 A resolution bound to microtubules.

  2006cites this paper
• An Archaeal Peptidase Assembles into Two Different Quaternary Structures

  2006cites this paper
• Cryo-Electron Tomographic Structure of an Immunodeficiency Virus Envelope Complex In Situ

  2006cites this paper
• A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting

  2006cites this paper
• An expanded protein folding cage in the GroEL-gp31 complex.

  2006cites this paper
• The structure of p53 tumour suppressor protein reveals the basis for its functional plasticity

  2006cites this paper
• Structure of the dodecahedral penton particle from human adenovirus type 3.

  2006cites this paper