Non-Mendelian Phenomena in Allopolyploid Genome Evolution

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Current Genomics

• Publication date

  2002-11-30

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.2174/1389202023350255
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Genome evolution in polyploids

  2004cited by this paper
• DNA Methylation Changes in Rice Induced by Zizania Latifolia (Griseb.) DNA Introgression

  2004cited by this paper
• Ty1-copia-retrotransposon Behavior in a Polyploid Cotton

  2004influential reference
• Transposable element contributions to plant gene and genome evolution

  2004cited by this paper
• Polyploidy and the Evolutionary History of Cotton

  2003cited by this paper
• Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes.

  2002cited by this paper
• Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

  2002cited by this paper
• Feast and famine in plant genomes

  2002cited by this paper
• Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C.E. Hubbard (Poaceae).

  2002cited by this paper
• Comparative development of fiber in wild and cultivated cotton

  2001cited by this paper
• Protein-coding genes are epigenetically regulated in Arabidopsis polyploids.

  2001influential reference
• Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes

  2001cited by this paper
• Yesterday's polyploids and the mystery of diploidization

  2001cited by this paper
• Allopolyploidy-Induced Rapid Genome Evolution in the Wheat (Aegilops–Triticum) Group

  2001influential reference
• The Ph1 locus is needed to ensure specific somatic and meiotic centromere association

  2001cited by this paper
• The World Wheat Book: A History of Wheat Breeding

  2001cited by this paper
• Three Tnt1 subfamilies show different stress-associated patterns of expression in tobacco. Consequences for retrotransposon control and evolution in plants.

  2001cited by this paper
• Molecular investigations in populations of Spartina anglica C.E. Hubbard (Poaceae) invading coastal Brittany (France)

  2001cited by this paper
• Sequence Elimination and Cytosine Methylation Are Rapid and Reproducible Responses of the Genome to Wide Hybridization and Allopolyploidy in Wheat

  2001influential reference
• Evolution of genome size: new approaches to an old problem.

  2001cited by this paper
• 2R or not 2R?

  2001cited by this paper
• Are we polyploids? A brief history of one hypothesis.

  2001cited by this paper
• Polyploid formation in cotton is not accompanied by rapid genomic changes.

  2001influential reference
• Contribution of the Tos17 retrotransposon to rice functional genomics.

  2001cited by this paper
• PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION

  2001cited by this paper
• Polyploid formation in cotton is not accompanied by rapid genomic changes

  2001influential reference
• The rice retrotransposon Tos17 prefers low-copy-number sequences as integration targets

  2001cited by this paper
• Reduced Rates of Gene Loss, Gene Silencing, and Gene Mutation in Dnmt1-Deficient Embryonic Stem Cells

  2001cited by this paper
• Genomic change and gene silencing in polyploids.

  2001cited by this paper
• Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

  2001influential reference
• The role of genetic and genomic attributes in the success of polyploids.

  2000cited by this paper
• The origins of genomic duplications in Arabidopsis.

  2000influential reference
• Nucleolar dominance: uniparental gene silencing on a multi-megabase scale in genetic hybrids

  2000cited by this paper
• Species‐specific double‐strand break repair and genome evolution in plants

  2000cited by this paper
• Molecular cytogenetic analyses and phylogenetic studies in the Nicotiana section Tomentosae

  2000cited by this paper
• Amphidiploid Brassica juncea contains conserved progenitor genomes.

  2000cited by this paper
• Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units

  2000cited by this paper
• Transgene silencing by the host genome defense: implications for the evolution of epigenetic control mechanisms in plants and vertebrates

  2000cited by this paper
• Retrotransposon-mediated genome evolution on a local ecological scale.

  2000cited by this paper
• The probability of duplicate gene preservation by subfunctionalization.

  2000cited by this paper
• Genetic and epigenetic interactions in allopolyploid plants

  2000influential reference
• Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

  2000influential reference
• Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis.

  2000influential reference
• Phenotypic Instability and Rapid Gene Silencing in Newly Formed Arabidopsis Allotetraploids

  2000influential reference
• Genome Relationships: The Grass Model in Current Research

  2000cited by this paper
• Novel flowering time variation in the resynthesized polyploid Brassica napus.

  2000cited by this paper
• Copy number lability and evolutionary dynamics of the Adh gene family in diploid and tetraploid cotton (Gossypium).

  2000cited by this paper
• Adaptive diversification within a large family of recently duplicated, placentally expressed genes.

  2000cited by this paper
• Retrotransposon activation followed by rapid repression in introgressed rice plants.

  2000cited by this paper
• MULTILOCUS INTERACTIONS RESTRICT GENE INTROGRESSION IN INTERSPECIFIC POPULATIONS OF POLYPLOID GOSSYPIUM (COTTON)

  2000cited by this paper
• Polyploid incidence and evolution.

  2000cited by this paper
• DNA methylation in health and disease

  2000cited by this paper
• Paramutation in maize

  2000cited by this paper
• Arabidopsis species hybrids in the study of species differences and evolution of amphiploidy in plants.

  2000cited by this paper
• Comparative Genomics of Plant Chromosomes

  2000cited by this paper
• CEREAL CHROMOSOME STRUCTURE, EVOLUTION, AND PAIRING.

  2000cited by this paper
• Coevolution of A and B genomes in allotetraploid Triticum dicoccoides.

  2000cited by this paper
• Transposable elements and host genome evolution.

  2000cited by this paper
• Global methylation in eutherian hybrids

  1999cited by this paper
• Genome evolution: reply: Global methylation in eutherian hybrids

  1999cited by this paper
• Epigenetics: regulation through repression.

  1999cited by this paper
• Nucleolar dominance and silencing of transcription.

  1999cited by this paper
• Duplicated genes evolve independently after polyploid formation in cotton.

  1999cited by this paper
• Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids.

  1999cited by this paper
• Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum.

  1999cited by this paper
• Preservation of duplicate genes by complementary, degenerative mutations.

  1999cited by this paper
• Comparative genetic mapping of allotetraploid cotton and its diploid progenitors

  1999cited by this paper
• Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

  1999cited by this paper
• Physical mapping of ribosomal RNA genes in peonies (Paeonia, Paeoniaceae) by fluorescent in situ hybridization: implications for phylogeny and concerted evolution.

  1999cited by this paper
• Rapid structural and epigenetic changes in polyploid and aneuploid genomes

  1999influential reference
• Plant retrotransposons.

  1999cited by this paper
• Vertebrate genome evolution: a slow shuffle or a big bang?

  1999cited by this paper
• Plant Evolution in man-made Habitats

  1999cited by this paper
• Gene dosage and stochastic effects determine the severity and direction of uniparental ribosomal RNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids.

  1998influential reference
• Elimination of a tandem repeat of telomeric heterochromatin during the evolution of wheat

  1998cited by this paper
• Evolution of interspersed repetitive elements inGossypium (Malvaceae).

  1998influential reference
• Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences

  1998influential reference
• The paleontology of intergene retrotransposons of maize

  1998cited by this paper
• Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

  1998cited by this paper
• Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton.

  1998influential reference
• Gene silencing in plants: relevance for genome evolution and the acquisition of genomic methylation patterns.

  1998cited by this paper
• Genome recombination in intergeneric hybrids between tetraploid Festuca pratensis and Lolium multiflorum

  1998cited by this paper
• Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements.

  1998cited by this paper
• Transposable elements and the evolution of gene expression.

  1998cited by this paper
• Transposable elements associated with normal plant genes

  1998cited by this paper
• Activation of plant retrotransposons under stress conditions

  1998cited by this paper
• Polyploid formation created unique avenues for response to selection in Gossypium (cotton).

  1998cited by this paper
• DNA sequence evidence for the segmental allotetraploid origin of maize.

  1997cited by this paper
• Vertebrate evolution by interspecific hybridisation – are we polyploid?

  1997cited by this paper
• Molecular evidence for an extinct parent of the tetraploid species Microseris acuminata and M. campestris (Asteraceae, Lactuceae)

  1997cited by this paper
• Isolation and characterization of chromosome‐specific DNA sequences from a chromosome arm genomic library of common wheat

  1997influential reference
• Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica.

  1997influential reference
• Polyploidy in angiosperms

  1997cited by this paper
• Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance.

  1997influential reference
• Transposable elements as sources of variation in animals and plants.

  1997cited by this paper
• Retrotransposons of rice: their regulation and use for genome analysis

  1997cited by this paper
• Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes.

  1997influential reference
• Molecular evidence for an ancient duplication of the entire yeast genome

  1997cited by this paper
• Cytosine methylation and the ecology of intragenomic parasites.

  1997cited by this paper
• Evolution of the rice Xa21 disease resistance gene family.

  1997cited by this paper

• Syncytia: From a Historical Resumption to Epigenetic Advances

  2025cites this paper
• Beyond Mendel and Morgan to the dynamic genome

  2025cites this paper
• High-density linkage map and single nucleotide polymorphism association with whole weight, meat yield, and shell shape in the Portuguese oyster, Crassostrea angulata

  2024cites this paper
• Indica-japonica attribute identification and heterosis utilization of diploid rice lines reverted from tetraploid rice

  2023cites this paper
• Festuca pratensis-like Subgenome Reassembly from a “Chromosomal Cocktail” in the Intergeneric Festulolium (Poaceae) Hybrid: A Rare Chromoanagenesis Event in Grasses

  2023cites this paper
• Fluorescent in situ hybridisation in plants: new ways to link DNA sequence resources and chromosome loci – a review

  2022cites this paper
• Antixenosis in cotton genotypes (Gossypium hirsutum var. marie galante) to Spodoptera frugiperda (Lepidoptera: Noctuidae) mediated by trichome and gossypol densities

  2021influential citation
• Speciation

  2021cites this paper
• Brassica Improvement: Molecular, Genetics and Genomic Perspectives

  2020cites this paper
• Genetic Diversity Studies in Indian Mustard (Brassica juncea L. Czern & Coss) Using Molecular Markers

  2020cites this paper
• Brazilian Kayabi Indian accessions of peanut, Arachis hypogaea (Fabales, Fabaceae): origin, diversity and evolution

  2020cites this paper
• The effects of hybridization and genome doubling in plant evolution via allopolyploidy

  2020cites this paper
• An Introduction to Global Production Trends and Uses, History and Evolution, and Genetic and Biotechnological Improvements in Cotton

  2019cites this paper
• Epigenetic inheritance and plant evolution

  2019cites this paper
• Whole Genome Incorporation and Epigenetic Stability in a Newly Synthetic Allopolyploid of Gynogenetic Gibel Carp

  2018cites this paper
• Distribuição do modo de ocorrência in situ de landraces de algodoeiro Semiárido Brasileiro

  2018cites this paper
• In vivo conservation of agro-biodiversity: A selective but practical approach for its sustainable utilization

  2018cites this paper
• FISH-aimed karyotype analysis in Aconitum subgen. Aconitum reveals excessive rDNA sites in tetraploid taxa

  2018cites this paper
• Nuclear genome size and chromosome number in the Mexican genus Pittocaulon (Asteraceae)

  2018cites this paper
• Clustering

  2017cites this paper
• Genome Characterization of In Vitro Induced Amphiploids of an Intergeneric Hybrid Erianthus arundinaceus × Saccharum spontaneum

  2017cites this paper
• Concerted evolution rapidly eliminates sequence variation in rDNA coding regions but not in intergenic spacers in Nicotiana tabacum allotetraploid

  2017cites this paper
• Analysis of allopolyploidy-induced rapid genetic and epigenetic changes and their relationship in wheat.

  2017cites this paper
• Reorganization of wheat and rye genomes in octoploid triticale (× Triticosecale)

  2017cites this paper
• Chimeras Linked to Tandem Repeats and Transposable Elements in Tetraploid Hybrid Fish

  2017cites this paper
• Chimeras Link to Tandem Repeats and Transposable Elements in Tetraploid Hybrid Fish

  2016cites this paper
• Oil palm in vitro regeneration: microdensitometric analysis during reproduction and development

  2016cites this paper
• Chromosome numbers and meiotic behaviour of the genus Paracaryum (Boraginaceae) from Iran

  2016cites this paper
• Breeding and Cytogenetic Characterizations of New Hexaploid Drosera Strains Colchicine-Induced from Triploid Hybrid of D. rotundifolia and D. spatulata

  2016cites this paper
• Chimeric Genes Revealed in the Polyploidy Fish Hybrids of Carassius cuvieri (Female) × Megalobrama amblycephala (Male)

  2016cites this paper
• Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish × common carp cross

  2016cites this paper
• The effect of different genome and cytoplasm on meiotic pairing in maize newly synthetic polyploids

  2016cites this paper
• Application of BSP Method to the Methylation Detection of BZIP17 Homologous Genes in Allotetraploid Raphanobrassica and Its Parents

  2016cites this paper
• Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites

  2015cites this paper
• Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)

  2015cites this paper
• Origin and Reticulate Evolutionary Process of Wheatgrass Elymus trachycaulus (Triticeae: Poaceae)

  2015cites this paper
• rDNA Genetic Imbalance and Nucleolar Chromatin Restructuring Is Induced by Distant Hybridization between Raphanus sativus and Brassica alboglabra

  2015cites this paper
• Transcriptomic changes following synthesis of a Populus full-sib diploid and allotriploid population with different heterozygosities driven by three types of 2n female gamete

  2015cites this paper
• Microsatellite analysis of chromosomes from the fifth homoeologous group in the introgressive Triticum aestivum/Amblyopyrum muticum wheat lines

  2015cites this paper
• Extended metAFLP approach in studies of tissue culture induced variation (TCIV) in triticale

  2014cites this paper
• The detection of a de novo allele of the Glu-1Dx gene in wheat–rye hybrid offspring

  2014cites this paper
• Cytoplasmic and Genomic Effects on Non-Meiosis-Driven Genetic Changes in Brassica Hybrids and Allotetraploids from Pairwise Crosses of Three Cultivated Diploids

  2013cites this paper
• Molecular and Phenotypic Characterization of Advanced Backcross Lines Derived from Interspecific Hybridization of Durum Wheat

  2013cites this paper
• Polyploid organisms

  2012cites this paper
• A molecular cytogenetic analysis of chromosome behavior in Lilium hybrids

  2012cites this paper
• Next-generation sequencing and genome evolution in allopolyploids.

  2012cites this paper
• SUGARCANE AND POLYPLOIDY-A REVIEW

  2012influential citation
• Phylogenetic Inference and Allopolyploid Speciation

  2012cites this paper
• The evolutionary history of the white-rayed species of Melampodium (Asteraceae) involved multiple cycles of hybridization and polyploidization.

  2012cites this paper
• Gene and Genome Duplications in Plants

  2011cites this paper
• Parental epigenetic difference in DNA methylation-level may play contrasting roles for different agronomic traits related to yield heterosis in maize

  2011cites this paper
• Loss of rRNA loci in autotetraploid Parnassia palustris (Celastraceae)

  2011cites this paper
• First Evidence for Hybrid Breakdown in the Backcross of Olive Flounder, Paralichthys olivaceus, and Summer Flounder, Paralichthys dentatus

  2011cites this paper
• DNA Methylation in Genomes of Several Annual Herbaceous and Woody Perennial Plants of Varying Ploidy as Detected by MSAP

  2011influential citation
• The cytological instability of neoallopolyploids suggesting a potent way for DNA introgression: The case of synthetic hexaploid wheat × Aegilops peregrina

  2011cites this paper
• Interspecific Hybrids of Hordeum marinum ssp. marinum × H. bulbosum Are Mitotically Stable and Reveal No Gross Alterations in Chromatin Properties

  2010cites this paper
• Instability of chromosome number and DNA methylation variation induced by hybridization and amphidiploid formation between Raphanus sativus L. and Brassica alboglabra Bailey

  2010cites this paper
• Gene capture from across the grass family in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics.

  2010cites this paper
• Phylogenetic and phyloclimatic inference of the evolution of Potentilleae (Rosaseae)

  2010cites this paper
• Production and genetic analysis of partial hybrids from intertribal sexual crosses between Brassica napus and Isatis indigotica and progenies.

  2010cites this paper
• Genome Size Study in the Valerianaceae: First Results and New Hypotheses

  2010cites this paper
• Rapid genomic alteration in an 'incompatible' pair of maize reciprocal F1 hybrids--a possible cause for the accumulation of inter-strain genetic diversity.

  2010cites this paper
• An alternative approach to medical genetics based on modern evolutionary biology. Part 5: epigenetics and genomics

  2009cites this paper
• Allopolyploid-Induced Sequence Elimination

  2009cites this paper
• Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium)

  2009cites this paper
• Genetic characterization of asymmetric reciprocal hybridization between the flatfishes Paralichthys olivaceus and Paralichthys dentatus

  2009cites this paper
• Transcript Profiling Provides Evidence of Functional Divergence and Expression Networks among Ribosomal Protein Gene Paralogs in Brassica napus[W][OA]

  2009cites this paper
• Origins of domestication and polyploidy in oca (Oxalis tuberosa; Oxalidaceae). 3. AFLP data of oca and four wild, tuber-bearing taxa.

  2009cites this paper
• Different genome-specific chromosome stabilities in synthetic Brassica allohexaploids revealed by wide crosses with Orychophragmus.

  2009cites this paper
• Allopolyploid origin of Mediterranean species in Helictotrichon (Poaceae) and its consequences for karyotype repatterning and homogenisation of rDNA repeat units

  2009cites this paper
• Gene Expression Evolution Following Hybridization and Genome Duplication in Cotton (genus Gossypium)

  2009cites this paper
• Rapid genomic changes in polyploid wheat and related species: implications for genome evolution and genetic improvement.

  2009influential citation
• The effect of the ploidy level and genetic background of Sphagnum denticulatum on its morphology and ecological requirements

  2009cites this paper
• Responses of the Cotton Genome to Polyploidy

  2009cites this paper
• Genetic recombination in Sorghum bicolor S . macrospermum interspecific hybrids Les

  2008cites this paper
• Towards engineering increased pantothenate (vitamin B5) levels in plants

  2008cites this paper
• Fixation of hybrid vigor in rice: opportunities and challenges

  2008cites this paper
• Allopolyploidization-accommodated genomic sequence changes in triticale.

  2008cites this paper
• Genetic recombination in Sorghum bicolor x S. macrospermum interspecific hybrids.

  2008cites this paper
• Wild and agronomically important Agave species (Asparagaceae) show proportional increases in chromosome number, genome size, and genetic markers with increasing ploidy

  2008cites this paper
• Changes of cytosine methylation induced by wide hybridization and allopolyploidy in Cucumis.

  2008cites this paper
• Comparison of newly synthetic hexaploid wheat with its donors on SSR products.

  2007cites this paper
• Polyploidy Breeding of African Nightshade (Solanum section Solanum)

  2007cites this paper
• Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids.

  2007cites this paper
• The plant genome's methylation status and response to stress: implications for plant improvement.

  2007cites this paper
• Cytological diploidization and rapid genome changes of the newly synthesized allotetraploids Cucumis × hytivus

  2007cites this paper
• TRIPSACUM GENETICS: FROM OBSERVATIONS ALONG A RIVER TO MOLECULAR GENOMICS

  2007cites this paper
• Molecular Evolution of MADS-box Genes in Cotton ( Gossypium L.)

  2007cites this paper
• Ancestry Influences the Fate of Duplicated Genes Millions of Years After Polyploidization of Clawed Frogs (Xenopus)

  2007cites this paper
• Mechanizmy zmian genomowych i zmian w ekspresji genow w mieszancowych poliploidalnych roslinach

  2007cites this paper
• Genome polymorphisms and gene differential expression in a 'back-and-forth' ploidy-altered series of weeping lovegrass (Eragrostis curvula).

  2007cites this paper
• Effects of polyploidy on photosynthetic properties and anatomy in leaves of Phlox drummondii.

  2007cites this paper
• Genomic Evolution of Brassica Allopolyploids Revealed by ISSR Marker

  2006cites this paper
• A Bayesian Approach for Discriminating Among Alternative Inheritance Hypotheses in Plant Polyploids: The Allotetraploid Origin of Genus Borderea (Dioscoreaceae)

  2006cites this paper
• Genome size variation in the genus Carthamus (Asteraceae, Cardueae): systematic implications and additive changes during allopolyploidization.

  2006cites this paper
• Timing and rate of genome variation in triticale following allopolyploidization.

  2006cites this paper
• GluDy allele variations in Aegilops tauschii and Triticum aestivum: implications for the origins of hexaploid wheats

  2006influential citation
• Innovation in anti-herbivore defense systems during neopolypoloidy - the functional consequences of instantaneous speciation.

  2006cites this paper
• Genomic evolutionary changes in Aegilops allopolyploids revealed by ISSR markers

  2006cites this paper
• The paleopolyploid nature of the soybean genome: duplicate gene identification, regional sequence characterization and expression studies

  2006cites this paper