Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men

No abstract is available for this paper.

• Publication year

  2014

• Venue

  The ISME Journal

• Publication date

  2014-04-24

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ismej.2014.63PMID 24763370PMCID PMC4992075
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Complete genome of a new Firmicutes species belonging to the dominant human colonic microbiota ('Ruminococcus bicirculans') reveals two chromosomes and a selective capacity to utilize plant glucans.

  2014cited by this paper
• Gut Microbiota Signatures Predict Host and Microbiota Responses to Dietary Interventions in Obese Individuals

  2014influential reference
• Faecal levels of Bifidobacterium and Clostridium coccoides but not plasma lipopolysaccharide are inversely related to insulin and HOMA index in women.

  2013cited by this paper
• Inter-individual differences in response to dietary intervention: integrating omics platforms towards personalised dietary recommendations

  2013cited by this paper
• Diabetes, obesity and gut microbiota.

  2013cited by this paper
• Dietary intervention impact on gut microbial gene richness

  2013cited by this paper
• Diet rapidly and reproducibly alters the human gut microbiome

  2013cited by this paper
• In vitro characterization of the impact of selected dietary fibers on fecal microbiota composition and short chain fatty acid production.

  2013cited by this paper
• Impact of Short Term Consumption of Diets High in Either Non-Starch Polysaccharides or Resistant Starch in Comparison with Moderate Weight Loss on Indices of Insulin Sensitivity in Subjects with Metabolic Syndrome

  2013influential reference
• Intake of whole-grain and fiber-rich rye bread versus refined wheat bread does not differentiate intestinal microbiota composition in Finnish adults with metabolic syndrome.

  2013cited by this paper
• Colonic bacterial metabolites and human health.

  2013cited by this paper
• The role of the gut microbiota in nutrition and health

  2012cited by this paper
• Structure, Function and Diversity of the Healthy Human Microbiome

  2012cited by this paper
• Human gut microbiome viewed across age and geography

  2012cited by this paper
• Immuno-microbiota cross and talk: the new paradigm of metabolic diseases.

  2012cited by this paper
• Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

  2012cited by this paper
• Microbial degradation of complex carbohydrates in the gut

  2012cited by this paper
• Gut microbiome composition is linked to whole grain-induced immunological improvements

  2012cited by this paper
• Gut microbiota composition correlates with diet and health in the elderly

  2012cited by this paper
• Insight into the prebiotic concept: lessons from an exploratory, double blind intervention study with inulin-type fructans in obese women

  2012cited by this paper
• Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

  2011cited by this paper
• Dominant and diet-responsive groups of bacteria within the human colonic microbiota

  2011influential reference
• Predicting a Human Gut Microbiota’s Response to Diet in Gnotobiotic Mice

  2011cited by this paper
• Fermentation in the Human Large Intestine: Its Physiologic Consequences and the Potential Contribution of Prebiotics

  2011cited by this paper
• Obesity and the Gut Microbiota

  2011cited by this paper
• Intestinal Microbiota in Healthy Adults: Temporal Analysis Reveals Individual and Common Core and Relation to Intestinal Symptoms

  2011influential reference
• High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health.

  2011cited by this paper
• Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

  2010cited by this paper
• Resistant Starches Types 2 and 4 Have Differential Effects on the Composition of the Fecal Microbiota in Human Subjects

  2010cited by this paper
• Interactions between gut microbiota, host genetics and diet relevant to development of metabolic syndromes in mice

  2010cited by this paper
• A human gut microbial gene catalogue established by metagenomic sequencing

  2010cited by this paper
• Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: effective recovery of bacterial and archaeal DNA using mechanical cell lysis.

  2010cited by this paper
• Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

  2009cited by this paper
• Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults

  2009influential reference
• Integrative top-down system metabolic modeling in experimental disease states via data-driven Bayesian methods.

  2008cited by this paper
• Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii

  2008influential reference
• Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

  2008cited by this paper
• Selective increases of bifidobacteria in gut microflora improve high-fat-diet-induced diabetes in mice through a mechanism associated with endotoxaemia

  2007cited by this paper
• The capacity of short-chain fructo-oligosaccharides to stimulate faecal bifidobacteria: a dose-response relationship study in healthy humans

  2006cited by this paper
• Reduced Dietary Intake of Carbohydrates by Obese Subjects Results in Decreased Concentrations of Butyrate and Butyrate-Producing Bacteria in Feces

  2006influential reference
• Wheat bran affects the site of fermentation of resistant starch and luminal indexes related to colon cancer risk: a study in pigs

  1999cited by this paper
• Simultaneous determination of volatile and non‐volatile acidic fermentation products of anaerobes by capillary gas chromatography

  1989cited by this paper
• The new S language: a programming environment for data analysis and graphics

  1988cited by this paper

• Dietary interventions and the gut microbiota: a systematic literature review of 80 controlled clinical trials

  2026influential citation
• A Comparison of the Response of the Human Intestinal Microbiota to Probiotic and Nutritional Interventions In Vitro and In Vivo—A Case Study

  2025cites this paper
• The Role of Short-Chain Fatty Acids in Metabolic Dysfunction-Associated Steatotic Liver Disease and Other Metabolic Diseases

  2025cites this paper
• The Gut Microbiota Is Altered in Antidepressant‐Free Depressed Patients and Is Associated With Depression Severity

  2025cites this paper
• Papaya Peel Nata as a Novel Dietary Fiber Source for Glycemic Control and Gut Microbiome Restoration in Streptozotocin-Induced Diabetic Rats

  2025cites this paper
• Metabolic Phenotypes, Genotypes, and Gut Microbiome Signatures in Obesity: Implications for Precision Nutrition Strategies in Type 2 Diabetes Prevention

  2025cites this paper
• Cardiometabolic benefits of a non-industrialized-type diet are linked to gut microbiome modulation.

  2025cites this paper
• Exploring the microbiota-gut-brain axis: impact on brain structure and function

  2025cites this paper
• Gut microbiota–cholesterol crosstalk in cardiovascular diseases: mechanisms, metabolites, and therapeutic modulation

  2025cites this paper
• Bio-Accessibility of Phenolic Compounds from Green Banana-Fortified Bread During Simulated Digestion and Colonic Fermentation

  2025cites this paper
• Butyrate Produced by Gut Microbiota Regulates Atherosclerosis: A Narrative Review of the Latest Findings

  2025cites this paper
• The Emerging Role of the Gut Microbiome in Cerebral Cavernous Malformation: A New Novel Therapeutic Strategy?

  2025cites this paper
• The Influence of an AI-Driven Personalized Nutrition Program on the Human Gut Microbiome and Its Health Implications

  2025cites this paper
• Marmot gut microbiomes are stable against dietary variation

  2025cites this paper
• Treatment of Acute Ulcerative Colitis with Zinc Hyaluronate in Mice

  2025cites this paper
• The impact of regular sauerkraut consumption on the human gut microbiota: a crossover intervention trial

  2025cites this paper
• Diet Supplementation with Pomegranate Fruit Alters Distal Gut Microbiota of Healthy Female College Students

  2025cites this paper
• Antibiotic-mediated dysbiosis leads to activation of inflammatory pathways

  2025cites this paper
• Effects of Time-Restricted Eating (Early and Late) Combined with Energy Restriction vs. Energy Restriction Alone on the Gut Microbiome in Adults with Obesity

  2025cites this paper
• The gut microbiome as a target in cancer immunotherapy: opportunities and challenges for drug development

  2025cites this paper
• Exploring the concept of bacterial memory

  2025cites this paper
• Soluble lignin: a potential prebiotic modulating gut microbiota and short-chain fatty acid production in in vitro fermentation.

  2025cites this paper
• The interconnection between dietary fibre, gut microbiome and psychological well-being.

  2025cites this paper
• Curcumin ameliorates hepatic steatosis and insulin resistance through the JNK2/FOXO1/Bcl6 axis and regulate the intestinal flora structure

  2025cites this paper
• Exploring Relationships Within the Microbiome of Root Canal Infections and the Influence of Associated Clinical Parameters

  2025cites this paper
• Mulberry (Morus alba) Twig and Leaf Extracts Ameliorate Obesity-Related Metabolic Disorders via Gut Microbiota Modulation in High-Fat Diet-Fed Mice

  2025cites this paper
• Starch-entrapped microspheres selectively promote propionate or butyrate production through individual-specific modulation of the human fecal microbiome.

  2025cites this paper
• Bi-Directional Relationship Between Bile Acids (BAs) and Gut Microbiota (GM): UDCA/TUDCA, Probiotics, and Dietary Interventions in Elderly People

  2025cites this paper
• Inulin-induced improvements on bowel habit and gut microbiota in adults with functional constipation: findings of a randomized, double-blind, placebo-controlled study

  2025cites this paper
• Gut Microbiota and Metabolic Modulation by Slow-Release Protein Substitutes in Phenylketonuria: Findings from the PREMP Study

  2025cites this paper
• The impact of pooling on the observed microbiome profile of preweaned piglet feces

  2025cites this paper
• Offspring metabolic programming via the maternal diet increases susceptibility to metabolic dysregulation

  2025cites this paper
• Circulating metabolite signatures indicate differential gut-liver crosstalk in lean and obese MASLD

  2025cites this paper
• Effects of drinking water fructo-oligosaccharide supplementation on broiler chicken growth performance, blood glucose level, white blood cell count, carcass yield, meat quality, and cecal microbiota

  2025cites this paper
• Interactions between gut microbes and host promote degradation of various fiber components in Meishan pigs

  2025cites this paper
• Influence of dietary protein and fiber intake interactions on the human gut microbiota composition and function: a systematic review and network meta-analysis of randomized controlled trials

  2025influential citation
• Consumption of only wild foods induces large scale, partially persistent alterations to the gut microbiome

  2025cites this paper
• Effect of Wheat Dextrin Fiber on the Fecal Microbiome and Short-Chain Fatty Acid Concentrations in Dogs: Randomized, Single-Blinded, Parallel-Group Clinical Trial

  2025cites this paper
• Comparative Study on the Effects of Selenium-Enriched Yeasts with Different Selenomethionine Contents on Gut Microbiota and Metabolites

  2025cites this paper
• Dietary fibre responses in microbiota reveal opportunity for disease-specific prebiotic approaches.

  2025cites this paper
• Microbiota and detrimental protein derived metabolites in colorectal cancer.

  2024cites this paper
• Rethinking the classification of non-digestible carbohydrates: Perspectives from the gut microbiome.

  2024cites this paper
• Barley β-glucan consumption improves glucose tolerance by increasing intestinal succinate concentrations

  2024cites this paper
• Stimulation of microbial butyrate synthesis through prebiotics

  2024cites this paper
• Recent developments in enzymatic preparation, physicochemical properties, bioactivity, and application of resistant starch type III from staple food grains.

  2024cites this paper
• The role of gut-derived short-chain fatty acids in Parkinson's disease

  2024cites this paper
• Effects of Synbiotic Administration on Gut Microbiome and Fecal Bile Acids in Dogs with Chronic Hepatobiliary Disease: A Randomized Case–Control Study

  2024cites this paper
• Barriers in translating existing nutrigenetics insights to precision nutrition for cardiometabolic health in ethnically diverse populations.

  2024cites this paper
• Correlation between gut microbiota characteristics and non-small cell lung cancer based on macrogenomics sequencing

  2024cites this paper
• Intestinal gases as a non-invasive measurement of microbial fermentation and host health.

  2024cites this paper
• Exploring the Interplay: Oral–Gut Microbiome Connection and the Impact of Diet and Nutrition

  2024cites this paper
• Effects of high dose aspartame-based sweetener on the gut microbiota and bone strength in young and aged mice

  2024cites this paper
• Non-invasive ventilation restores the gut microbiota in rats with acute heart failure

  2024cites this paper
• Impacts of Whole-Grain Soft Red, Whole-Grain Soft White, and Refined Soft White Wheat Flour Crackers on Gastrointestinal Inflammation and the Gut Microbiota of Adult Humans

  2024cites this paper
• Gut bacterial quorum sensing molecules and their association with inflammatory bowel disease: Advances and future perspectives.

  2024cites this paper
• Identification of novel fructo-oligosaccharide bacterial consumers by pulse metatranscriptomics in a human stool sample

  2024cites this paper
• Traditional Chinese medicine to improve immune imbalance of asthma: focus on the adjustment of gut microbiota

  2024cites this paper
• A New Plant Active Polysaccharide from Nicotiana Improves the Lead-Led Impairment of Spatial Memory in Mice by Modulating the Gut Microbiota and IL-6

  2024cites this paper
• A Comprehensive Pilot Study to Elucidate the Distinct Gut Microbial Composition and Its Functional Significance in Cardio-Metabolic Disease

  2024cites this paper
• Effect of Barley and Oat Consumption on Immune System, Inflammation and Gut Microbiota: A Systematic Review of Randomized Controlled Trials

  2024cites this paper
• Dietary fibre supplementation enhances radiotherapy tumour control and alleviates intestinal radiation toxicity

  2024cites this paper
• Linking microbiome temporal dynamics to host ecology in the wild.

  2024cites this paper
• Diet-microbiota associations in gastrointestinal research: a systematic review

  2024influential citation
• Why does increased microbial fermentation in the human colon shift toward butyrate?

  2024cites this paper
• Modulation of gut microbiota and metabolites by Flammulina velutipes polysaccharides during in vitro human fecal fermentation: Unveiling Bacteroides as a potential primary degrader.

  2024cites this paper
• In vitro digestion and fermentation characteristics of eight kinds of pulses and suggestions for different populations.

  2024cites this paper
• Regulation of microbial gene expression: the key to understanding our gut microbiome.

  2024cites this paper
• Bioaccessibility of Phenolic Compounds, Resistant Starch, and Dietary Fibers from Australian Green Banana during In Vitro Digestion and Colonic Fermentation

  2024cites this paper
• Moderate variations in the human diet impact the gut microbiota in humanized mice

  2024cites this paper
• Individual gut microbiological signature in obese diabetic spouses – case report and literature review

  2024cites this paper
• The Association between the Gut Microbiota and Erectile Dysfunction

  2024cites this paper
• Consumption of only wild foods induces large-scale, partially-persistent alterations to the gut microbiome

  2024cites this paper
• Effects of different foods and cooking methods on the gut microbiota: an in vitro approach

  2024cites this paper
• Modulation of the Gut Microbiota by Nutrition and Its Relationship to Epigenetics

  2024cites this paper
• Effect of the Combination of Clostridium butyricum and Mycelium of Phellinus igniarius on Intestinal Microbiota and Serum Metabolites in DSS-Induced Colitis

  2024cites this paper
• ACOD1 deficiency offers protection in a mouse model of diet-induced obesity by maintaining a healthy gut microbiota

  2024cites this paper
• Characterization of a secreted aminopeptidase of M28 family from B. fragilis and its possible role in protein metabolism in the gut.

  2024cites this paper
• The Future Landscape and Framework of Precision Nutrition

  2024cites this paper
• Modeling Dynamics of Human Gut Microbiota Derived from Gluten Metabolism: Obtention, Maintenance and Characterization of Complex Microbial Communities

  2024cites this paper
• Deleterious Effects of Yoyo Dieting and Resistant Starch on Gastrointestinal Morphology

  2024cites this paper
• The Development and Evaluation of a Literature-Based Dietary Index for Gut Microbiota

  2024cites this paper
• The Effects of Food Nutrients and Bioactive Compounds on the Gut Microbiota: A Comprehensive Review

  2024cites this paper
• An ecological and stochastic perspective on persisters resuscitation

  2024cites this paper
• Response of laying hens fed diet supplemented with a mixture of olive, laurel, and rosemary leaf powders: Metabolic profile, oxidative status, intestinal histomorphology, and egg quality.

  2024cites this paper
• Evaluating the effects of intrinsic and isolated arabinoxylans on human gut microbiota and short-chain fatty acids: A systematic review and meta-analysis

  2024cites this paper
• Effect of rice bran fermented with Ligilactobacillus equi on in vitro fermentation profile and microbial population.

  2024cites this paper
• Prebiotics in food and dietary supplements: a roadmap to EU health claims

  2024cites this paper
• Kajian Manfaat Diet Mediterania

  2024cites this paper
• Effects of synbiotics surpass probiotics alone in improving type 2 diabetes mellitus: A randomized, double-blind, placebo-controlled trial.

  2024cites this paper
• The effect of complementary foods on the colonic microbiota of weaning infants: a systematic review

  2024cites this paper
• The role of gut microbiota in a generalist, golden snub-nosed monkey, adaptation to geographical diet change

  2024cites this paper
• Garcinol enriched fraction of Garcinia morella (Gaertn.) Desr. fruit rind improves gut health and reduces the risk of nonalcoholic fatty liver disease by regulating PCK1/ACC/SREBP1/FASn pathway in a mouse model.

  2024cites this paper
• Host genetics and gut microbiota influence lipid metabolism and inflammation: potential implications for ALS pathophysiology in SOD1G93A mice

  2024cites this paper
• Polysaccharides to postbiotics: Nurturing bone health via modulating "gut-immune axis".

  2024cites this paper
• The impact of daily supplementation with rhamnogalacturonan-I on the gut microbiota in healthy adults: A randomized controlled trial.

  2024cites this paper
• Design and reporting of prebiotic and probiotic clinical trials in the context of diet and the gut microbiome

  2024cites this paper
• Unraveling the Gut Microbiota: Implications for Precision Nutrition and Personalized Medicine

  2024cites this paper
• Response of the gut microbiome and metabolome to dietary fiber in healthy dogs

  2024cites this paper
• Microbiote et Nutrition

  2024cites this paper
• Effects of food emulsifiers on high fat-diet-induced obesity, intestinal inflammation, changes in bile acid profile, and liver dysfunction.

  2023cites this paper