Clustering Gene Expression Patterns

No abstract is available for this paper.

• Publication year

  1999

• Venue

  J. Comput. Biol.

• Publication date

  1999-04-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1089/106652799318274PMID 10582567
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Elements of Information Theory

  2005cited by this paper
• An algorithm for clustering cDNAs for gene expression analysis

  1999cited by this paper
• Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays.

  1999influential reference
• Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation.

  1999cited by this paper
• DNA arrays for analysis of gene expression.

  1999cited by this paper
• Large-scale temporal gene expression mapping of central nervous system development.

  1998cited by this paper
• Gene expression profiling of alveolar rhabdomyosarcoma with cDNA microarrays.

  1998cited by this paper
• Finding a large hidden clique in a random graph

  1998cited by this paper
• Cluster analysis and display of genome-wide expression patterns.

  1998cited by this paper
• Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

  1998cited by this paper
• Deterministic annealing for clustering, compression, classification, regression, and related optimization problems

  1998cited by this paper
• Large Deviations Techniques and Applications

  1998influential reference
• Characterization of the yeast transcriptome.

  1997cited by this paper
• Exploring the metabolic and genetic control of gene expression on a genomic scale.

  1997cited by this paper
• Expression monitoring by hybridization to high-density oligonucleotide arrays

  1996cited by this paper
• Mathematical Classification and Clustering

  1996cited by this paper
• Sequence to array: Probing the genome's secrets

  1996cited by this paper
• Developmental kinetics of GAD family mRNAs parallel neurogenesis in the rat spinal cord

  1995influential reference
• Expected Complexity of Graph Partitioning Problems

  1995cited by this paper
• Cluster Analysis (3rd Edition)

  1994cited by this paper
• [Internal initiation of translation in eukaryotes].

  1991cited by this paper
• Improved chips for sequencing by hybridization.

  1991cited by this paper
• Hybridization analyses of arrayed cDNA libraries.

  1991cited by this paper
• The First International Conference on Electrophoresis, Supercomputing and the Human Genome

  1991cited by this paper
• Mathematical Statistics and Data Analysis

  1988influential reference
• Pattern classification and scene analysis

  1974cited by this paper
• Pattern classification and scene analysis

  1974cited by this paper
• A Measure of Asymptotic Efficiency for Tests of a Hypothesis Based on the sum of Observations

  1952cited by this paper

• Оценка сложности кластеризации графа в задачах Cluster Deletion и Cluster Editing с ограничениями на размеры кластеров

  2026cites this paper
• Graph Clustering Problems Under the Lens of Parameterized Local Search

  2026cites this paper
• A greedy and optimistic clustering for leveraging individual covariate uncertainty

  2025cites this paper
• Cluster deletion and clique partitioning in graphs with bounded clique number

  2025cites this paper
• Clustering Single-Cell RNA Sequencing Data Using LEIDEN Algorithm

  2025cites this paper
• Hybrid Attentive Graph Neural Networks for time series gene expression clustering

  2025cites this paper
• Clustering methods for high-dimensional data

  2025cites this paper
• Improved Approximation Algorithms for Chromatic and Pseudometric-Weighted Correlation Clustering

  2025cites this paper
• Improved Parameterized Algorithms for Cluster Vertex Deletion

  2025cites this paper
• Correcting a Graph Into a Linegraph Minimizing Hamming Distance Edition Is NP-Complete and FPT by Treewidth

  2025cites this paper
• A Simple and Fast (3 + ε)-approximation for Constrained Correlation Clustering

  2025cites this paper
• SMILES alignment: a dynamic programming approach for the alignment of metabolites and other small organic molecules

  2025cites this paper
• 1.64-Approximation for Chromatic Correlation Clustering via Chromatic Cluster LP

  2025cites this paper
• Cell identity and 5-hydroxymethylcytosine

  2025cites this paper
• Cluster Vertex Deletion Problems on Cubic Graphs

  2025cites this paper
• Algorithms and Complexity of Hedge Cluster Deletion Problems

  2025cites this paper
• Correlation clustering for general graphs

  2025cites this paper
• Welcome Pathogens: Transient Heat Dampens Immune Responses to Acibenzolar‐S‐Methyl in Apple Plants

  2025influential citation
• Robust hierarchical co-clustering for exploring toxicogenomic biomarkers and their chemical regulators

  2025cites this paper
• Structural Parameterization of Cluster Deletion

  2025cites this paper
• Approximation algorithms for the cluster editing problem with small clusters

  2025cites this paper
• Economic and statistical analysis of current trends in “green” energy development

  2024cites this paper
• scDFN: enhancing single-cell RNA-seq clustering with deep fusion networks

  2024cites this paper
• Query-Efficient Correlation Clustering with Noisy Oracle

  2024cites this paper
• A bisection method for solving distance-based clustering problems globally

  2024cites this paper
• Discovery and functional characterization of two novel glycosyltransferases associated with the biosynthesis of α-hederin in Dipsacus asperoides.

  2024cites this paper
• Network Topology Evaluation and Transitive Alignments for Molecular Networking.

  2024cites this paper
• Denoising autoencoder-based soft K-medoid clustering for single-cell RNA sequence data

  2024cites this paper
• Algorithms for 2-club cluster deletion problems using automated generation of branching rules

  2024cites this paper
• A Convolutional Deep Neural Network Approach for miRNA Clustering

  2024cites this paper
• Long-read sequencing reveals extensive gut phageome structural variations driven by genetic exchange with bacterial hosts

  2024cites this paper
• Combinatorial Approximations for Cluster Deletion: Simpler, Faster, and Better

  2024cites this paper
• Approximation Algorithms for Graph Clustering Problems with Clusters of Bounded Size

  2024cites this paper
• Fast Evaluation of Additive Kernels: Feature Arrangement, Fourier Methods, and Kernel Derivatives

  2024cites this paper
• Decomposition of dynamic transcriptomic responses during effector-triggered immunity reveals conserved responses in two distinct plant cell populations

  2024cites this paper
• γ-clustering problems: Classical and parametrized complexity

  2024cites this paper
• Graph-based density peak merging for identifying multi-peak clusters

  2023cites this paper
• PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach

  2023cites this paper
• Bayesian outcome-guided multi-view mixture models with applications in molecular precision medicine

  2023cites this paper
• Statistical analysis of high-dimensional biomedical data: a gentle introduction to analytical goals, common approaches and challenges

  2023cites this paper
• Fair Correlation Clustering in Forests

  2023cites this paper
• Cluster Editing parameterized above modification-disjoint normalnormalP3-packings

  2023cites this paper
• Fast Combinatorial Algorithms for Min Max Correlation Clustering

  2023cites this paper
• On the Parameterized Complexity of s-club Cluster Deletion Problems

  2023cites this paper
• Solving NP-hard problems on GaTEx graphs: Linear-time algorithms for perfect orderings, cliques, colorings, and independent sets

  2023cites this paper
• Correlation Clustering and Two-Edge-Connected Augmentation for Planar Graphs

  2023cites this paper
• scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering

  2023cites this paper
• Dynamic decomposition of transcriptome responses during plant effector-triggered immunity revealed conserved responses in two distinct cell populations

  2023cites this paper
• Spatiotemporal Variograms as Neighborhood Definers

  2023cites this paper
• On the use of evolutionary and swarm intelligence algorithms in transfer learning approaches: a review

  2023cites this paper
• scGeneRythm: Using Neural Networks and Fourier Transformation to Cluster Genes by Time-Frequency Patterns in Single-Cell Data

  2023cites this paper
• 2k-Vertex Kernels for Cluster Deletion and Strong Triadic Closure

  2023cites this paper
• Feature Extraction with Differential Evolution Algorithm

  2023cites this paper
• Deep Multi-Constraint Soft Clustering Analysis for Single-Cell RNA-Seq Data via Zero-Inflated Autoencoder Embedding

  2023cites this paper
• Compatibility of Clique Clustering Algorithm with Dimensionality Reduction

  2023cites this paper
• Molecular Engineering to Achieve AIE-active Fluorophore with Near-infrared (NIR) Emission and Temperature-sensitive Property

  2023cites this paper
• Simultaneously Approximating All $\ell_p$-norms in Correlation Clustering

  2023cites this paper
• Faster Approximation Algorithms for Parameterized Graph Clustering and Edge Labeling

  2023cites this paper
• Developing a New Phylogeny-Driven Random Forest Model for Functional Metagenomics

  2023cites this paper
• SCM Enables Improved Single-Cell Clustering by Scoring Consensus Matrices

  2023cites this paper
• A New Temporal Interpretation of Cluster Editing

  2022cites this paper
• Adaptive Bayesian variable clustering via structural learning of breast cancer data

  2022influential citation
• Chromatic Correlation Clustering, Revisited

  2022cites this paper
• Explainable Clustering Applied to the Definition of Terrestrial Biomes

  2022cites this paper
• Clustering by peak merging

  2022cites this paper
• An Algebraic Approach to Clustering and Classification with Support Vector Machines

  2022cites this paper
• Molecular Investigation of miRNA Biomarkers as Chemoresistance Regulators in Melanoma: A Protocol for Systematic Review and Meta-Analysis

  2022cites this paper
• An Invitation to Higher Arity Science

  2022cites this paper
• Identification of ESCC potential biomarkers using biclustering algorithms

  2022cites this paper
• A New Phylogeny-Driven Random Forest-Based Classification Approach for Functional Metagenomics

  2022cites this paper
• A Literature Review on Correlation Clustering: Cross-disciplinary Taxonomy with Bibliometric Analysis

  2022cites this paper
• s-Club Cluster Vertex Deletion on Interval and Well-Partitioned Chordal Graphs

  2022cites this paper
• Partitional clustering via successive transportation problems

  2022cites this paper
• SGAClust: Semi-supervised Graph Attraction Clustering of gene expression data

  2022influential citation
• Research Article Comments on the Clique Number of Zero-Divisor Graphs of Z n

  2022cites this paper
• A Greedy and Optimistic Approach to Clustering with a Specified Uncertainty of Covariates

  2022cites this paper
• Unsupervised Learning Applied to the Stratification of Preterm Birth Risk in Brazil with Socioeconomic Data

  2022cites this paper
• Bilateral discriminative autoencoder model orienting co-representation learning

  2022cites this paper
• Comments on the Clique Number of Zero-Divisor Graphs of <math xmlns="http://www.w3.org/1998/Math/MathML" id="M1"> <msub> <mrow> <mi>Z</mi> </mrow> <mrow>

  2022cites this paper
• On the Parametrized Complexity of the s-Club Cluster Edge Deletion Problem

  2022cites this paper
• A Clinical Investigation on the Theragnostic Effect of MicroRNA Biomarkers for Survival Outcome in Cervical Cancer: A PRISMA-P Compliant Protocol for Systematic Review and Comprehensive Meta-Analysis

  2022cites this paper
• Correlation Clustering

  2022cites this paper
• Convergence analysis of connection center evolution and faster clustering

  2022cites this paper
• Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM

  2022cites this paper
• Clustering with Queries under Semi-Random Noise

  2022cites this paper
• Four Algorithms for Correlation Clustering: A Survey

  2022cites this paper
• Applying a Cut-Based Data Reduction Rule for Weighted Cluster Editing in Polynomial Time

  2022influential citation
• Automated Detection of Electric Energy Consumption Load Profile Patterns

  2022cites this paper
• An introduction to new robust linear and monotonic correlation coefficients

  2021cites this paper
• Unsupervised Algorithms for Microarray Sample Stratification.

  2021cites this paper
• The PACE 2021 Parameterized Algorithms and Computational Experiments Challenge: Cluster Editing

  2021cites this paper
• Indonesian netizens expressions potentially satire with the COVID-19 pandemic on social media Facebook

  2021cites this paper
• GenCAT: Generating Attributed Graphs with Controlled Relationships between Classes, Attributes, and Topology

  2021cites this paper
• Random walk elephant swarm water search algorithm for identifying order-preserving submatrices in gene expression data: a new approach using elephant swarm water search algorithm

  2021cites this paper
• LipGene: Lipschitz Continuity Guided Adaptive Learning Rates for Fast Convergence on Microarray Expression Data Sets

  2021cites this paper
• Building Arabic Paraphrasing Benchmark based on Transformation Rules

  2021cites this paper
• A Color-blind 3-Approximation for Chromatic Correlation Clustering and Improved Heuristics

  2021cites this paper
• Correlation Clustering via Strong Triadic Closure Labeling: Fast Approximation Algorithms and Practical Lower Bounds

  2021influential citation
• Leveraging the partition selection bias to achieve a high-quality clustering of mass spectra.

  2021cites this paper
• Multiobjective optimization technique for gene selection and sample categorization

  2021cites this paper