Selective constraint dominates the evolution of genes expressed in a novel reproductive gland.

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Molecular biology and evolution

• Publication date

  2014-09-05

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/molbev/msu259PMID 25193339
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Predictors of fertilization in the Japanese quail , Coturnix japonica

  2018cited by this paper
• Mating systems and protein–protein interactions determine evolutionary rates of primate sperm proteins

  2014cited by this paper
• The Molecular Evolution of Animal Reproductive Tract Proteins: What Have We Learned from Mating-System Comparisons?

  2014cited by this paper
• A Comparison of Next Generation Sequencing Technologies for Transcriptome Assembly and Utility for RNA-Seq in a Non-Model Bird

  2014cited by this paper
• R: A language and environment for statistical computing.

  2014cited by this paper
• Pollen-specific, but not sperm-specific, genes show stronger purifying selection and higher rates of positive selection than sporophytic genes in Capsella grandiflora.

  2013influential reference
• A nonsemen copulatory fluid influences the outcome of sperm competition in Japanese quail

  2013influential reference
• Tissue-Specific Transcriptomics in the Field Cricket Teleogryllus oceanicus

  2013influential reference
• Genetic Disruption of the Copulatory Plug in Mice Leads to Severely Reduced Fertility

  2013cited by this paper
• Insights into the evolution of Darwin’s finches from comparative analysis of the Geospiza magnirostris genome sequence

  2013cited by this paper
• The evolutionary causes and consequences of sex-biased gene expression

  2013cited by this paper
• Comparative population genomics of the ejaculate in humans and the great apes.

  2013cited by this paper
• Rates of Evolution of Hominoid Seminal Proteins are Correlated with Function and Expression, Rather than Mating System

  2013cited by this paper
• ParaAT: a parallel tool for constructing multiple protein-coding DNA alignments.

  2012influential reference
• Gene duplication, tissue-specific gene expression and sexual conflict in stalk-eyed flies (Diopsidae)

  2012cited by this paper
• Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

  2012influential reference
• Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species

  2012cited by this paper
• The role of the male cloacal gland in reproductive success in Japanese quail (Coturnix japonica).

  2012influential reference
• SignalP 4.0: discriminating signal peptides from transmembrane regions

  2011influential reference
• Towards a more nuanced understanding of the relationship between sex-biased gene expression and rates of protein-coding sequence evolution.

  2011cited by this paper
• Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data

  2011cited by this paper
• Cloacal gland foam enhances motility and disaggregation of spermatozoa in Japanese quail (Coturnix japonica).

  2011cited by this paper
• Elevated Evolutionary Rates among Functionally Diverged Reproductive Genes across Deep Vertebrate Lineages

  2011cited by this paper
• DECOUPLING OF RAPID AND ADAPTIVE EVOLUTION AMONG SEMINAL FLUID PROTEINS IN HELICONIUS BUTTERFLIES WITH DIVERGENT MATING SYSTEMS

  2011cited by this paper
• Characterization of lactate dehydrogenase enzyme in seminal plasma of Japanese quail (Coturnix coturnix japonica).

  2011cited by this paper
• VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

  2011cited by this paper
• The biology and evolution of polyspermy: insights from cellular and functional studies of sperm and centrosomal behavior in the fertilized egg.

  2011cited by this paper
• Comparative proteomics uncovers the signature of natural selection acting on the ejaculate proteomes of two cricket species isolated by postmating, prezygotic phenotypes.

  2011cited by this paper
• The Molecular Evolution of Animal Reproductive Tract Proteins: What Have We Learned from Mating-System Comparisons?

  2011cited by this paper
• A scaling normalization method for differential expression analysis of RNA-seq data

  2010influential reference
• Sperm competition and sperm length influence the rate of mammalian spermatogenesis

  2010influential reference
• Sexual Selection and the Molecular Evolution of ADAM Proteins

  2010cited by this paper
• Combined EST and proteomic analysis identifies rapidly evolving seminal fluid proteins in Heliconius butterflies.

  2010cited by this paper
• Comparing de novo assemblers for 454 transcriptome data

  2010cited by this paper
• TESTING THE EFFECTS OF MATING SYSTEM VARIATION ON RATES OF MOLECULAR EVOLUTION IN PRIMATES

  2010cited by this paper
• Sperm proteomics reveals intensified selection on mouse sperm membrane and acrosome genes.

  2010influential reference
• Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness

  2009cited by this paper
• Genotype–phenotype associations: substitution models to detect evolutionary associations between phenotypic variables and genotypic evolutionary rate

  2009cited by this paper
• Ejaculate–female and sperm–female interactions

  2009cited by this paper
• Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus).

  2009influential reference
• Molecular social interactions: Drosophila melanogaster seminal fluid proteins as a case study.

  2009cited by this paper
• FASTER FERTILIZATION RATE IN CONSPECIFIC VERSUS HETEROSPECIFIC MATINGS IN HOUSE MICE

  2009cited by this paper
• edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

  2009influential reference
• The Sequence Alignment/Map format and SAMtools

  2009cited by this paper
• Evidence of adaptive evolution of accessory gland proteins in closely related species of the Drosophila repleta group.

  2008cited by this paper
• Evo‐Devo and an Expanding Evolutionary Synthesis

  2008cited by this paper
• Evolution of protein-coding genes in Drosophila.

  2008influential reference
• Adaptive Evolution of Gamete-Recognition Proteins in Birds

  2008cited by this paper
• Searching for candidate speciation genes using a proteomic approach: seminal proteins in field crickets

  2008cited by this paper
• Mapping and quantifying mammalian transcriptomes by RNA-Seq

  2008cited by this paper
• Causes and consequences of the evolution of reproductive proteins.

  2008cited by this paper
• A multigene phylogeny of Galliformes supports a single origin of erectile ability in non-feathered facial traits

  2008influential reference
• Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating

  2008cited by this paper
• Adaptive evolution of proteins secreted during sperm maturation: an analysis of the mouse epididymal transcriptome.

  2008influential reference
• Comparative Analysis of Testis Protein Evolution in Rodents

  2008cited by this paper
• Analyzing real-time PCR data by the comparative CT method

  2008cited by this paper
• Gene Duplication and Adaptive Evolution of Digestive Proteases in Drosophila arizonae Female Reproductive Tracts

  2007cited by this paper
• SEQUENCE EVOLUTION OF THE SPERM LIGAND ZONADHESIN CORRELATES NEGATIVELY WITH BODY WEIGHT DIMORPHISM IN PRIMATES

  2007cited by this paper
• Adaptive Evolution in an Avian Reproductive Protein: ZP3

  2007cited by this paper
• Sexual selection and the adaptive evolution of mammalian ejaculate proteins.

  2007cited by this paper
• Clustal W and Clustal X version 2.0

  2007influential reference
• PAML 4: phylogenetic analysis by maximum likelihood.

  2007influential reference
• Comparative sequence analyses reveal rapid and divergent evolutionary changes of the WFDC locus in the primate lineage.

  2007cited by this paper
• The evolution of sex-biased genes and sex-biased gene expression

  2007cited by this paper
• KaKs_Calculator: Calculating Ka and Ks Through Model Selection and Model Averaging

  2007influential reference
• The evolutionary significance of cis-regulatory mutations

  2007cited by this paper
• Molecular evolution of seminal proteins in field crickets.

  2006influential reference
• PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

  2006influential reference
• Genomic and functional evolution of the Drosophila melanogaster sperm proteome

  2006influential reference
• Evolution of reproductive proteins from animals and plants.

  2006cited by this paper
• Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins.

  2006cited by this paper
• Complexity of seminal fluid: a review

  2006cited by this paper
• Rapid evolution of reproductive proteins in abalone and Drosophila

  2006cited by this paper
• Molecular Population Genetics of Accessory Gland Protein Genes and Testis-Expressed Genes in Drosophila mojavensis and D. arizonae

  2005cited by this paper
• Pervasive Adaptive Evolution in Primate Seminal Proteins

  2005influential reference
• OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups

  2005cited by this paper
• Why highly expressed proteins evolve slowly.

  2005cited by this paper
• Evolution at Two Levels: On Genes and Form

  2005cited by this paper
• Parallel Patterns of Evolution in the Genomes and Transcriptomes of Humans and Chimpanzees

  2005cited by this paper
• Evolution at Two Levels : On Genes and Form

  2005cited by this paper
• Rates of protein evolution are positively correlated with developmental timing of expression during mouse spermatogenesis.

  2005cited by this paper
• A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics

  2005cited by this paper
• Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

  2005cited by this paper
• Testing for adaptive evolution of the female reproductive protein ZPC in mammals, birds and fishes reveals problems with the M7-M8 likelihood ratio test

  2005cited by this paper
• Orthologs, Paralogs, and Evolutionary Genomics 1

  2005cited by this paper
• OrfPredictor: predicting protein-coding regions in EST-derived sequences

  2005cited by this paper
• Orthologs, paralogs, and evolutionary genomics.

  2005cited by this paper
• Comprehensive Algorithm for Quantitative Real-Time Polymerase Chain Reaction

  2005cited by this paper
• Normalization of Real-Time Quantitative Reverse Transcription-PCR Data: A Model-Based Variance Estimation Approach to Identify Genes Suited for Normalization, Applied to Bladder and Colon Cancer Data Sets

  2004cited by this paper
• Mammalian housekeeping genes evolve more slowly than tissue-specific genes.

  2004cited by this paper
• Rate of molecular evolution of the seminal protein gene SEMG2 correlates with levels of female promiscuity

  2004cited by this paper
• Theoretical and practical advances in genome halving

  2004cited by this paper
• Common pattern of evolution of gene expression level and protein sequence in Drosophila.

  2004cited by this paper
• OrthoMCL: identification of ortholog groups for eukaryotic genomes.

  2003influential reference
• The origin of new genes: glimpses from the young and old

  2003cited by this paper
• Pair Bonding and Multiple Paternity in the Polygamous Common Quail Coturnix coturnix

  2003cited by this paper
• Reproductive Protein Evolution

  2002influential reference
• Sperm competition: Motility and the midpiece in primates

  2002cited by this paper
• The rapid evolution of reproductive proteins

  2002influential reference
• Highly expressed genes in yeast evolve slowly.

  2001cited by this paper

• RNA sequencing analysis of sexual dimorphism in Japanese quail

  2024cites this paper
• Genetic parameters for cloacal gland, sexual maturity, reproductive organs weight, and body weight in meat-type quail.

  2024cites this paper
• Synthesis and Scope of the Role of Postmating Prezygotic Isolation in Speciation.

  2023cites this paper
• Population genomics reveals mechanisms and dynamics of de novo expressed open reading frame emergence in Drosophila melanogaster

  2023cites this paper
• Population genomics reveals mechanisms and dynamics of de novo proto-gene emergence in Drosophila melanogaster

  2022cites this paper
• Nonadaptive molecular evolution of seminal fluid proteins in Drosophila

  2021cites this paper
• Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina

  2021cites this paper
• Quantifying expression variability in single-cell RNA sequencing data

  2019cites this paper
• Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids

  2019cites this paper
• Evolution of the Highly Repetitive PEVK Region of Titin Across Mammals

  2018cites this paper
• Genetic diversity and molecular evolution of Ornithogalum mosaic virus based on the coat protein gene sequence

  2018cites this paper
• Genes Integral to the Reproductive Function of Male Reproductive Tissues Drive Heterogeneity in Evolutionary Rates in Japanese Quail

  2017influential citation
• The Seminal fluid proteome of the polyandrous Red junglefowl offers insights into the molecular basis of fertility, reproductive ageing and domestication

  2016cites this paper
• Accelerated rates of protein evolution in barley grain and pistil biased genes might be legacy of domestication

  2015cites this paper