Genome Instability Mediates the Loss of Key Traits by Acinetobacter baylyi ADP1 during Laboratory Evolution

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Journal of Bacteriology

• Publication date

  2014-12-15

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/JB.02263-14PMID 25512307PMCID PMC4325111
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2008influential reference
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  1993cited by this paper
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  1990cited by this paper
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  1969cited by this paper

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