Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

No abstract is available for this paper.

• Publication year

  2019

• Venue

  Nature Biotechnology

• Publication date

  2019-08-09

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1038/s41587-019-0252-6PMID 31399723
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• No references are available for this paper.

• Application of high carbon amendments stabilizes soil microbial community composition and improves microbial recovery after a late spring drought during winter wheat cultivation

  2026cites this paper
• Impact of variable aeration on partial nitritation/anammox (PN/A): Insights from batch testing and microbial analysis

  2026cites this paper
• Nitrogen fixation, crop production and bacterial communities of common bean cultivars: a 77-year breeding perspective

  2026cites this paper
• Effect of evolocumab on the gut microbiota in patients with acute myocardial infarction

  2026influential citation
• Maternal supplementation of functional fiber improves reproduction performance by modulating gut microbiota during pregnancy

  2026cites this paper
• Integrated microbiota and metabolomic analysis demonstrates the growth-promoting effects of Lactobacillus plantarum in Nile tilapia (Oreochromis nilotica)

  2026cites this paper
• In vitro comparative analysis of steamed wood and other lignocellulosic substrates on ruminal fermentation and microbiota

  2026cites this paper
• The legacy of mining revealed by environmental DNA: long-term ecological structuring of marine benthic communities after the Fundão dam collapse

  2026influential citation
• Grassland type exerts a stronger influence than grazing on the abundance, structure, and diversity of active diazotrophic communities in Mongolian natural grassland soils

  2026cites this paper
• The microbial mechanism of the impact of grazing degradation on the soil multifunctionality of the hummock wetland on the riverscape

  2026cites this paper
• Chronic early life stress alters the microbial and transcriptional profile of the zebrafish gut

  2026cites this paper
• Machine learning assessment of molecular trophic diatom index (mTDI) using planktonic eDNA for water quality in freshwater ecosystems

  2026cites this paper
• Predictive monitoring, identification, and control of Microcystis blooms in a drinking water source basin: An integrative artificial intelligence and bioinformatics approach.

  2026cites this paper
• Testing a Farm Animal Model for Experimental Kidney Graft Transplantation: Gut Microbiota, Mycobiome and Metabolic Profiles as Indicators of Model Stability and Suitability

  2026cites this paper
• Genomic Characterization of a Mycoplasma ovipneumoniae Strain from Hu Sheep in Inner Mongolia, China

  2026cites this paper
• Influence of Nest Microbiota on Hatching Success of Caretta Caretta on Lampedusa Island

  2026cites this paper
• Optimization of DADA2 in QIIME2 for improving fidelity in 16S rRNA V4 amplicon data analysis

  2026influential citation
• Impacts of host genetics on gut microbiome composition in Alzheimer's disease.

  2026cites this paper
• Epigenetic and microbiome responses to greens supplementation in obese older adults: results from a randomized crossover-controlled trial.

  2026cites this paper
• Cattle excreta on Lotus tenuis-promoted grasslands: Exploring soil microbiome and nitrous oxide emissions in the Salado River Basin, Argentina

  2026cites this paper
• Cedrol ameliorates ulcerative colitis via myeloid differentiation factor 2-mediated inflammation suppression, with barrier restoration and microbiota modulation

  2026cites this paper
• Characterization and Validation of the Antibacterial Activity of Heyndrickxia coagulans BHE26 Against Helicobacter pylori

  2026cites this paper
• Effects of biochar combined with Trichoderma brevicompactum 6311 on pepper phytophthora blight and pepper growth

  2026cites this paper
• Does soil inoculation truly steer the composition of native soil communities?

  2026cites this paper
• Legionella petroniana sp. nov., a novel species isolated in Bologna, Italy: taxonomic, genomic and ecological insights in the era of environmental change.

  2026cites this paper
• DNA and RNA-based amplicon sequencing of paired supragingival and dentin lesion plaque in children with severe early childhood caries

  2026cites this paper
• Lung microbial dysregulation and TNF inhibition contribute to worsened nontuberculous mycobacterial lung disease

  2026cites this paper
• Endometrial microbiota-dimethylglycine-Treg cell axis affects endometrial receptivity in recurrent implantation failure.

  2026cites this paper
• Contrasting Patterns of Phyllosphere Fungal Diversity Between Angiosperms and Gymnosperms Along a Subalpine‐Elevation Gradient

  2025influential citation
• Gut microbiota distinguishes aging hispanics with Alzheimer’s disease: associations with cognitive impairment and severity

  2025cites this paper
• Dysbiosis associated with enhanced microbial mobility across the respiratory tract in pulmonary tuberculosis patients

  2025cites this paper
• Landslide deposits caused by shallow landslides alter the redox regime in forested catchments: insights from hydrochemical and microbial analyses

  2025cites this paper
• Characterizing the Fermentation of Oat Grass (Avena sativa L.) in the Rumen: Integrating Degradation Kinetics, Ultrastructural Examination with Scanning Electron Microscopy, Surface Enzymatic Activity, and Microbial Community Analysis

  2025cites this paper
• Positive Correlation Between Economic Activities and Fish Diversity in Small River Basins of Less Developed Regions: A Case Study of the Lixian River Basin

  2025cites this paper
• Kitchen waste composting leachate stimulates endogenous simultaneous nitrifying and denitrifying pathways in WWTPs.

  2025cites this paper
• Earthworms mitigate drought effects on microbial decomposition of straw under varying microplastic conditions.

  2025cites this paper
• Coupling between bacterial phylogenetic diversity and heterotrophic productivity in a coastal ecosystem affected by estuarine plumes

  2025cites this paper
• Rootstock microbiome as a target for manipulation to combat apple replant disease

  2025cites this paper
• Gut microbiome and diet contribute to ecological niche differentiation between argali (Ovis ammon hodgsoni) and blue sheep (Pseudois nayaur) on the Qinghai-Tibet Plateau

  2025cites this paper
• Millimeter-Scale Leaf Litter Placement Modulates Carbon Dioxide and Methane Emissions in Wetlands

  2025cites this paper
• Pico- and nano-eukaryote community assembly in salinity-gradient lakes: diversity patterns, ecological network and environmental correlates.

  2025cites this paper
• Taxonomic Profile of Cultivable Microbiota from Adult Sheep Follicular Fluid and Its Effects on In Vitro Development of Prepubertal Lamb Oocytes

  2025influential citation
• Gut‐associated bacteria and their roles in wood digestion of saproxylic insects: The case study of flower chafer larvae

  2025cites this paper
• Prophylactic administration of overproducing-abscisic acid Bacillus licheniformis attenuated DSS-induced colitis in mice by regulating the gut microbiota and immune activity

  2025cites this paper
• Differential alteration of rumen microbial composition in response to 3-nitrooxypropanol supplementation in dairy cattle fed high-grain and high-forage diets.

  2025cites this paper
• Unveiling the Characteristics of Microbiota in Different Mucosal Layers of Leopard Coral Grouper (Plectropomus leopardus)

  2025influential citation
• Identification of diet resources of big-eyed bug Geocoris ochropterus (Fieber) (Hemiptera: Geocoridae) by multiplex PCR and shotgun metagenomic approaches

  2025cites this paper
• Exploring individual differences in fear extinction in male and female mice: insights from HPA axis, microbiota, and transcriptomics

  2025cites this paper
• Metagenomic insights into the effects of Chive seed flavonoid on intestinal fermentation, morphology, and microbiota composition in sheep

  2025cites this paper
• Clonal integration and Bacillus subtilis modulate Glechoma longituba performance and soil microbial communities

  2025cites this paper
• Microbial-Mediated Soil Nutrient Enhancement in Moso Bamboo–Liquidambar formosana vs. Phoebe chekiangensis Mixed Plantings

  2025cites this paper
• Borreliosis and doxycycline treatment disrupt gut microbiota and immune responses in nonhuman primates

  2025cites this paper
• Impact of Organic Fertilizer Substitution on Soil Microbial Communities and Cotton Yield in Xinjiang

  2025cites this paper
• The cultivation conditions of leafy vegetables influence the structures of phyllosphere bacterial communities and ultimately impact the L. monocytogenes growth post-harvest

  2025cites this paper
• Legume-based rotation alters soil eukaryotic community and improves soil multifunctionality

  2025influential citation
• Close encounters on a micro scale: microplastic sorption of polycyclic aromatic hydrocarbons and their potential effects on associated biofilm communities

  2025cites this paper
• Interactions between soil and phyllosphere microbiomes modulate flavor formation of Qingxiang Tieguanyin Oolong Tea

  2025influential citation
• Microbial determinants of soil quality in mixed larch and birch forests: network structure and keystone taxa abundances

  2025influential citation
• Increased vegetation disturbance intensity reduces soil nutrients while enhancing microbial network interactions

  2025cites this paper
• Soil microbial legacy mediated by buckwheat flavonoids enhances cabbage resistance to clubroot disease

  2025cites this paper
• The Effect of Probiotics on the Improvement of Body Weight and Fat

  2025cites this paper
• Response of black tea powder and its fermentation products on growth performance, antioxidant capacity, and gut microbiota of Cherax quadricarinatus

  2025cites this paper
• Taste and microorganism characteristics of Pixian Doubanjiang and the correlation between microbial communities and taste formation

  2025cites this paper
• Effects of chlorogenic acid on gut microbiota composition and ovarian function in mice with D-galactose-induced premature ovarian failure

  2025cites this paper
• Bacterial–fungal interkingdom interactions mediate effects of biodiversity on soil carbon dynamics in wheat fields under long-term fertilization

  2025cites this paper
• Synbiotic blend ameliorates high fat high sucrose diet-induced metabolic derangements in Wistar rats.

  2025cites this paper
• Effects of Deoxynivalenol Contamination on Growth Performance, Blood Biochemistry, Histology, Metabolomics, and the Microbiota: A Subacute Dose Oral Toxicity Study in Rats

  2025cites this paper
• Nitrate enrichment exacerbates microbiome and metabolism disturbances of the coral holobiont under heat stress.

  2025cites this paper
• Qing-Re-Hua-Shi Decoction ameliorates DSS-induced colitis by modulating multiple signaling pathways and remodeling the gut microbiota and metabolite profile

  2025cites this paper
• Rumen microbiome associates with postpartum ketosis development in dairy cows: a prospective nested case–control study

  2025influential citation
• Deciphering the coordinated roles of the host genome, duodenal mucosal genes, and microbiota in regulating complex traits in chickens

  2025cites this paper
• Community structure and metabolic potentials of keystone taxa and their associated bacteriophages within rice root endophytic microbiome in response to metal(loid)s contamination.

  2025cites this paper
• The synergistic effects of humic acid, chitosan and Bacillus subtilis on tomato growth and against plant diseases

  2025cites this paper
• The influence of season, habitat and diet on the faecal microbiome of the yellow-footed rock-wallaby (Petrogale xanthopus xanthopus)

  2025cites this paper
• Differences in Gut Microbiota Composition Depending on the Site of Pain in Patients with Chronic Pain

  2025cites this paper
• Alterations in Gut Microbiome Composition and Increased Inflammatory Markers in Post-COVID-19 Individuals

  2025cites this paper
• Could the Microbial Profiling of Normal Pancreatic Tissue from Healthy Organ Donors Contribute to Understanding the Intratumoral Microbiota Signature in Pancreatic Ductal Adenocarcinoma?

  2025cites this paper
• Nitrogen deficiency drives fungal compositional shifts without functional changes in wheat rhizosphere

  2025cites this paper
• Differences in the bacterial communities along the intestinal tract of juvenile channel (Ictalurus punctatus) and hybrid (I. punctatus × I. furcatus) catfish.

  2025cites this paper
• Culturable Human Microorganisms and the Impact of Transportation Conditions on Cultivability

  2025cites this paper
• Assembly and maturation of calf gut microbiome from neonate to post-puberty

  2025cites this paper
• Trophic transfer efficiency of microbial food webs differs in water and sediment in alpine wetlands across the Tibetan Plateau.

  2025cites this paper
• Superior ability of dietary fiber utilization in obese breed pigs linked to gut microbial hydrogenotrophy

  2025cites this paper
• Pterostilbene attenuates intestinal barrier damage and secondary liver oxidative stress in a murine model of Clostridium difficile infection by regulating the gut microbiota.

  2025cites this paper
• Distinct and combined impacts of bacterial cellulose and inulin on obesity and gut microbiota in mice fed a high-fat diet

  2025cites this paper
• Does the host matter? Testing the impact of host identity on the microbiome of a trematode parasite

  2025cites this paper
• Nutrient enrichment alters the microbiome and increases chytrid load in the American bullfrog Lithobates catesbeianus.

  2025cites this paper
• Effects of Soil Physicochemical Properties on Bacterial Community Dynamics in Grassland Ecosystems

  2025cites this paper
• Dysregulated gastric microbial communities and functional shifts in chronic atrophic versus non-atrophic gastritis: a Helicobacter pylori-Negative observational study

  2025influential citation
• Enhanced oral bioavailability of two Cistanche polysaccharides in acteoside: an in-depth analysis of intestinal flora, short-chain fatty acids, and pharmacokinetic regulation

  2025cites this paper
• Malnutrition exacerbates pathogenesis of Lutzomyia longipalpis sand fly-transmitted Leishmania donovani

  2025influential citation
• Gut microbial composition and diversity varies by CREBRF genotype among Samoan infants.

  2025cites this paper
• Alterations in Gut Microbiota After Antibacterial Treatment Due to Concomitant Disease Among Ambulatory Paediatric Patients

  2025cites this paper
• Interactions of nematodes and ammonia-oxidizing bacteria mediate nitrification in two contrasting soils.

  2025cites this paper
• Ca(OH)2 treatment of agroforestry waste as a carbon source for remediation of groundwater nitrate pollution

  2025cites this paper
• Impact of DNA Extraction and 16S rRNA Gene Amplification Strategy on Microbiota Profiling of Faecal Samples

  2025cites this paper
• Substitution of polysorbates by plant-based emulsifiers: impact on vitamin D bioavailability and gut health in mice

  2025cites this paper
• Arbuscular mycorrhizal fungus reshapes the rhizosphere microbiome of alfalfa in response to above‐ground attack by aphids and a fungal plant pathogen

  2025cites this paper
• Soybean β-Conglycinin Inhibits Broiler Growth and Nutrient Utilization by Inducing Allergic and Inflammatory Responses, Impairing Intestinal Barrier Integrity and Altering Cecal Microbiota

  2025influential citation
• The role of gut microbiota at different developmental stages in the adaptation of the Etiella zinckenella to a plant host

  2025cites this paper