The Plastid Genome of the Cryptophyte Alga, Guillardia theta: Complete Sequence and Conserved Synteny Groups Confirm Its Common Ancestry with Red Algae

No abstract is available for this paper.

• Publication year

  1999

• Venue

  Journal of Molecular Evolution

• Publication date

  1999-04-06

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1007/PL00006462PMID 9929392
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Selection on the codon bias of chloroplast and cyanelle genes in different plant and algal lineages

  1998cited by this paper
• Organization of a large gene cluster encoding ribosomal proteins in the cyanobacterium Synechococcus sp. strain PCC 6301: comparison of gene clusters among cyanobacteria, eubacteria and chloroplast genomes.

  1997cited by this paper
• Bonsai genomics: sequencing the smallest eukaryotic genomes.

  1997cited by this paper
• The two RNA polymerases encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids

  1997cited by this paper
• Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division.

  1997cited by this paper
• A DnaB intein in Rhodothermus marinus: indication of recent intein homing across remotely related organisms.

  1997cited by this paper
• Translational Regulation in the Chloroplast

  1997cited by this paper
• The large ribosomal protein gene cluster of a cryptomonad plastid: Gene organization, sequence and evolutionary implications

  1997influential reference
• The recombinant product of the Chryptomonas phi plastid gene hlpA is an architectural HU-like protein that promotes the assembly of complex nucleoprotein structures.

  1997cited by this paper
• Characterization of the orf31‐petG gene cluster from the plastid genome of Populus deltoides

  1997cited by this paper
• The complete sequence of the Cyanophora paradoxa cyanelle genome (Glaucocystophyceae)

  1997cited by this paper
• Origin and Evolution of Chloroplasts: Current Status and Future Perspectives

  1997influential reference
• The 4-kDa nuclear-encoded PetM polypeptide of the chloroplast cytochrome b6f complex. Nucleic acid and protein sequences, targeting signals, transmembrane topology.

  1996cited by this paper
• Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture.

  1996cited by this paper
• Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

  1996cited by this paper
• Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

  1996cited by this paper
• Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement).

  1996cited by this paper
• Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae.

  1996cited by this paper
• Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants.

  1996cited by this paper
• THE PHYLOGENY OF PLASTIDS: A REVIEW BASED ON COMPARISONS OF SMALL‐SUBUNIT RIBOSOMAL RNA CODING REGIONS

  1995cited by this paper
• Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.

  1995cited by this paper
• Chloroplast Origins and Evolution

  1994influential reference
• The Chlamydomonas chloroplast clpP gene contains translated large insertion sequences and is essential for cell growth

  1994cited by this paper
• STRUCTURAL, TRANSCRIPTIONAL, AND PHYLOGENETIC ANALYSES OF THE atpB GENE CLUSTER FROM THE PLASTID OF CRYPTOMONASΨ (CRYPTOPHYCEAE) 1

  1994influential reference
• Complete sequence of Euglena gracilis chloroplast DNA.

  1993cited by this paper
• Identification of protein coding regions by database similarity search

  1993cited by this paper
• The ribosomal RNA repeats are non-identical and directly oriented in the chloroplast genome of the red alga Porphyra purpurea

  1993cited by this paper
• Substitutional bias confounds inference of cyanelle origins from sequence data

  1992cited by this paper
• Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.

  1992influential reference
• The chloroplast genome.

  1992cited by this paper
• The plastid genome of Cryptomonas phi encodes an hsp70-like protein, a histone-like protein, and an acyl carrier protein.

  1991cited by this paper
• Molecular evidence for the origin of plastids from a cyanobacterium-like ancestor

  1991cited by this paper
• Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes

  1991cited by this paper
• NUCLEOTIDE SEQUENCE OF THE GENE FOR THE LARGE SUBUNIT OF RIBULOSE‐1.5‐DISPHOSPHATE CARBOXYLASE/OXYGENASE FROM CRYPTOMNASΦ EVIDENCE SUPPORTING THE POLYPHYLETIC ORGIN OF PLASTIDS 1

  1990cited by this paper
• Guillardia theta gen. et sp.nov. (Cryptophyceae)

  1990cited by this paper
• 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers.

  1988cited by this paper
• The organization and sequence of the genes for ATP synthase subunits in the cyanobacterium Synechococcus 6301. Support for an endosymbiotic origin of chloroplasts.

  1987cited by this paper
• The Chloroplast Endoplasmic Reticulum: Structure, Function, and Evolutionary Significance

  1981cited by this paper
• THE CRYPTOMONAD NUCLEOMORPH: ITS ULTRASTRUCTURE AND EVOLUTIONARY SIGNIFICANCE 1

  1980cited by this paper

• Chloroplast genome sequencing of Poa pratensis and comparative chloroplast genomics analysis with other 29 grass species

  2026cites this paper
• Comparative analysis of plastome structure in Sphagnum species from China

  2025cites this paper
• Molecular phylogeny and comparative chloroplast genome analysis of the type species Crucigenia quadrata

  2025cites this paper
• Cryptic Cryptophytes—Revision of the Genus Goniomonas

  2025cites this paper
• Structure of Photosystem I-FCP from giant kelp uncovers drivers of antenna evolution across the red lineage

  2025cites this paper
• Chloroplast ATP synthase biogenesis requires peripheral stalk subunits AtpF and ATPG and stabilization of atpE mRNA by OPR protein MDE1.

  2023cites this paper
• Chloroplast genome sequences and phylogenetic analysis of eight newly sequenced Caryophyllaceae species.

  2023cites this paper
• Identification and Structural Modeling of the RNA Polymerase Omega Subunits in Chlamydiae and Other Obligate Intracellular Bacteria

  2023cites this paper
• A three-genome ultraconserved element phylogeny of Cryptophytes

  2023cites this paper
• How can Phycobilisome, the unique light harvesting system in certain algae working highly efficiently: The connection in between structures and functions.

  2023cites this paper
• Consequences of light spectra for pigment composition and gene expression in the cryptophyte Rhodomonas salina

  2023cites this paper
• Metagenomic Analysis of Microbial 18s Eukaryotes Communities and Environmental factors in the Western Antarctic Peninsula waters during Austral Summers

  2023cites this paper
• Red Rubiscos and opportunities for engineering green plants

  2022cites this paper
• Comparative Analysis of Bacillariophyceae Chloroplast Genomes Uncovers Extensive Genome Rearrangements Associated with Speciation

  2022cites this paper
• What Happened before Losses of Photosynthesis in Cryptophyte Algae?

  2022cites this paper
• Identification and structural modeling of the chlamydial RNA polymerase omega subunit

  2022cites this paper
• Hemiselmis aquamarina sp. nov. (Cryptomonadales, Cryptophyceae), A Cryptophyte with A Novel Phycobiliprotein Type (Cr-PC 564).

  2021cites this paper
• Chloroplast genome analysis of Chrysotila dentata.

  2021cites this paper
• The phycocyanin-chlorophyll-protein complexes isolated from Chroomonas placoidea

  2021cites this paper
• Complete chloroplast genome features and phylogenetic analysis of Eruca sativa (Brassicaceae)

  2021cites this paper
• Acetohydroxyacid Synthase

  2021cites this paper
• Formate dehydrogenase takes part in molybdenum and iron homeostasis and affects dark-induced senescence in plants

  2020cites this paper
• Light-Harvesting in Cyanobacteria and Eukaryotic Algae: An Overview

  2020cites this paper
• OGDA: a comprehensive organelle genome database for algae

  2020cites this paper
• Plastid-encoded gene comparison reveals usefulness of atpB, psaA, and rbcL for identification and phylogeny of plastid-containing cryptophyte clades

  2020cites this paper
• Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis

  2020cites this paper
• The complete chloroplast genome of Isochrysis galbana and comparison with related haptophyte species

  2020cites this paper
• Comparative Plastid Genomics of Cryptomonas Species Reveals Fine-Scale Genomic Responses to Loss of Photosynthesis

  2020cites this paper
• The landscape of eukaryotic transmembrane beta barrel proteins.

  2020cites this paper
• Phylogenetic study of glycogen synthesizing enzymes in Synechocystis

  2020cites this paper
• Plastid Origins

  2020cites this paper
• Untersuchungen zur Struktur und Spezifität der Phycobiliproteinlyase CPES aus Guillardia theta

  2020cites this paper
• The chloroplast genome of the marine microalga Tisochrysis lutea

  2019cites this paper
• Organellar DNA Polymerases in Complex Plastid-Bearing Algae

  2019cites this paper
• Comparative plastid genomics of Synurophyceae: inverted repeat dynamics and gene content variation

  2019cites this paper
• Ten years of algal biofuel and bioproducts: gains and pains

  2019cites this paper
• Diversification of light capture ability was accompanied by the evolution of phycobiliproteins in cryptophyte algae

  2019cites this paper
• Dinoflagellates with relic endosymbiont nuclei as novel models for elucidating organellogenesis

  2019cites this paper
• geneCo: a visualized comparative genomic method to analyze multiple genome structures

  2019cites this paper
• Type III metacaspases: calcium-dependent activity proposes new function for the p10 domain.

  2018cites this paper
• The dynamic intein landscape of eukaryotes

  2018cites this paper
• Plastid Autonomy vs Nuclear Control Over Plastid Function

  2018cites this paper
• The first plastid genome of a filamentous taxon ‘Bangia’ sp. OUCPT-01 in the Bangiales

  2018cites this paper
• Chapter 2 Plastid Origins

  2018cites this paper
• Comparison of genomic islands in cyanobacteria: Evidence of bacteriophage-mediated horizontal gene transfer from eukaryotes.

  2018cites this paper
• Evolutionary Dynamics of Cryptophyte Plastid Genomes

  2017cites this paper
• A Chlamydomonas reinhardtii nuclear-encoded MinE homologue recognizes the Escherichia coli division site, and the evolutionary implications of MinE gene transfer from chloroplast to nucleus

  2017influential citation
• Cryptomonads: A Model Organism Sheds Light on the Evolutionary History of Genome Reorganization in Secondary Endosymbioses

  2017cites this paper
• Unique Phylogenetic Distributions of the Ska and Dam1 Complexes Support Functional Analogy and Suggest Multiple Parallel Displacements of Ska by Dam1

  2017cites this paper
• 2 . 1 Modern-Day Plastids and Their Genomes

  2017cites this paper
• Evolution of Phycobiliproteins

  2017cites this paper
• Chlorarachniophytes With Complex Secondary Plastids of Green Algal Origin

  2017cites this paper
• Mixotrophy in the marine red-tide cryptophyte Teleaulax amphioxeia and ingestion and grazing impact of cryptophytes on natural populations of bacteria in Korean coastal waters.

  2017cites this paper
• Comparative Genomics of Endosymbiotically-Derived Organelles in Cryptophyte Algae

  2016cites this paper
• Evolution of the Tetrapyrrole Biosynthetic Pathway in Secondary Algae: Conservation, Redundancy and Replacement

  2016cites this paper
• Type II NADH:quinone oxidoreductase family: phylogenetic distribution, structural diversity and evolutionary divergences.

  2016cites this paper
• PBR1 selectively controls biogenesis of photosynthetic complexes by modulating translation of the large chloroplast gene Ycf1 in Arabidopsis

  2016cites this paper
• Comparative genomics of mitochondria in chlorarachniophyte algae: endosymbiotic gene transfer and organellar genome dynamics

  2016cites this paper
• The Diversity and Origins of Mitochondrion-Related Organelles

  2016cites this paper
• Photosynthesis and Light Harvesting in Algae

  2016cites this paper
• Chloroplast and Mitochondrial Genomes of Tomato

  2016cites this paper
• Investigation of the NADH/NAD+ state in Ralstonia eutropha H16 using the fluorescence reporter protein Peredox and Synthesis strategies of RNase A by splicing chemistry of DnaE Inteins

  2016cites this paper
• Progress toward isolation of strains and genetically engineered strains of microalgae for production of biofuel and other value added chemicals: A review

  2016cites this paper
• The complete chloroplast genome of Guillardia theta strain CCMP2712

  2016cites this paper
• A proteome quality index.

  2015cites this paper
• The Plastid Genome of the Cryptomonad Teleaulax amphioxeia

  2015influential citation
• Phylogenomic analysis of Emiliania huxleyi provides evidence for haptophyte-stramenopile association and a chimeric haptophyte nuclear genome.

  2015cites this paper
• An ancestral bacterial division system is widespread in eukaryotic mitochondria

  2015cites this paper
• amoebiformis and Lotharella vacuolata

  2015cites this paper
• Sterol Composition and Biosynthetic Genes of Vitrella brassicaformis, a Recently Discovered Chromerid: Comparison to Chromera velia and Phylogenetic Relationship with Apicomplexan Parasites

  2015cites this paper
• Eukaryotic Components Remodeled Chloroplast Nucleoid Organization during the Green Plant Evolution

  2015cites this paper
• Dual Organellar Targeting of Aminoacyl-tRNA Synthetases in Diatoms and Cryptophytes

  2015cites this paper
• Intein Clustering Suggests Functional Importance in Different Domains of Life

  2015cites this paper
• Prospective function of FtsZ proteins in the secondary plastid of chlorarachniophyte algae

  2015cites this paper
• The Transition from Glycogen to Starch Metabolism in Cyanobacteria and Eukaryotes

  2015cites this paper
• Nucleomorph Genome Sequences of Two Chlorarachniophytes, Amorphochlora amoebiformis and Lotharella vacuolata

  2015cites this paper
• Genomic perspectives on the birth and spread of plastids

  2015cites this paper
• Nucleomorph and plastid genome sequences of the chlorarachniophyte Lotharella oceanica: convergent reductive evolution and frequent recombination in nucleomorph-bearing algae

  2014cites this paper
• Phylogenomic analysis of transcriptomic sequences of mitochondria and chloroplasts of essential brown algae (Phaeophyceae) in China

  2014cites this paper
• Endosymbiosis

  2014cites this paper
• Comparative and Bioinformatics Analyses of the Solanaceae Chloroplast Genomes: Plastome Organization is more or Less Conserved at Family Level -

  2014cites this paper
• Osmotolerance in the Cryptophyceae: jacks-of-all-trades in the Chroomonas Clade.

  2014cites this paper
• Nucleomorph Comparative Genomics

  2014cites this paper
• Chlorophyll modifications and their spectral extension in oxygenic photosynthesis.

  2014cites this paper
• Polyploidy of Endosymbiotically Derived Genomes in Complex Algae

  2014cites this paper
• Serial Gene Losses and Foreign DNA Underlie Size and Sequence Variation in the Plastid Genomes of Diatoms

  2014cites this paper
• Rhinomonas nottbecki n. sp. (Cryptomonadales) and Molecular Phylogeny of the Family Pyrenomonadaceae

  2014cites this paper
• Systems and Trans-System Level Analysis Identi fi es Conserved Iron

  2013cites this paper
• Complete Mitochondrial Genomes of Chimpanzee- and Gibbon-Derived Ascaris Isolated from a Zoological Garden in Southwest China

  2013cites this paper
• Lateral Gene Transfer and the Evolution of Photosynthesis in Eukaryotes

  2013cites this paper
• Lateral Gene Transfer in Evolution

  2013cites this paper
• A novel type of light-harvesting antenna protein of red algal origin in algae with secondary plastids

  2013cites this paper
• Sequestered plastids in Mesodinium rubrum are functionally active up to 80 days of phototrophic growth without cryptomonad prey

  2013cites this paper
• Complete Sequence and Analysis of Plastid Genomes of Two Economically Important Red Algae: Pyropia haitanensis and Pyropia yezoensis

  2013cites this paper
• Chloroplast genome of one brown seaweed, Saccharina japonica (Laminariales, Phaeophyta): its structural features and phylogenetic analyses with other photosynthetic plastids.

  2013cites this paper
• Translation in Mitochondria and Apicoplasts of Apicomplexan Parasites

  2013cites this paper
• Plastid Genomes of Algae

  2012cites this paper
• Plastid Genomes of Parasitic Plants: A Trail of Reductions and Losses

  2012cites this paper
• Chapter 3 Structural Characterization of Photosystem I of the Unicellular Cryptophyte Alga Rhodomonas CS 24

  2012cites this paper
• Endosymbiotic Gene Transfer in the Nucleomorph containing organisms Bigelowiella natans and Guillardia theta

  2012influential citation