Annual community patterns are driven by seasonal switching between closely related marine bacteria

No abstract is available for this paper.

• Publication year

  2017

• Venue

  The ISME Journal

• Publication date

  2017-02-24

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ismej.2017.4PMID 28234350PMCID PMC5437356
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Niche partitioning and biogeography of high light adapted Prochlorococcus across taxonomic ranks in the North Pacific

  2016cited by this paper
• Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

  2016cited by this paper
• Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom

  2016cited by this paper
• Decoupling function and taxonomy in the global ocean microbiome

  2016cited by this paper
• Insensitivity of Diverse and Temporally Variable Particle-Associated Microbial Communities to Bulk Seawater Environmental Parameters

  2016cited by this paper
• Thermally adaptive tradeoffs in closely related marine bacterial strains.

  2015influential reference
• Microbiomes in light of traits: A phylogenetic perspective

  2015cited by this paper
• Structure and function of the global ocean microbiome

  2015cited by this paper
• Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling.

  2015cited by this paper
• Seasonality in molecular and cytometric diversity of marine bacterioplankton: the re-shuffling of bacterial taxa by vertical mixing.

  2015cited by this paper
• Seasonal assemblages and short-lived blooms in coastal north-west Atlantic Ocean bacterioplankton.

  2015cited by this paper
• A network-based approach to disturbance transmission through microbial interactions

  2015cited by this paper
• Response of rare, common and abundant bacterioplankton to anthropogenic perturbations in a Mediterranean coastal site.

  2015cited by this paper
• The hidden seasonality of the rare biosphere in coastal marine bacterioplankton.

  2015influential reference
• Linking activity and function to ecosystem dynamics in a coastal bacterioplankton community

  2014influential reference
• Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

  2014cited by this paper
• Competition–dispersal tradeoff ecologically differentiates recently speciated marine bacterioplankton populations

  2014cited by this paper
• Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

  2014influential reference
• Seasonal dynamics of active SAR11 ecotypes in the oligotrophic Northwest Mediterranean Sea

  2014cited by this paper
• Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences

  2014influential reference
• rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

  2014cited by this paper
• Winners and losers: Ecological and biogeochemical changes in a warming ocean

  2013cited by this paper
• Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

  2013influential reference
• UPARSE: highly accurate OTU sequences from microbial amplicon reads

  2013influential reference
• Patterns and Processes of Microbial Community Assembly

  2013cited by this paper
• Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

  2013cited by this paper
• Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

  2013cited by this paper
• Dramatic Variability of the Carbonate System at a Temperate Coastal Ocean Site (Beaufort, North Carolina, USA) Is Regulated by Physical and Biogeochemical Processes on Multiple Timescales

  2013influential reference
• Global marine bacterial diversity peaks at high latitudes in winter

  2013cited by this paper
• Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

  2013cited by this paper
• Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

  2013influential reference
• Relationship between Abundance and Specific Activity of Bacterioplankton in Open Ocean Surface Waters

  2012influential reference
• A Global Pattern of Thermal Adaptation in Marine Phytoplankton

  2012cited by this paper
• Climate change impacts on marine ecosystems.

  2012cited by this paper
• Marine bacterial, archaeal and protistan association networks reveal ecological linkages

  2011cited by this paper
• The Western English Channel contains a persistent microbial seed bank

  2011cited by this paper
• Defining seasonal marine microbial community dynamics

  2011influential reference
• Examining the global distribution of dominant archaeal populations in soil

  2011cited by this paper
• UCHIME improves sensitivity and speed of chimera detection

  2011cited by this paper
• New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.

  2010influential reference
• Differential bacterial dynamics promote emergent community robustness to lake mixing: an epilimnion to hypolimnion transplant experiment.

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010influential reference
• A latitudinal diversity gradient in planktonic marine bacteria

  2008cited by this paper
• Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton

  2008cited by this paper
• Mfuzz: A software package for soft clustering of microarray data

  2007cited by this paper
• Niche Partitioning Among Prochlorococcus Ecotypes Along Ocean-Scale Environmental Gradients

  2006influential reference
• Annually reoccurring bacterial communities are predictable from ocean conditions

  2006cited by this paper
• Toward a metabolic theory of ecology

  2004cited by this paper
• Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel

  1997cited by this paper
• Canonical correspondence analysis and related multivariate methods in aquatic ecology

  1995cited by this paper

• Validation of a modified Landry-Hassett dilution technique to quantify the growth and mortality rates of subpopulations of planktonic microbes

  2026cites this paper
• Leveraging DNA and RNA oscillatory dynamics to investigate the ecology and physiology of a freshwater microbial community

  2026cites this paper
• Multi-domain temporal patterns reveal stable community membership but dynamic interactions in the coastal microbiome

  2025cites this paper
• Urbanization increases the impact of micropollutants on riverine planktonic food web.

  2025cites this paper
• Correlating the Water Quality Parameters on Algal Diversity through Multivariate Statistical Analysis and Identifying the Bioindicator of Water Pollution in the Freshwater Ecosystems of Dakshina, Karnataka

  2025cites this paper
• Brackish water mixing shapes seasonal dynamics of microbial interactions, community assembly, and stability in the Yangtze River Estuary

  2025cites this paper
• Biotic and Abiotic Factors Shaping the Metacommunity Structure of Free‐Living Bacterioplankton and Nanoflagellates in the Kuroshio Region

  2025cites this paper
• Identifying the drivers of microbial community changes and interactions in polluted coastal sediments

  2025cites this paper
• Environmental gradients shape viral-host dynamics in the Pearl River estuary

  2025cites this paper
• On the growth and form of bacterial colonies

  2025cites this paper
• Rainfall and water temperature co-drive changes in structure and assembly of prokaryotic and eukaryotic communities in a subtropical riverine reservoir

  2025cites this paper
• Microdiversity Shapes the Seasonal Niche of Prokaryotic Plankton Inhabiting Surface Waters in a Coastal Upwelling System

  2025cites this paper
• Quantifying the contribution of the rare biosphere to natural disturbances

  2025cites this paper
• Environmental Heterogeneity Drives Ecological Differentiation in Vibrio Populations Across Subtropical Marine Habitats

  2025cites this paper
• Climate-driven succession in marine microbiome biodiversity and biogeochemical function

  2025cites this paper
• The Piver’s Island Coastal Observatory – a decade of weekly+ observations reveal the press and pulse of a changing temperate coastal marine system

  2025cites this paper
• Monthly Variation, Environmental Drivers, and Ecological Functions of Marine Bacterial Community in a Eutrophic Coastal Area of China

  2025cites this paper
• The mytilin gene cluster: shedding light on the enigmatic origin of mussel dispensable genes.

  2025cites this paper
• Characteristics and environmental driving mechanisms of bacterial communities in the Bohai Sea.

  2025cites this paper
• Characterisation of coastal reef fish assemblages across an estuarine-urbanisation gradient using underwater visual census and environmental DNA metabarcoding

  2025cites this paper
• Co-occurrence patterns between Chlorophyta and nucleocytoplasmic large DNA virus in coastal ecosystem, South Korea.

  2025cites this paper
• Seasonal patterns of DOM molecules are linked to microbial functions in the oligotrophic ocean

  2025cites this paper
• Emergent predictability in microbial ecosystems

  2024cites this paper
• Time-decay patterns and irregular disturbance: contrasting roles of abundant and rare microbial communities in dynamic coastal seawater

  2024cites this paper
• Effects of temperature and size class on the gut digesta microbiota of the sea urchin Tripneustes ventricosus

  2024cites this paper
• DNA metabarcoding reveals distinct bacterial and phytoplankton assemblages in the Agulhas Current and the adjacent coastal shelf

  2024cites this paper
• Revealing the intricate temporal dynamics and adaptive responses of prokaryotic and eukaryotic microbes in the coastal South China Sea.

  2024cites this paper
• Climate-driven succession in marine microbiome biodiversity and biogeochemical function

  2024cites this paper
• Seasonal dynamics of free-living (FL) and particle-attached (PA) bacterial communities in a plateau reservoir

  2024cites this paper
• Phaeocystis globosa and diatom blooms promote distinct bacterial communities and associations in a coastal ecosystem

  2024cites this paper
• Seasonal recurrence and modular assembly of an Arctic pelagic marine microbiome

  2024cites this paper
• Extremophile hypolithic communities in the Vestfold Hills, East Antarctica

  2024cites this paper
• Spatiotemporal dynamics of bacterioplankton communities in the estuaries of two differently contaminated coastal areas: Composition, driving factors and ecological process.

  2024cites this paper
• Influence of Season on Biodegradation Rates in Rivers

  2024cites this paper
• Taxonomic and functional dynamics of nirS denitrifiers along a salinity gradient in the Pearl River Estuary

  2024cites this paper
• Differences in diversity and community composition of the shell microbiome of apparently healthy lobsters Homarus americanus across Atlantic Canada

  2024cites this paper
• Interactions shape aquatic microbiome responses to Cu and Au nanoparticle treatments in wetland manipulation experiments.

  2024cites this paper
• Biogeochemical and microbial community structure differently modulates CO2 and CH4 dynamics in two adjacent volcanic lakes (Monticchio, Italy)

  2024cites this paper
• Host Species and Environment Shape the Gut Microbiota of Cohabiting Marine Bivalves

  2023cites this paper
• Persistence of location-specific microbial signatures on boats during voyages.

  2023cites this paper
• Strong cascading impacts of micropollutants on planktonic food web in urban river

  2023cites this paper
• Host-microbiota-parasite interactions in two wild sparid fish species, Diplodus annularis and Oblada melanura (Teleostei, Sparidae) over a year: a pilot study

  2023cites this paper
• Stochasticity-driven weekly fluctuations distinguished the temporal pattern of particle-associated microorganisms from its free-living counterparts in temperate coastal seawater.

  2023cites this paper
• Defining marine bacterioplankton community assembly rules by contrasting the importance of environmental determinants and biotic interactions.

  2023cites this paper
• Vibrio parahaemolyticus and Vibrio vulnificus in vitro colonization on plastics influenced by temperature and strain variability

  2023cites this paper
• Bacterial and archaeal community distributions and cosmopolitanism across physicochemically diverse hot springs

  2023influential citation
• A Gulf Stream frontal eddy harbors a distinct microbiome compared to adjacent waters

  2023cites this paper
• In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model

  2023cites this paper
• Deep relationships between bacterial community and polycyclic aromatic hydrocarbons in soil profiles near typical coking plants

  2023cites this paper
• Bacterial community (free-living vs particle-attached) assembly driven by environmental factors and a more stable network in the pre-bloom period than post-bloom

  2023cites this paper
• Bacterial taxonomic and functional profiles from Bohai Sea to northern Yellow Sea

  2023cites this paper
• Community Dynamics of Free-Living and Particle-Attached Bacteria over Sequential Blooms of Heterotrophic Dinoflagellate Noctiluca scintillans and Mixotrophic Ciliate Mesodinium rubrum

  2022cites this paper
• Microbiome Development of Seawater-Incubated Pre-production Plastic Pellets Reveals Distinct and Predictive Community Compositions

  2022cites this paper
• Switch of Bacteria Community Under Oxygen Depletion in Sediment of Bohai Sea

  2022cites this paper
• Determinism governs the succession of disturbed bacterioplankton communities in a coastal maricultural ecosystem.

  2022cites this paper
• Photoperiod-driven rhythms reveal multi-decadal stability of phytoplankton communities in a highly fluctuating coastal environment

  2022cites this paper
• Homogeneous selection is not always important in bacterial community in the eutrophic enclosed bay

  2022cites this paper
• Spatiotemporal Variation of Microbial Communities in the Ultra-Oligotrophic Eastern Mediterranean Sea

  2022cites this paper
• Prospects and constraints in studying the biodiversity of agriculturally important microalgae and cyanobacteria and useful statistical tools

  2022cites this paper
• Salinity as a Determinant Structuring Microbial Communities in Coastal Lakes

  2022cites this paper
• Microbial Diversity in a North Western Mediterranean Sea Shallow Coastal Lagoon Under Contrasting Water Temperature Conditions

  2022cites this paper
• Patchy Blooms and Multifarious Ecotypes of Labyrinthulomycetes Protists and Their Implication in Vertical Carbon Export in the Pelagic Eastern Indian Ocean

  2022cites this paper
• Influence of nutrient supply on plankton microbiome biodiversity and distribution in a coastal upwelling region

  2022cites this paper
• Niche Partitioning of Labyrinthulomycete Protists Across Sharp Coastal Gradients and Their Putative Relationships With Bacteria and Fungi

  2022cites this paper
• Coastal Microbial Communities Disrupted During the 2018 Hurricane Season in Outer Banks, North Carolina

  2022cites this paper
• Primary microbial succession in the anchialine ecosystem.

  2022cites this paper
• Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables.

  2022cites this paper
• Guts of the Urban Ecosystem: Microbial Ecology of Sewer Infrastructure

  2022cites this paper
• Warmer temperatures favor slower-growing bacteria in natural marine communities

  2022cites this paper
• Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community

  2022cites this paper
• Estuarine microbial networks and relationships vary between environmentally distinct communities

  2022cites this paper
• Temporal variation in the prokaryotic community of a nearshore marine environment

  2022cites this paper
• Seasonal controls on nearshore dissolved oxygen variability and hypoxia in a coastal embayment

  2022cites this paper
• Bifidobacterium animalis subsp. lactis MN-Gup protects mice against gut microbiota-related obesity and endotoxemia induced by a high fat diet

  2022cites this paper
• Plastic-microbe interaction in the marine environment: Research methods and opportunities.

  2022cites this paper
• Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure

  2022cites this paper
• The diversity and function of the in-situ fungal communities in response to polycyclic aromatic hydrocarbons in the urban wetland

  2022cites this paper
• Patchy Distributions and Distinct Niche Partitioning of Mycoplankton Populations across a Nearshore to Open Ocean Gradient

  2021cites this paper
• Seasonal Succession and Coherence Among Bacteria and Microeukaryotes in Lake Baikal

  2021cites this paper
• European eel (Anguilla anguilla) GI tract conserves a unique metagenomics profile in the recirculation aquaculture system (RAS)

  2021cites this paper
• Unraveling the predictive role of temperature in the gut microbiota of the sea urchin Echinometra sp. EZ across spatial and temporal gradients

  2021cites this paper
• Particle-associated and free-living bacterial communities in an oligotrophic sea are affected by different environmental factors.

  2021cites this paper
• Influence of polycyclic aromatic hydrocarbon pollution on the diversity and function of bacterial communities in urban wetlands

  2021cites this paper
• Groundwater bacterial communities evolve over time in response to recharge.

  2021cites this paper
• Stabilising role of seed banks and the maintenance of bacterial diversity.

  2021cites this paper
• Survival of the fittest: Prokaryotic communities within a SWRO desalination plant

  2021cites this paper
• Trait-trait relationships and tradeoffs vary with genome size in prokaryotes

  2021cites this paper
• Estuarine gradients dictate spatiotemporal variations of microbiome networks in the Chesapeake Bay

  2021cites this paper
• Metagenomic analysis provides functional insights into seasonal change of a non-cyanobacterial prokaryotic community in temperate coastal waters

  2021influential citation
• Bacterial Community Structure and Diversity in the Aqueous Environment of Shihou Lake and its Relationship with Environmental Factors

  2021cites this paper
• Trends in mercury concentrations and methylation in Minamata Bay, Japan, between 2014 and 2018.

  2021cites this paper
• Janthinobacter additions reduce rotifer grazing of microalga Microchloropsis salina in biotically complex communities

  2021cites this paper
• The Polar Night Shift: Annual Dynamics and Drivers of Microbial Community Structure in the Arctic Ocean

  2021cites this paper
• Seasonal marine microorganisms change neighbors under contrasting environmental conditions.

  2021cites this paper
• Groundwater bacterial communities evolve over time, exhibiting oscillating similarity patterns in response to recharge

  2021cites this paper
• Inter- and Intra-Annual Bacterioplankton Community Patterns in a Deepwater Sub-Arctic Region: Persistent High Background Abundance of Putative Oil Degraders

  2021cites this paper
• Cryopreservation and Resuscitation of Natural Aquatic Prokaryotic Communities

  2021cites this paper
• Higher temperatures generically favour slower-growing bacterial species in multispecies communities

  2020cites this paper
• Stochasticity versus determinism: Microbial community assembly patterns under specific conditions in petrochemical activated sludge.

  2020cites this paper
• Spatiotemporal Dynamics of Vibrio Communities and Abundance in Dongshan Bay, South of China

  2020cites this paper