Recombinant inbred lines (RILs) are an important resource for mapping genes controlling complex traits in many species. While RIL populations have been developed for maize, a maize RIL population with multiple teosinte inbred lines as parents has been lacking. Here, we report a teosinte nested association mapping (TeoNAM) population, derived from crossing five teosinte inbreds to the maize inbred line W22. The resulting 1257 BC1S4 RILs were genotyped with 51,544 SNPs, providing a high-density genetic map with a length of 1540 cM. On average, each RIL is 15% homozygous teosinte and 8% heterozygous. We performed joint linkage mapping (JLM) and a genome-wide association study (GWAS) for 22 domestication and agronomic traits. A total of 255 QTL from JLM were identified, with many of these mapping near known genes or novel candidate genes. TeoNAM is a useful resource for QTL mapping for the discovery of novel allelic variation from teosinte. TeoNAM provides the first report that PROSTRATE GROWTH1, a rice domestication gene, is also a QTL associated with tillering in teosinte and maize. We detected multiple QTL for flowering time and other traits for which the teosinte allele contributes to a more maize-like phenotype. Such QTL could be valuable in maize improvement.
TeoNAM: A Nested Association Mapping Population for Domestication and Agronomic Trait Analysis in Maize
Qiuyue Chen,Chin Jian Yang,Alessandra M. York,Wei Xue,Lora L Daskalska,Craig DeValk,Kyle W Krueger,S. Lawton,Bailey G Spiegelberg,Jack M. Schnell,Michael A Neumeyer,Joseph S Perry,A. Peterson,Brandon Kim,Laura Bergstrom,Liyan Yang,Isaac C Barber,Feng Tian,J. Doebley
Published 2019 in Genetics
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- Publication year
2019
- Venue
Genetics
- Publication date
2019-05-24
- Fields of study
Agricultural and Food Sciences, Medicine, Biology
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