Visualizing the Path of DNA through Proteins Using DREEM Imaging.

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Molecules and Cells

• Publication date

  2016-01-21

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/j.molcel.2015.12.012PMID 26774284PMCID PMC5242388
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• TRF2-Mediated Control of Telomere DNA Topology as a Mechanism for Chromosome-End Protection.

  2016cited by this paper
• Eukaryotic Mismatch Repair in Relation to DNA Replication.

  2015cited by this paper
• The palindromic DNA-bound USP/EcR nuclear receptor adopts an asymmetric organization with allosteric domain positioning

  2014cited by this paper
• CryoEM and image sorting for flexible protein/DNA complexes.

  2014influential reference
• Structure of the large ribosomal subunit from human mitochondria

  2014cited by this paper
• The dynamic duo: Combining NMR and small angle scattering in structural biology

  2014cited by this paper
• Quantitative electrostatic force microscopy with sharp silicon tips

  2014cited by this paper
• Nanoscale nucleosome dynamics assessed with time-lapse AFM

  2014cited by this paper
• Solution-state conformation and stoichiometry of yeast Sir3 heterochromatin fibers

  2014cited by this paper
• The Cryo-EM structure of the palindromic DNA-bound USP-EcR nuclear receptor reveals an asymmetric organization with allosteric domain positioning

  2014cited by this paper
• Structural insights into NHEJ: building up an integrated picture of the dynamic DSB repair super complex, one component and interaction at a time.

  2014cited by this paper
• Many Ways to Loop DNA

  2013cited by this paper
• Molecular Architecture of a Eukaryotic Translational Initiation Complex

  2013cited by this paper
• Combined optical and topographic imaging reveals different arrangements of human RAD54 with presynaptic and postsynaptic RAD51–DNA filaments

  2013cited by this paper
• Comprehensive macromolecular conformations mapped by quantitative SAXS analyses

  2013cited by this paper
• Structural visualization of key steps in human transcription initiation

  2013cited by this paper
• Subsurface imaging of carbon nanotube networks in polymers with DC-biased multifrequency dynamic atomic force microscopy

  2013influential reference
• Supplementary Materials and Methods

  2013cited by this paper
• DNA conformations in mismatch repair probed in solution by X-ray scattering from gold nanocrystals

  2013cited by this paper
• Biochemical Analysis of the Human Mismatch Repair Proteins hMutSα MSH2G674A-MSH6 and MSH2-MSH6T1219D*

  2012cited by this paper
• New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

  2012influential reference
• Stoichiometry of MutS and MutL at unrepaired mismatches in vivo suggests a mechanism of repair

  2012influential reference
• ATP alters the diffusion mechanics of MutS on mismatched DNA.

  2012cited by this paper
• Damaged DNA induced UV-damaged DNA-binding protein (UV-DDB) dimerization and its roles in chromatinized DNA repair

  2012cited by this paper
• Computational reconstruction of multidomain proteins using atomic force microscopy data.

  2012cited by this paper
• Quantifying the dielectric constant of thick insulators by electrostatic force microscopy: effects of the microscopic parts of the probe

  2012cited by this paper
• Large conformational changes in MutS during DNA scanning, mismatch recognition and repair signalling

  2012cited by this paper
• Visualization of eukaryotic DNA mismatch repair reveals distinct recognition and repair intermediates.

  2011cited by this paper
• Kelvin probe force microscopy and its application

  2011influential reference
• Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair

  2011cited by this paper
• Recent Trends in Surface Characterization and Chemistry with High‐Resolution Scanning Force Methods

  2011cited by this paper
• Improved Kelvin probe force microscopy for imaging individual DNA molecules on insulating surfaces

  2010influential reference
• Stochastic and reversible assembly of a multiprotein DNA repair complex ensures accurate target site recognition and efficient repair

  2010cited by this paper
• Single-molecule FRET TACKLE reveals highly dynamic mismatched DNA-MutS complexes.

  2010cited by this paper
• Methods for three-dimensional reconstruction of heterogeneous assemblies.

  2010cited by this paper
• Tunneling electroresistance effect in ferroelectric tunnel junctions at the nanoscale.

  2009cited by this paper
• Imaging surface charges of individual biomolecules.

  2009cited by this paper
• Electrostatic force microscopy: imaging DNA and protein polarizations one by one

  2009influential reference
• Electrostatic force spectroscopy on insulating surfaces: the effect of capacitive interaction

  2009cited by this paper
• Improving lateral resolution of electrostatic force microscopy by multifrequency method under ambient conditions

  2009cited by this paper
• Spring constant of microcantilevers in fundamental and higher eigenmodes

  2008cited by this paper
• Bimodal atomic force microscopy imaging of isolated antibodies in air and liquids

  2008cited by this paper
• Scanning electron microscopy of chromosomes.

  2008cited by this paper
• Mechanism of MutS Searching for DNA Mismatches and Signaling Repair*

  2008cited by this paper
• Structure of the human MutSalpha DNA lesion recognition complex.

  2007cited by this paper
• Compensating electrostatic forces by single-scan Kelvin probe force microscopy

  2007cited by this paper
• Using atomic force microscopy to study chromatin structure and nucleosome remodeling.

  2007influential reference
• Multifrequency electrostatic force microscopy in the repulsive regime

  2007cited by this paper
• Escherichia coli MutS Tetramerization Domain Structure Reveals That Stable Dimers but Not Tetramers Are Essential for DNA Mismatch Repair in Vivo*

  2007cited by this paper
• Measuring phase shifts and energy dissipation with amplitude modulation atomic force microscopy

  2006cited by this paper
• Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis.

  2005cited by this paper
• Study of the noise of micromechanical oscillators under quality factor enhancement via driving force control

  2005influential reference
• DNA mismatch repair.

  2005cited by this paper
• Quantitative analysis of electric force microscopy: The role of sample geometry

  2005cited by this paper
• Ferroelectric properties of epitaxial BaTiO3 thin films and heterostructures on different substrates

  2005cited by this paper
• Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

  2005cited by this paper
• Compositional mapping of surfaces in atomic force microscopy by excitation of the second normal mode of the microcantilever

  2004cited by this paper
• Quantitative electrostatic force microscopy-phase measurements

  2004cited by this paper
• Enhancement of Ferroelectricity in Strained BaTiO3 Thin Films

  2004cited by this paper
• Amplitude or frequency modulation-detection in Kelvin probe force microscopy

  2003influential reference
• Quantitative characterization of biomolecular assemblies and interactions using atomic force microscopy.

  2003influential reference
• The molecular machines of DNA repair: scanning force microscopy analysis of their architecture

  2003cited by this paper
• Chromatin fibers, one-at-a-time.

  2003cited by this paper
• Fluid electric force microscopy for charge density mapping in biological systems

  2003cited by this paper
• DNA bending and unbending by MutS govern mismatch recognition and specificity

  2003cited by this paper
• Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials.

  2003influential reference
• Electrostatic force gradient signal: resolution enhancement in electrostatic force microscopy and improved Kelvin probe microscopy

  2003cited by this paper
• Dynamic atomic force microscopy methods

  2002cited by this paper
• Glutaraldehyde modified mica: a new surface for atomic force microscopy of chromatin.

  2002cited by this paper
• Local Polarization, Charge Compensation, and Chemical Interactions on Ferroelectric Surfaces: a Route Toward New Nanostructures

  2001cited by this paper
• Resolution enhancement and improved data interpretation in electrostatic force microscopy

  2001cited by this paper
• A novel single-molecule study to determine protein--protein association constants.

  2001cited by this paper
• Atomic force microscopy of DNA and protein-DNA complexes using functionalized mica substrates.

  2001cited by this paper
• Interaction of Escherichia coli MutS and MutL at a DNA Mismatch*

  2001cited by this paper
• The crystal structure of DNA mismatch repair protein MutS binding to a G·T mismatch

  2000influential reference
• Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA

  2000influential reference
• The noise of cantilevers

  2000cited by this paper
• hMSH2-hMSH6 forms a hydrolysis-independent sliding clamp on mismatched DNA.

  1999cited by this paper
• Assembly of defined nucleosomal and chromatin arrays from pure components.

  1999cited by this paper
• Measurement of hardness, surface potential, and charge distribution with dynamic contact mode electrostatic force microscope

  1999cited by this paper
• Tapping-mode atomic force microscopy and phase-imaging in higher eigenmodes

  1999cited by this paper
• Energy dissipation in tapping-mode atomic force microscopy

  1998influential reference
• Detection and control of ferroelectric domains by an electrostatic force microscope

  1998cited by this paper
• Enhanced sensitivity to force gradients by using higher flexural modes of the atomic force microscope cantilever

  1998cited by this paper
• New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.

  1998cited by this paper
• Crystal structure of the nucleosome core particle at 2.8 Å resolution

  1997influential reference
• MutS mediates heteroduplex loop formation by a translocation mechanism

  1997cited by this paper
• Visualization and analysis of chromatin by scanning force microscopy.

  1997cited by this paper
• Vacuum compatible high‐sensitive Kelvin probe force microscopy

  1996cited by this paper
• Visualization and analysis of unfolded nucleosomes associated with transcribing chromatin.

  1996cited by this paper
• Atomic Resolution of the Silicon (111)-(7x7) Surface by Atomic Force Microscopy

  1995cited by this paper
• Linker DNA accessibility in chromatin fibers of different conformations: a reevaluation.

  1994cited by this paper
• Biochemical and structural applications of scanning force microscopy

  1994cited by this paper
• Role of linker histones in extended chromatin fibre structure

  1994cited by this paper
• DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity.

  1994cited by this paper
• Single-Crystal Epitaxial Thin Films of the Isotropic Metallic Oxides Sr1-xCaxRuO3 (0 le x le 1).

  1992cited by this paper
• Frequency modulation detection using high‐Q cantilevers for enhanced force microscope sensitivity

  1991influential reference
• Isolation and characterization of the Escherichia coli mutL gene product.

  1989cited by this paper
• Atomic force microscope–force mapping and profiling on a sub 100‐Å scale

  1987influential reference
• Electron microscope visualization of chromatin and other DNA-protein complexes.

  1978cited by this paper

• Multiplexed stamp-transfer AFM deposition improves resolution of protein-DNA conformational states.

  2025cites this paper
• Revolutionizing biointerface analysis: nanoscale electrical insights from Kelvin probe force microscopy and their impact on biological science and industry.

  2025cites this paper
• Kelvin Probe Force Microscopy in Bionanotechnology: Current Advances and Future Perspectives.

  2025cites this paper
• Studying Structure and Functions of Nucleosomes with Atomic Force Microscopy

  2024influential citation
• Studying the structure and function of nucleosomes by atomic force microscopy

  2024cites this paper
• Single-molecule imaging of genome maintenance proteins encountering specific DNA sequences and structures.

  2023cites this paper
• Dynamic human MutSα–MutLα complexes compact mismatched DNA

  2020cites this paper
• Lab on a Tip: Applications of Functional Atomic Force Microscopy for the Study of Electrical Properties in Biology.

  2019cites this paper
• Optimizing Different Conditions to Develop a Single Stranded Phage-Lambda DNA (λDNA) Tightrope

  2019cites this paper
• Deposited in DRO : 28 September 2018 Version of attached

  2018cites this paper
• Analysis of single, cisplatin‐induced DNA bends by atomic force microscopy and simulations

  2018cites this paper
• A model for the evolution of prokaryotic DNA restriction-modification systems based upon the structural malleability of Type I restriction-modification enzymes

  2018cites this paper
• Single-molecule DREEM imaging reveals DNA wrapping around human mitochondrial single-stranded DNA binding protein

  2018cites this paper
• Analysis of DNA-Protein Complexes by Atomic Force Microscopy Imaging: The Case of TRF2-Telomeric DNA Wrapping.

  2018cites this paper
• Studying protein-DNA interactions using atomic force microscopy.

  2018cites this paper
• Single-Molecule Analysis of Bacterial DNA Repair and Mutagenesis.

  2017cites this paper
• Nucleosome-like, Single-stranded DNA (ssDNA)-Histone Octamer Complexes and the Implication for DNA Double Strand Break Repair*

  2017cites this paper
• Using Atomic Force Microscopy to Characterize the Conformational Properties of Proteins and Protein-DNA Complexes That Carry Out DNA Repair.

  2017influential citation
• Of Rings and Rods: Regulating Cohesin Entrapment of DNA to Generate Intra- and Intermolecular Tethers

  2016cites this paper
• Visualizing DNA in nucleosomes and mismatch repair complexes via their electrostatics

  2016cites this paper
• The Tail That Wags the Dog: How the Disordered C-Terminal Domain Controls the Transcriptional Activities of the p53 Tumor-Suppressor Protein.

  2016influential citation
• Enhanced electrostatic force microscopy reveals higher-order DNA looping mediated by the telomeric protein TRF2

  2016cites this paper
• TRF2-Mediated Control of Telomere DNA Topology as a Mechanism for Chromosome-End Protection.

  2016cites this paper