Differential oligosaccharide recognition by evolutionarily-related beta-1,4 and beta-1,3 glucan-binding modules.

No abstract is available for this paper.

• Publication year

  2002

• Venue

  Journal of Molecular Biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine, Materials Science, Chemistry

• Identifiers
  PMID 12079353
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1994cited by this paper
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  1994cited by this paper
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  1992cited by this paper
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  1987cited by this paper
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  1981cited by this paper
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  1977cited by this paper
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  1968cited by this paper

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