Dynamics of a Pig Slurry Microbial Community during Anaerobic Storage and Management

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Applied and Environmental Microbiology

• Publication date

  2006-05-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/AEM.72.5.3578-3585.2006PMID 16672505PMCID PMC1472392
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity.

  2006cited by this paper
• Characterisation of the microbial diversity in a pig manure storage pit using small subunit rDNA sequence analysis.

  2005cited by this paper
• 16S rDNA characterisation of bacterial and archaeal communities during start-up of anaerobic thermophilic digestion of cattle manure.

  2004cited by this paper
• Microbiological status of piggery effluent from 13 piggeries in the south east Queensland region of Australia

  2004cited by this paper
• Application of group specific amplified rDNA restriction analysis to characterize swine fecal and manure storage pit samples.

  2004cited by this paper
• ARB: a software environment for sequence data.

  2004cited by this paper
• A new real time PCR (TaqMan PCR) system for detection of the16S rDNA gene associated with fecal bacteria.

  2004cited by this paper
• Volatile fatty acids analysis from pig slurry using high-performance liquid chromatography

  2004cited by this paper
• Analysis of the Sulfate-Reducing Bacterial and Methanogenic Archaeal Populations in Contrasting Antarctic Sediments

  2003cited by this paper
• Removal of PCR inhibitors from soil DNA by chemical flocculation.

  2003cited by this paper
• Isolation, characterization and comparison of bacteria from swine faeces and manure storage pits.

  2003cited by this paper
• Bacterial Community Dynamics during Production of Registered Designation of Origin Salers Cheese as Evaluated by 16S rRNA Gene Single-Strand Conformation Polymorphism Analysis

  2003cited by this paper
• Influence of Treatment Techniques for Pig Slurry on Methane Emissions during Subsequent Storage

  2003cited by this paper
• Culture-Independent Analysis of Gut Bacteria: the Pig Gastrointestinal Tract Microbiota Revisited

  2002cited by this paper
• Molecular Biological Detection and Characterization of Clostridium Populations in Municipal Landfill Sites

  2002cited by this paper
• Detection of Lactobacillus, Pediococcus, Leuconostoc, and Weissella Species in Human Feces by Using Group-Specific PCR Primers and Denaturing Gradient Gel Electrophoresis

  2001cited by this paper
• The effect of summer and winter seasons on the survival of Salmonella typhimurium and indicator micro‐organisms during the storage of solid fraction of pig slurry

  2001cited by this paper
• Characterisation and Comparison of Microbial Populations in Swine Faeces and Manure Storage Pits by 16S rDNA Gene Sequence Analyses

  2001influential reference
• Effect of Primers Hybridizing to Different Evolutionarily Conserved Regions of the Small-Subunit rRNA Gene in PCR-Based Microbial Community Analyses and Genetic Profiling

  2001cited by this paper
• Bacterial community dynamics in liquid swine manure during storage: molecular analysis using DGGE/PCR of 16S rDNA

  2001cited by this paper
• Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem.

  2001cited by this paper
• Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis.

  2000cited by this paper
• A review of microbiology in swine manure odor control

  2000cited by this paper
• Succession of Microbial Communities during Hot Composting as Detected by PCR–Single-Strand-Conformation Polymorphism-Based Genetic Profiles of Small-Subunit rRNA Genes

  2000cited by this paper
• Monitoring of activity dynamics of an anaerobic digester bacterial community using 16S rRNA polymerase chain reaction--single-strand conformation polymorphism analysis.

  2000cited by this paper
• Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea.

  2000cited by this paper
• Déjections porcines et problèmes environnementaux en Europe

  2000cited by this paper
• Fate of bacterial pathogens in cattle dung slurry subjected to anaerobic digestion

  1999cited by this paper
• Correlating Microbes to Major Odorous Compounds in Swine Manure

  1999cited by this paper
• Molecular Analysis of the Microbial Diversity Present in the Colonic Wall, Colonic Lumen, and Cecal Lumen of a Pig

  1999cited by this paper
• Phylogenetic diversity of methanogenic archaea in swine waste storage pits.

  1999cited by this paper
• A New Approach To Utilize PCR–Single-Strand-Conformation Polymorphism for 16S rRNA Gene-Based Microbial Community Analysis

  1998cited by this paper
• Manure management. Treatment strategies for sustainable agriculture

  1998cited by this paper
• Estimation of the Relative Abundance of DifferentBacteroides and Prevotella Ribotypes in Gut Samples by Restriction Enzyme Profiling of PCR-Amplified 16S rRNA Gene Sequences

  1998cited by this paper
• Novel techniques for analysing microbial diversity in natural and perturbed environments.

  1998cited by this paper
• Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis

  1997cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• Anaerobic Decomposition of Swine Manure and Ammonia Generation in a Deep Pit

  1996cited by this paper
• The Ribosomal Database Project (RDP)

  1996cited by this paper
• Nonradioactive method to study genetic profiles of natural bacterial communities by PCR-single-strand-conformation polymorphism

  1996cited by this paper
• Control of Gaseous Emissions from Livestock Buildings and Manure Stores

  1994cited by this paper
• 16S ribosomal DNA amplification for phylogenetic study

  1991cited by this paper
• Studies on the reduction of pathogenic and indicator bacteria in liquid pig manure treated by sedimentation and anaerobic filter digestion for methane generation

  1988influential reference
• Experimental studies on the survival of pathogenic and indicator bacteria in aerated and non-aerated cattle and pig slurry

  1987influential reference
• Characterization of Bacteria from a Swine Manure Digester

  1982cited by this paper
• Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

  1981cited by this paper
• Enumeration and isolation of anaerobic microbiota of piggery wastes

  1978cited by this paper
• The bacterial population of piggery-waste anaerobic digesters

  1974cited by this paper

• Hydrothermal pretreatment with and without catalysts to improve anaerobic digestion of pig manure

  2025cites this paper
• Effects of swine manure dilution with lagoon effluent on microbial communities and odor formation in pit recharge systems.

  2024cites this paper
• Data based slurry treatment decision tree to minimise antibiotic resistance and pathogen transfer while maximising nutrient recycling

  2022influential citation
• Evaluation of the Effect of the Application of Combined Pretreatments and Inoculum with High Alkalinity on Food Residues Through BMP Tests

  2022cites this paper
• Metagenomic and HT-qPCR analysis reveal the microbiome and resistome in pig slurry under storage, composting, and anaerobic digestion.

  2022cites this paper
• Role of Microbial Communities in the Low-Cost, Sustainable Treatment of Pig Effluent Waste

  2021cites this paper
• Characterization of microbial community dynamics during the anaerobic co-digestion of thermally pre-treated slaughterhouse wastes with glycerin addition

  2019cites this paper
• Pyrosequencing-based analysis of the complex microbiota located in the gastrointestinal tracts of growing-finishing pigs

  2019cites this paper
• Pig slurry improves the anaerobic digestion of waste cooking oil

  2019cites this paper
• Enhanced anaerobic treatment of swine wastewater with exogenous granular sludge: Performance and mechanism.

  2019cites this paper
• Methodology for the design and economic assessment of anaerobic digestion plants to produce energy and biofertilizer from livestock waste.

  2019cites this paper
• Study of Bacterial Diversity by PCR-DGGE Technique and Screening of Bacteriocin-Producing Lactic Acid Bacteria in Feces of Pig Cultured by Traditional Method in Southern Thailand Article Information

  2019cites this paper
• Fate of Mycobacterium avium subsp. paratuberculosis and changes in bacterial diversity populations in dairy slurry after chemical treatments

  2019cites this paper
• Microbial diversity dynamics during the self-acidification of dairy slurry

  2019cites this paper
• Temporal Dynamics of Bacterial Communities in Soil and Leachate Water After Swine Manure Application

  2018cites this paper
• Comparison of microbial communities in swine manure at various temperatures and storage times

  2018influential citation
• Effect of Bacillus spp. direct-fed microbial on slurry characteristics and gaseous emissions in growing pigs fed with high fibre-based diets.

  2017cites this paper
• Study of Bacterial Diversity by PCR-DGGE Technique and Screening of Bacterio-cin-Producing Lactic Acid Bacteria in Feces of Pig Cultured by Traditional Method in Southern Thailand

  2017cites this paper
• Using bio-manipulation to optimise nutrient management within intensive farm systems

  2017cites this paper
• Temperature regulates deterministic processes and the succession of microbial interactions in anaerobic digestion process.

  2017cites this paper
• Metadata of the article that will be visualized in OnlineFirst

  2016cites this paper
• Seasonal Variation on Microbial Community and Methane Production during Anaerobic Digestion of Cattle Manure in Brazil

  2016cites this paper
• Mitigating greenhouse gases emission from cattle slurry: An apporach for small-medium scale farms

  2016cites this paper
• Effects of Dairy Manure Management Practices on E. coli Concentration and Diversity

  2016cites this paper
• Biomethanation Potential of Wetland Biomass in Codigestion with Pig Slurry

  2016cites this paper
• Effect of Storage Period on the Changes of Odorous Compound Concentrations and Bacterial Ecology for Identifying the Cause of Odor Production from Pig Slurry

  2016cites this paper
• Biotic and abiotic roles of leachate recirculation in batch mode solid-state anaerobic digestion of cattle manure.

  2016cites this paper
• Eficiencia de cepas bacterianas aisladas del manglar para biorremediar suelos contaminados con petróleo

  2016cites this paper
• Prokaryote community dynamics in anaerobic co-digestion of swine manure, rice straw and industrial clay residuals.

  2016cites this paper
• EFFECTS OF DAIRY MANURE MANAGEMENT SYSTEMS AND WASTEWATER DISINFECTION PROCESSES ON E. COLI PHYLOTYPE DISTRIBUTION A Dissertation by KEYA J. HOWARD

  2016cites this paper
• Biomethanation Potential of Wetland Biomass in Codigestion with Pig Slurry

  2016cites this paper
• Phylogenetic identification of methanogens assimilating acetate-derived carbon in dairy and swine manures.

  2015cites this paper
• Effect of slurry dilution, structural carbohydrates, and exogenous archaea supply on in vitro anaerobe fermentation and methanogens population of swine slurry

  2015cites this paper
• Assessment of Bacterial Community Assembly Patterns and Processes in Pig Manure Slurry

  2015cites this paper
• Estimated human health risks from recreational exposures to stormwater runoff containing animal faecal material

  2015cites this paper
• Anaerobic digestion in sanitization of pig slurry and biomass in agricultural biogas plant.

  2015cites this paper
• Chaotropicity: a key factor in product tolerance of biofuel-producing microorganisms.

  2015cites this paper
• Design and application of a synthetic DNA standard for real-time PCR analysis of microbial communities in a biogas digester

  2015cites this paper
• Evaluation of Petrifilm TM Select E . coli Count Plate medium to discriminate antimicrobial resistant Escherichia coli

  2015cites this paper
• Debaryomyces hansenii and Rhodotorula mucilaginosa comprised the yeast core gut microbiota of wild and reared carnivorous salmonids, croaker and yellowtail.

  2014cites this paper
• Comparison of DNA extraction kits and modification of DNA elution procedure for the quantitation of subdominant bacteria from piggery effluents with real-time PCR

  2014cites this paper
• Detection of pathogens, indicators, and antibiotic resistance genes after land application of poultry litter.

  2014cites this paper
• Experimental study of the impact of antimicrobial treatments on Campylobacter, Enterococcus and PCR-capillary electrophoresis single-strand conformation polymorphism profiles of the gut microbiota of chickens.

  2014cites this paper
• Assessment of Bacterial and Archaeal Community Structure in Swine Wastewater Treatment Processes

  2014influential citation
• Dynamics of Soil Bacterial Communities in Response to Repeated Application of Manure Containing Sulfadiazine

  2014cites this paper
• Microbial examination of anaerobic sludge adaptation to animal slurry

  2014cites this paper
• Effects of Biogas Slurry Pretreatment on Germination and Seedling Growth of Vicia faba L.

  2014cites this paper
• Spatial and temporal variations of microbial community in a mixed plug-flow loop reactor fed with dairy manure

  2014cites this paper
• Methanotrophs, methanogens and microbial community structure in livestock slurry surface crusts

  2014cites this paper
• Bacterial communities in manures of piglets and adult pigs bred with different feeds revealed by 16S rDNA 454 pyrosequencing

  2014cites this paper
• An Integrated Study on Microbial Community in Anaerobic Digestion Systems

  2013cites this paper
• EXPLICIT ROLE OF METHANOGENIC CONSORTIUM DEVELOPED FOR IMPROVING THERMOPHILIC BIOMETHANATION OF URBAN WASTE

  2013cites this paper
• Monitoring the performance and microbial diversity dynamics of a full scale anaerobic wastewater treatment plant treating sugar factory wastewater.

  2013cites this paper
• Soil microbial diversity patterns of a lowland spring environment.

  2013cites this paper
• Physico-chemical characteristics and methanogen communities in swine and dairy manure storage tanks: spatio-temporal variations and impact on methanogenic activity.

  2013cites this paper
• EFFECTS OF BIOGAS SLURRY ON YIELD AND QUALITY OF OIL-SEED RAPE

  2013cites this paper
• Homogeneity and Synchronous Dynamics of Microbial Communities in Particulate Biofilms: from Major Populations to Minor Groups

  2012cites this paper
• Monitoring anaerobic digestion of animal slurry during inhibition and recovery phases

  2012cites this paper
• Capillary electrophoresis single-strand conformation polymorphism for the monitoring of gastrointestinal microbiota of chicken flocks.

  2012cites this paper
• Characterization of the intestinal microbiome and lactobacilli community: influence of dietary and environmental factors

  2012cites this paper
• Occurrence of pathogens in soils and plants in a long-term field study regularly amended with different composts and manure

  2012cites this paper
• Microbiological aspects of methane production during pig manure storage

  2012cites this paper
• Methanoculleus spp. as a biomarker of methanogenic activity in swine manure storage tanks.

  2012cites this paper
• The effect of maize silage as co-substrate for swine manure on the bacterial community structure in biogas plants

  2012influential citation
• Identification of Methanoculleus spp. as Active Methanogens during Anoxic Incubations of Swine Manure Storage Tank Samples

  2012cites this paper
• Functional versus phylogenetic fingerprint analyses for monitoring hydrogen-producing bacterial popu

  2011cites this paper
• Contrasting Diversity Patterns of Crenarchaeal, Bacterial and Fungal Soil Communities in an Alpine Landscape

  2011cites this paper
• Homogeneity and Synchronous Dynamics of Microbial Communities in Particulate Biofilms: from Major Populations to Minor Groups

  2011cites this paper
• Gel Electrophoresis Differential Display-Denaturing Gradient Microbial Community Fingerprinting by

  2011cites this paper
• Effect of oxygen and temperature on the dynamic of the dominant bacterial populations of pig manure and on the persistence of pig‐associated genetic markers, assessed in river water microcosms

  2011influential citation
• Microbial population dynamics and changes in main nutrients during the acidification process of pig manures.

  2011cites this paper
• Effect of temperature on microbial population and performance of an aerobic thermophilic reactor treating cattle slurry and waste food

  2011cites this paper
• Bacterial community dynamics in aerated cow manure slurry at different aeration intensities

  2011cites this paper
• Role of environmental fluctuations and microbial diversity in degradation of hydrocarbons in contaminated sludge.

  2011cites this paper
• Bacterial community analysis of swine manure treated with autothermal thermophilic aerobic digestion

  2011cites this paper
• Diversity of methanogenic archaea in a biogas reactor fed with swine feces as the mono-substrate by mcrA analysis.

  2011cites this paper
• Changes of Physico–Chemical Properties of Pig Slurry During Storage

  2011cites this paper
• Changes in hydrogenase genetic diversity and proteomic patterns in mixed-culture dark fermentation o

  2011cites this paper
• Antimicrobial‐Resistant Indicator Bacteria in Manure and the Tracking of Indicator Resistance Genes

  2011cites this paper
• Nutrients and bacteria in common contiguous Mississippi soils with and without broiler litter fertilization.

  2011cites this paper
• Storage conditions and animal source influence the dominant bacterial community composition in animal manure

  2011cites this paper
• La gestion des effluents d'élevage et la production d'hydrogène sulfuré, cas particulier de la méthanisation

  2011cites this paper
• Does soil biology hold the key to optimized slurry management? A manifesto for research

  2011cites this paper
• EFFECTIVENESS OF THERMAL SANITIZATION OF PIGGERY SLURRY USING HEAT

  2010cites this paper
• Development and application of a functional CE-SSCP fingerprinting method based on [Fe–Fe]-hydrogenase genes for monitoring hydrogen-producing Clostridium in mixed cultures

  2010cites this paper
• Examining Complex Microbial Communities Using the Terminal Restriction Fragment Length Polymorphism Method and Dedicated TRFLP Analysis Software

  2010influential citation
• SIMILAR BACTERIAL COMMUNITY STRUCTURE AND HIGH ABUNDANCE OF SULFONAMIDE RESISTANCE GENES IN FIELD-SCALE MANURES

  2010cites this paper
• Phylogenetic analysis of Bacteroidales 16S rRNA gene sequences from human and animal effluents and assessment of ruminant faecal pollution by real‐time PCR

  2010cites this paper
• Phenotypic and genotypic bacterial antimicrobial resistance in liquid pig manure is variously associated with contents of tetracyclines and sulfonamides

  2010cites this paper
• Anaerobic Digestion of Renewable Biomass: Thermophilic Temperature Governs Methanogen Population Dynamics

  2010cites this paper
• Microbial Community Fingerprinting by Differential Display-Denaturing Gradient Gel Electrophoresis

  2010cites this paper
• Reduction of odorants in swine manure by carbohydrate and bacterial amendments.

  2010cites this paper
• Active community profiling via capillary electrophoresis single-strand conformation polymorphism analysis of amplified 16S rRNA and 16S rRNA genes.

  2010cites this paper
• Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination.

  2010cites this paper
• Spatial and temporal changes in the microbial community in an anaerobic swine waste treatment lagoon.

  2010influential citation
• Human-specific fecal bacteria in wastewater treatment plant effluents.

  2010cites this paper
• Comparative Performance and Microbial Community of Single-phase and Two-phase Anaerobic Systems Co-Digesting Cassava Pulpand Pig Manure

  2010cites this paper
• Comparison of selected nutrients and bacteria from common contiguous soils inside and outside swine lagoon effluent spray fields after long-term use.

  2010cites this paper
• Bacterial community structure and diversity during establishment of an anaerobic bioreactor to treat swine wastewater.

  2010cites this paper
• Prevalence of tetracycline resistance and genotypic analysis of populations of Escherichia coli from animals, carcasses and cuts processed at a pig slaughterhouse.

  2009cites this paper