GenBank

GenBank® (http://www.ncbi.nlm.nih.gov) is a comprehensive database that contains publicly available nucleotide sequences for almost 260 000 formally described species. These sequences are obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects, including whole-genome shotgun (WGS) and environmental sampling projects. Most submissions are made using the web-based BankIt or standalone Sequin programs, and GenBank staff assigns accession numbers upon data receipt. Daily data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensures worldwide coverage. GenBank is accessible through the NCBI Entrez retrieval system, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI home page: www.ncbi.nlm.nih.gov.

• Publication year

  2012

• Venue

  Nucleic Acids Research

• Publication date

  2012-11-26

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1093/nar/gks1195PMID 23193287PMCID 3531190
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Database resources of the National Center for Biotechnology Information

  2012cited by this paper
• BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

  2011cited by this paper
• The sequence read archive: explosive growth of sequencing data

  2011cited by this paper
• The NCBI Taxonomy database

  2011cited by this paper
• GenBank

  2011cited by this paper
• DDBJ progress report

  2010influential reference
• The European Nucleotide Archive

  2010cited by this paper
• NCBI BLAST: a better web interface

  2008cited by this paper
• Bioinformatics - a practical guide to the analysis of genes and proteins

  2001cited by this paper
• Functional annotation of a full-length mouse cDNA collection

  2001cited by this paper
• Submitting DNA sequences to the databases.

  2001cited by this paper
• Protein sequence similarity searches using patterns as seeds.

  1998cited by this paper
• Submitting DNA sequences to the databases.

  1998cited by this paper
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

  1997cited by this paper
• dbEST — database for “expressed sequence tags”

  1993cited by this paper

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