Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Nature Biotechnology

• Publication date

  2006-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1038/nbt1242PMID 16964228
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• BMC Bioinformatics BioMed Central

  2006cited by this paper
• Comparison of the latest commercial short and long oligonucleotide microarray technologies

  2006cited by this paper
• Evaluation of DNA microarray results with quantitative gene expression platforms

  2006cited by this paper
• A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

  2006cited by this paper
• The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

  2006cited by this paper
• Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays

  2006cited by this paper
• Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential

  2005cited by this paper
• Standardizing global gene expression analysis between laboratories and across platforms

  2005cited by this paper
• Multiple-laboratory comparison of microarray platforms

  2005cited by this paper
• Independence and reproducibility across microarray platforms

  2005cited by this paper
• Genomic Analysis of Anti-Hepatitis B Virus (HBV) Activity by Small Interfering RNA and Lamivudine in Stable HBV-Producing Cells

  2005cited by this paper
• Modeling Affymetrix Data at the Probe Level

  2005cited by this paper
• Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays.

  2005cited by this paper
• Development of public toxicogenomics software for microarray data management and analysis.

  2004cited by this paper
• Cross-site comparison of gene expression data reveals high similarity.

  2004cited by this paper
• Are data from different gene expression microarray platforms comparable?

  2004cited by this paper
• Spotted long oligonucleotide arrays for human gene expression analysis.

  2003cited by this paper
• Evaluation of gene expression measurements from commercial microarray platforms.

  2003cited by this paper
• Differential gene expression patterns revealed by oligonucleotide versus long cDNA arrays.

  2002cited by this paper
• Fundamentals of experimental design for cDNA microarrays

  2002cited by this paper
• The contributions of sex, genotype and age to transcriptional variance in Drosophila melanogaster

  2001cited by this paper
• Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models

  2001cited by this paper
• Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray

  1995cited by this paper
• Multiplexed biochemical assays with biological chips

  1993cited by this paper
• Light-directed, spatially addressable parallel chemical synthesis.

  1991cited by this paper

• Integrated transcriptomic and co-expression network analysis identifies immune-metabolic biomarkers of polycystic ovary syndrome in granulosa cells

  2025influential citation
• When Two-Fold Is Not Enough: Quantifying Uncertainty in Low-Copy qPCR

  2025cites this paper
• Transcriptomic profiling and biomarker discovery in pre-eclampsia: An integrated approach leveraging WGCNA and LASSO with ROC validation

  2025cites this paper
• Pathways of Neutrophil Enzymatic Degradation of Resin-based Composites and Adhesives.

  2025cites this paper
• Analysis of meta-transcriptomics and identification of genes linked to bioactive peptides and vitamins in Indonesian tempe.

  2025cites this paper
• Untangling Hidden Players of PCOS: From Transcriptomics to Key Biomarkers Using WGCNA, LASSO and ROC Analysis.

  2025cites this paper
• Reliable biological and multi-omics research through biometrology

  2024cites this paper
• Regulation of antimicrobial peptides in Hermetia illucens in response to fungal exposure

  2024cites this paper
• Differentially expressed heterogeneous overdispersion genes testing for count data

  2024cites this paper
• An integrative analysis of GEO data to identify possible therapeutic biomarkers of prostate cancer and targeting potential protein through Zea mays phytochemicals by virtual screening approaches

  2023influential citation
• Natural phenolic compounds as biofilm inhibitors of multidrug-resistant Escherichia coli – the role of similar biological processes despite structural diversity

  2023cites this paper
• The Performance Evaluation of The Random Forest Algorithm for A Gene Selection in Identifying Genes Associated with Resectable Pancreatic Cancer in Microarray Dataset: A Retrospective Study

  2023cites this paper
• A gene network-driven approach to infer novel pathogenicity-associated genes: application to Pseudomonas aeruginosa PAO1

  2023cites this paper
• Neuroprotective Mechanisms of Amylin Receptor Activation, Not Antagonism, in the APP/PS1 Mouse Model of Alzheimer’s Disease

  2023cites this paper
• STW-MD: a novel spatio-temporal weighting and multi-step decision tree method for considering spatial heterogeneity in brain gene expression data

  2023influential citation
• Differentially Expressed Heterogeneous Overdispersion Genes Testing for Count Data

  2023influential citation
• Peripheral NF-κB dysregulation in people with schizophrenia drives inflammation: putative anti-inflammatory functions of NF-κB kinases

  2022cites this paper
• Machine learning for artemisinin resistance in malaria treatment across in vivo-in vitro platforms

  2022cites this paper
• MiR-150 Attenuates Maladaptive Cardiac Remodeling Mediated by Long Noncoding RNA MIAT and Directly Represses Profibrotic Hoxa4

  2022cites this paper
• De novo RNA sequencing for identification of growth-related genes in Silurus lanzhouensis muscle tissues

  2022cites this paper
• Intermittent hypoxia treatment alleviates memory impairment in the 6-month-old APPswe/PS1dE9 mice and reduces amyloid beta accumulation and inflammation in the brain

  2021cites this paper
• Transcriptome analysis in LRRK2 and idiopathic Parkinson’s disease at different glucose levels

  2021cites this paper
• University of Birmingham Pulmonary MicroRNA changes alter angiogenesis in chronic obstructive pulmonary disease and lung cancer

  2021cites this paper
• Transcriptomic Signatures of Psychomotor Slowing in Peripheral Blood of Depressed Patients: Evidence for Immunometabolic Reprogramming

  2021cites this paper
• Microarray analysis of differentially expressed long non-coding RNAs in daidzein-treated lung cancer cells

  2021cites this paper
• Transcriptome analysis in LRRK2 and idiopathic Parkinson’s disease at different glucose levels

  2021cites this paper
• Gene Expression Microarray: Technical Fundamentals and Data Analysis

  2021cites this paper
• Analyses of Long Noncoding RNA and mRNA Profiles in Subjects with the Phlegm-Dampness Constitution

  2021cites this paper
• The Differential Growth Inhibition of Phytophthora spp. Caused by the Rare Sugar Tagatose Is Associated With Species-Specific Metabolic and Transcriptional Changes

  2021influential citation
• Long non-coding RNAs HERH-1 and HERH-4 facilitate cyclin A2 expression and accelerate cell cycle progression in advanced hepatocellular carcinoma

  2021cites this paper
• Secondary injury and inflammation after intracerebral haemorrhage: a systematic review and meta-analysis of molecular markers in patient brain tissue

  2021cites this paper
• Improved Small Extracellular Vesicle Secretion of Rat Adipose‐Derived Stem Cells by Microgrooved Substrates through Upregulation of the ESCRT‐III‐Associated Protein Alix

  2021cites this paper
• Pulmonary MicroRNA Changes Alter Angiogenesis in Chronic Obstructive Pulmonary Disease and Lung Cancer

  2021cites this paper
• Automated Hypothesis Generation to Identify Signals Relevant in the Development of Mammalian Cell and Tissue Bioprocesses, With Validation in a Retinal Culture System

  2020cites this paper
• Schistosoma haematobium infection is associated with alterations in energy and purine-related metabolism in preschool-aged children

  2020cites this paper
• Preliminary verification of lncRNA ENST00000609755.1 potential ceRNA regulatory network in coronary heart disease.

  2020cites this paper
• Microarray analysis of long non-coding RNA expression profiles in low high-density lipoprotein cholesterol disease

  2020cites this paper
• Research on the circular RNA bioinformatics in patients with acute myocardial infarction

  2020cites this paper
• Analysis of the Molecular Mechanism of Acute Coronary Syndrome Based on circRNA-miRNA Network Regulation

  2020cites this paper
• Protein and Gene Markers of Metabolic Dysfunction and Inflammation Together Associate with Functional Connectivity in Reward and Motor Circuits in Depression.

  2020cites this paper
• Genome-wide transcriptome profile of rice hybrids with and without Oryza rufipogon introgression reveals candidate genes for yield

  2020cites this paper
• lnc-REG3G-3-1/miR-215-3p Promotes Brain Metastasis of Lung Adenocarcinoma by Regulating Leptin and SLC2A5

  2020cites this paper
• Differential Expression and Interaction network construction of Noncoding RNA and mRNA in Heart Tissue associated with Tetralogy of Fallot

  2020cites this paper
• A Specific Blood Signature Reveals Higher Levels of S100A12: A Potential Bladder Cancer Diagnostic Biomarker Along With Urinary Engrailed-2 Protein Detection

  2020cites this paper
• Gene expression profile of cancer stem‑like cells in the SW480 colon adenocarcinoma cell line.

  2019cites this paper
• aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data

  2019cites this paper
• Practical determination of LODP (limit of detection for microarray platform) for the evaluation of microarray platforms.

  2019cites this paper
• Acidity promotes tumour progression by altering macrophage phenotype in prostate cancer

  2019cites this paper
• Differential Expression From Microarray and RNA-seq Experiments

  2019cites this paper
• circRNA-miRNA association for coronary heart disease

  2019cites this paper
• Applications of Microarray in Cancer Cell Signaling Pathways

  2019cites this paper
• Environmentally Relevant Concentrations of Carbamazepine Caused Endocrine-Disrupting Effects on Nontarget Organisms, Chinese Rare Minnows (Gobiocypris rarus).

  2018cites this paper
• Tocopherols inhibit esophageal carcinogenesis through attenuating NF-κB activation and CXCR3-mediated inflammation

  2018cites this paper
• Bioinformatics analysis of gene expression profile data to screen key genes involved in cardiac ischemia-reperfusion injury

  2018cites this paper
• Altered myocardial gene expression profiling in the ischemic tissues at different time points after cardiac ischemia/ reperfusion in rats

  2018cites this paper
• Nasal mucosa and blood cell transcriptome profiles do not reflect respiratory symptoms associated with moisture damage

  2018cites this paper
• Preliminary screening and analysis of metastasis-related lncRNA and co-expressed papillary thyroid carcinoma mRNA

  2018cites this paper
• Dydrogesterone Causes Male Bias and Accelerates Sperm Maturation in Zebrafish ( Danio rerio).

  2018cites this paper
• Human herpesvirus 6 U94 suppresses tumor cell proliferation and invasion by inhibiting Akt/GSK3β signaling in glioma

  2018cites this paper
• Active modules of bipartite metabolic network

  2018cites this paper
• Short‐chain arabinoxylans prepared from enzymatically treated wheat grain exert prebiotic effects during the broiler starter period

  2018cites this paper
• Understanding shared pathogenesis between chronic obstructive pulmonary disease (COPD) and lung cancer by means of cell specific genomics

  2018cites this paper
• Profiles of metabolic gene expression in the white adipose tissue, liver and hypothalamus in leptin knockout (LepΔI14/ΔI14 ) rats

  2017cites this paper
• Peripheral blood microRNAs expression is associated with infant respiratory syncytial virus infection

  2017cites this paper
• Microarray-Based Gene Expression Analysis for Veterinary Pathologists: A Review

  2017cites this paper
• Extending Immunological Profiling in the Gilthead Sea Bream, Sparus aurata, by Enriched cDNA Library Analysis, Microarray Design and Initial Studies upon the Inflammatory Response to PAMPs

  2017cites this paper
• Transcriptome Profiling of In-Vivo Produced Bovine Pre-implantation Embryos Using Two-color Microarray Platform.

  2017cites this paper
• Protein-restricted diet during pregnancy after insemination alters behavioral phenotypes of the progeny

  2017cites this paper
• Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)

  2017cites this paper
• Prediction and visualization of the carcinogenic potential of chemicals with short-term omics assays

  2017cites this paper
• Whole-genome gene expression analysis in urine samples of patients with prostate cancer and benign prostate hyperplasia.

  2017cites this paper
• Peripheral blood microRNAs expression is associated with infant respiratory syncytial virus infection.

  2017cites this paper
• Pro fi les of metabolic gene expression in the white adipose tissue , liver and hypothalamus in leptin knockout ( Lep Δ I 14 / Δ I 14 ) rats

  2017cites this paper
• Omics analysis in Caenorhabditis elegans : pattern inference and interpretation

  2017cites this paper
• Development and validation of a high-throughput transcriptomic biomarker to address 21st century genetic toxicology needs

  2017cites this paper
• Long non-coding RNA expression profiles in gallbladder carcinoma identified using microarray analysis

  2017cites this paper
• Multiple ATP‐binding cassette transporters are involved in insecticide resistance in the small brown planthopper, Laodelphax striatellus

  2017cites this paper
• Long noncoding RNA expression profiles in sub-lethal heat-treated hepatoma carcinoma cells

  2017cites this paper
• Transcriptional and histological alterations in gonad of adult zebrafish after exposure to the synthetic progestin norgestrel

  2017cites this paper
• The Mechanisms of Maize Resistance to Fusarium verticillioides by Comprehensive Analysis of RNA-seq Data

  2016cites this paper
• Effect of storage time on gene expression data acquired from unfrozen archived newborn blood spots.

  2016cites this paper
• Profiling Ethylene-Responsive Genes Expressed in the Latex of the Mature Virgin Rubber Trees Using cDNA Microarray

  2016cites this paper
• A note on statistical repeatability and study design for high‐throughput assays

  2016cites this paper
• Quality assurance for multiplexed assays – how can it be achieved?

  2016cites this paper
• Nanofiber Alignment Regulates NIH3T3 Cell Orientation and Cytoskeletal Gene Expression on Electrospun PCL+Gelatin Nanofibers

  2016cites this paper
• Transcriptional analysis of salt shock in Brassica oleracea.

  2016cites this paper
• Cancer Gene Profiling

  2016cites this paper
• The FDA’s Experience with Emerging Genomics Technologies—Past, Present, and Future

  2016cites this paper
• Gene Expression Analysis: Current Methods

  2016cites this paper
• Integrated microRNA-gene analysis of coronary artery disease based on miRNA and gene expression profiles

  2016cites this paper
• A Systems Biology Comparison of Ovarian Cancers Implicates Putative Somatic Driver Mutations through Protein-Protein Interaction Models

  2016cites this paper
• Developing An Alternative Way to Analyze NanoString Data

  2016cites this paper
• Impacts of environment on gene expression and epigenetic modification in grazing animals

  2016cites this paper
• ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

  2016cites this paper
• Cancer Gene Profiling for Response Prediction.

  2016cites this paper
• A Novel Role for Banana MaASR in the Regulation of Flowering Time in Transgenic Arabidopsis

  2016cites this paper
• Identification of Alzheimer's disease-associated long noncoding RNAs.

  2015cites this paper
• Long noncoding RNA expression profiles in gut tissues constitute molecular signatures that reflect the types of microbes

  2015cites this paper
• Uygur Medicine Xipayi Kui Jie’an Affects Gene Expression profiles in intestinal tissue Lesions in a Rat Model of Ulcerative Colitis

  2015influential citation
• OsSEC24, a functional SEC24-like protein in rice, improves tolerance to iron deficiency and high pH by enhancing H(+) secretion mediated by PM-H(+)-ATPase.

  2015cites this paper