Fully Codon-Optimized luciferase Uncovers Novel Temperature Characteristics of the Neurospora Clock

No abstract is available for this paper.

• Publication year

  2007

• Venue

  Eukaryotic Cell

• Publication date

  2007-08-31

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/EC.00257-07PMID 17766461PMCID PMC2224151
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Chronobiology: Biological Timekeeping

  2009cited by this paper
• The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output.

  2007cited by this paper
• Molecular mechanism of suppression of circadian rhythms by a critical stimulus

  2006cited by this paper
• Feedback repression is required for mammalian circadian clock function

  2006cited by this paper
• How fungi keep time: circadian system in Neurospora and other fungi.

  2006cited by this paper
• Forward Genetic Analysis of the Circadian Clock Separates the Multiple Functions of ZEITLUPE1[W]

  2006cited by this paper
• Temperature-modulated alternative splicing and promoter use in the Circadian clock gene frequency.

  2005cited by this paper
• Analysis of circadian rhythms in Neurospora: overview of assays and genetic and molecular biological manipulation.

  2005cited by this paper
• Temperature Regulates Transcription in the Zebrafish Circadian Clock

  2005cited by this paper
• Codon bias and heterologous protein expression.

  2004cited by this paper
• Time-Lapse Analysis of the Circadian Rhythms of Conidiation and Growth Rate in Neurospora

  2004cited by this paper
• Calcium measurement in living filamentous fungi expressing codon‐optimized aequorin

  2004cited by this paper
• Circadian and light-induced expression of luciferase in Neurospora crassa.

  2003influential reference
• Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY

  2003cited by this paper
• Distinct Signaling Pathways from the Circadian Clock Participate in Regulation of Rhythmic Conidiospore Development in Neurospora crassa

  2002cited by this paper
• Circadian Clock-Specific Roles for the Light Response Protein WHITE COLLAR-2

  2001influential reference
• Codon usage tabulated from international DNA sequence databases: status for the year 2000

  2000cited by this paper
• Improved plasmids for gene targeting at the his-3 locus of Neurospora crassa by electroporation: Correction

  2000cited by this paper
• The use of the luciferase reporter system forin planta gene expression studies

  2000cited by this paper
• The fluffy gene of Neurospora crassa encodes a Gal4p-type C6 zinc cluster protein required for conidial development.

  1998cited by this paper
• How temperature changes reset a circadian oscillator.

  1998cited by this paper
• Improved plasmids for gene targeting at the his-3 locus of Neurospora crassa by electroporation

  1997cited by this paper
• Long-term monitoring of circadian rhythms in c-fos gene expression from suprachiasmatic nucleus cultures.

  1997cited by this paper
• Introns act post-transcriptionally to increase expression of the Arabidopsis thaliana tryptophan pathway gene PAT1.

  1997cited by this paper
• Novel features of drosophila period Transcription revealed by real-time luciferase reporting.

  1996cited by this paper
• Distinct cis-acting elements mediate clock, light, and developmental regulation of the Neurospora crassa eas (ccg-2) gene

  1996influential reference
• Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides.

  1995influential reference
• Light-induced resetting of a circadian clock is mediated by a rapid increase in frequency transcript.

  1995cited by this paper
• Temperature Effects on the Resetting of the Phase of the Neurospora Circadian Rhythm

  1994cited by this paper
• Circadian clock mutants of cyanobacteria.

  1994cited by this paper
• Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria.

  1993cited by this paper
• A novel circadian phenotype based on firefly luciferase expression in transgenic plants.

  1992cited by this paper
• Modulation of firefly luciferase stability and impact on studies of gene regulation.

  1991cited by this paper
• An apparent rare-codon effect on the rate of translation of a Neurospora gene.

  1991cited by this paper
• Closely watched clocks: molecular analysis of circadian rhythms in Neurospora and Drosophila.

  1990cited by this paper
• Locally Weighted Regression: An Approach to Regression Analysis by Local Fitting

  1988cited by this paper
• Temperature Compensation of Circadian Period Length in Clock Mutants of Neurospora crassa.

  1981cited by this paper
• The geometry of biological time

  1980cited by this paper
• TEMPERATURE‐SENSITIVITY OF LIGHT‐INDUCED PHASE SHIFTING OF THE CIRCADIAN CLOCK OF NEUROSPORA

  1980cited by this paper
• Effects of temperature perturbations on circadian conidiation in neurospora.

  1979cited by this paper
• Kinetics of the firefly luciferase catalyzed reactions.

  1974cited by this paper
• Circadian rhythms: mechanism of luciferase activity changes in Gonyaulax.

  1972cited by this paper
• [4] Genetic and microbiological research techniques for Neurospora crassa

  1970influential reference
• Circadian nature of a rhythm expressed by an invertaseless strain of Neurospora crassa.

  1966cited by this paper
• “SORBOSE TOXICITY” IN NEUROSPORA

  1963cited by this paper
• Colonial Growth of Neurospora

  1961cited by this paper

• Origin of the clock in Neurospora crassa

  2026cites this paper
• Clock Regulation and Fungal Physiology: Molecular Mechanisms Underpinning the Timely Control of Just About Everything.

  2025cites this paper
• DNA Sequence Changes Resulting from Codon Optimization Affect Gene Expression in Pichia pastoris by Altering Chromatin Accessibility

  2025cites this paper
• Individual peroxiredoxin or Tor pathway components are not required for circadian clock function in Neurospora crassa.

  2025cites this paper
• Circadian clock is critical for fungal pathogenesis by regulating zinc starvation response and secondary metabolism

  2025cites this paper
• Application of a One-Step method for rapid detection of nucleic acids from fungi

  2025cites this paper
• Checkpoint kinases regulate the circadian clock after DNA damage by influencing chromatin dynamics

  2025cites this paper
• Circadian rhythms: pervasive, and often times evasive

  2025cites this paper
• Paf1C regulates the Neurospora circadian clock by promoting the transcription elongation of frequency

  2025cites this paper
• Core Clock Protein Subcellular Dynamics Coordinate Local and Global Circadian Control in Syncytia

  2025cites this paper
• A Daily Cycle of White Collar Complex Dephosphorylation Sustains Circadian Rhythmicity in Neurospora

  2025cites this paper
• The auxotrophic formate (for) mutant of Neurospora crassa has significantly delayed growth but a normal circadian clock

  2024cites this paper
• Weak and strong phase response curves of the onion fly circadian clock at temperature changes of 1 °C and 4 °C.

  2024cites this paper
• Engineering of Aspergillus niger for efficient production of d-xylitol from l-arabinose

  2024cites this paper
• A novel luciferase‐based reporter tool to monitor the dynamics of carbon catabolite repression in filamentous fungi

  2024cites this paper
• The clock in growing hyphae and their synchronization in Neurospora crassa

  2024influential citation
• Botrytis cinerea tolerates phytoalexins produced by Solanaceae and Fabaceae plants through an efflux transporter BcatrB and metabolizing enzymes

  2023cites this paper
• Domains required for the interaction of the central negative element FRQ with its transcriptional activator WCC within the core circadian clock of Neurospora

  2023cites this paper
• Conformational changes in the negative arm of the circadian clock correlate with dynamic interactomes involved in post-transcriptional regulation

  2023cites this paper
• Domains Required for FRQ-WCC Interaction within the Core Circadian Clock of Neurospora

  2023cites this paper
• The macroscopic limit to synchronization of cellular clocks in single cells of Neurospora crassa

  2022cites this paper
• The nutrient-sensing GCN2 signaling pathway is essential for circadian clock function by regulating histone acetylation under amino acid starvation

  2022cites this paper
• Developing a Temperature-Inducible Transcriptional Rheostat in Neurospora crassa

  2022cites this paper
• Antisense Transcription of the Neurospora Frequency Gene Is Rhythmically Regulated by CSP-1 Repressor but Dispensable for Clock Function

  2022cites this paper
• Natural variation in codon bias and mRNA folding strength interact synergistically to modify protein expression in Saccharomyces cerevisiae

  2022cites this paper
• PRD-2 mediates clock-regulated perinuclear localization of clock gene RNAs within the circadian cycle of Neurospora

  2022cites this paper
• A circadian clock translational control mechanism targets specific mRNAs to cytoplasmic messenger ribonucleoprotein granules

  2022cites this paper
• Circadian clock control of tRNA synthetases in Neurospora crassa

  2022influential citation
• Functional analysis of 110 phosphorylation sites on the circadian clock protein FRQ identifies clusters determining period length and temperature compensation

  2022cites this paper
• Functional Imaging Using Bioluminescent Reporter Genes in Living Subjects

  2021cites this paper
• Conformational Changes in the Negative Arm of the Circadian Clock Correlate with Dynamic Interactomes Involved in Post-transcriptionally Regulated Processes

  2021cites this paper
• Genome-wide role of codon usage on transcription and identification of potential regulators

  2021cites this paper
• BRED: bioluminescence energy transfer to dye for monitoring ceramide trafficking in cell

  2021cites this paper
• A global search for novel transcription factors impacting the Neurospora crassa circadian clock

  2021cites this paper
• 4 From Genetics to Molecular Oscillations: The Circadian Clock in Neurospora crassa

  2020cites this paper
• Identifying a stochastic clock network with light entrainment for single cells of Neurosporacrassa

  2020cites this paper
• Evaluating the circadian rhythm and response to glucose addition in dispersed growth cultures of Neurospora crassa.

  2020cites this paper
• Nonsense mediated decay and a novel protein Period-2 regulate casein kinase I in an opposing manner to control circadian period in Neurospora crassa

  2020cites this paper
• PRD-2 directly regulates casein kinase I and counteracts nonsense-mediated decay in the Neurospora circadian clock

  2020cites this paper
• A circadian clock in Neurospora crassa functions during plant cell wall deconstruction.

  2020cites this paper
• Codon bias and mRNA folding stability: Two natural controls of protein expression dynamics

  2020cites this paper
• Circadian clock control of eIF2α phosphorylation is necessary for rhythmic translation initiation

  2020influential citation
• The Phospho-Code Determining Circadian Feedback Loop Closure and Output in Neurospora.

  2019cites this paper
• Integration of Self and Non-self Recognition Modulates Asexual Cell-to-Cell Communication in Neurospora crassa

  2019cites this paper
• Forward and reverse genetic approaches to unveil novel regulators of the Neurospora crassa circadian clock

  2019influential citation
• Development and Characterization of Novel Bioluminescent Reporters of Cellular Activity

  2019cites this paper
• Habitat-Specific Clock Variation and Its Consequence on Reproductive Fitness

  2019cites this paper
• Developing a tetO/TetR system in Neurospora crassa.

  2019cites this paper
• Construction of a Codon-Adapted Nourseotricin-Resistance Marker Gene for Efficient Targeted Gene Deletion in the Mycophenolic Acid Producer Penicillium brevicompactum

  2019cites this paper
• Regulation of the Neurospora Circadian Clock by the Spliceosome Component PRP5

  2019cites this paper
• What is Phase in Cellular Clocks?

  2019cites this paper
• Transcription factor CBF-1 is critical for circadian gene expression by modulating WHITE COLLAR complex recruitment to the frq locus

  2018cites this paper
• First Evidence for Internal Ribosomal Entry Sites in Diverse Fungal Virus Genomes

  2018cites this paper
• Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

  2018cites this paper
• Characterizing Time-of-Day Conformational Changes in the Intrinsically Disordered Proteins of the Circadian Clock.

  2018cites this paper
• A HAD family phosphatase CSP-6 regulates the circadian output pathway in Neurospora crassa

  2018cites this paper
• The Clock Keeps on Ticking: Emerging Roles for Circadian Regulation in the Control of Fungal Physiology and Pathogenesis.

  2018cites this paper
• HisB as novel selection marker for gene targeting approaches in Aspergillus niger

  2017cites this paper
• In-vivo monitoring of infectious diseases in living animals using bioluminescence imaging

  2017cites this paper
• Transcriptional repression of frequency by the IEC-1-INO80 complex is required for normal Neurospora circadian clock function

  2017cites this paper
• DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition.

  2017cites this paper
• Up-Frameshift Protein UPF1 Regulates Neurospora crassa Circadian and Diurnal Growth Rhythms

  2017cites this paper
• Aging and the Biological Clock

  2017cites this paper
• Seeing the world differently: variability in the photosensory mechanisms of two model fungi.

  2016cites this paper
• Development of an expression system for heterologous protein expression in fungus

  2016cites this paper
• Suppression of WHITE COLLAR-independent frequency Transcription by Histone H3 Lysine 36 Methyltransferase SET-2 Is Necessary for Clock Function in Neurospora*

  2016cites this paper
• Characterizing the Role of a Phosphorelay in the Circadian Regulation of the OS Mapk Pathway in Neurospora crassa

  2016cites this paper
• Codon usage is an important determinant of gene expression levels largely through its effects on transcription

  2016cites this paper
• Circadian clock regulation of mRNA translation through eukaryotic elongation factor eEF-2

  2016cites this paper
• The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion

  2016cites this paper
• Tet-on, or Tet-off, that is the question: Advanced conditional gene expression in Aspergillus.

  2016influential citation
• Modulation of Circadian Gene Expression and Metabolic Compensation by the RCO-1 Corepressor of Neurospora crassa

  2016cites this paper
• The Stress Response and Circadian Regulation of Translation in Neurospora crassa

  2016cites this paper
• Evaluating the role of light and of a circadian clock in the virulence of the necrotrophic fungus Botrytis cinerea

  2015influential citation
• Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding.

  2015cites this paper
• Efficient gene editing in Neurospora crassa with CRISPR technology

  2015cites this paper
• Around the Fungal Clock: Recent Advances in the Molecular Study of Circadian Clocks in Neurospora and Other Fungi.

  2015cites this paper
• Fungal photobiology: visible light as a signal for stress, space and time

  2015cites this paper
• The chestnut blight fungus for studies on virus/host and virus/virus interactions: from a natural to a model host.

  2015cites this paper
• Mathematical modeling and validation of glucose compensation of the neurospora circadian clock.

  2015cites this paper
• A circadian oscillator in the fungus Botrytis cinerea regulates virulence when infecting Arabidopsis thaliana

  2015cites this paper
• Dissecting the mechanisms of the clock in Neurospora.

  2015influential citation
• Role for Protein Kinase A in the Neurospora Circadian Clock by Regulating White Collar-Independent frequency Transcription through Phosphorylation of RCM-1

  2015cites this paper
• Decoupling circadian clock protein turnover from circadian period determination

  2015cites this paper
• The frequency natural antisense transcript first promotes, then represses, frequency gene expression via facultative heterochromatin

  2015cites this paper
• How Light Resets Circadian Clocks

  2015cites this paper
• EXAMINING FLEXIBLE BIOLOGICAL STRUCTURES

  2015cites this paper
• Methods to study molecular mechanisms of the Neurospora circadian clock.

  2015cites this paper
• The aging biological clock in Neurospora crassa

  2014influential citation
• Effects of codon optimization on the mRNA levels of heterologous genes in filamentous fungi

  2014cites this paper
• Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential

  2014cites this paper
• A Kinetic Study of the Effects of Light on Circadian Rhythmicity of the frq Promoter of Neurospora crassa

  2014cites this paper
• Flippase (FLP) recombinase-mediated marker recycling in the dermatophyte Arthroderma vanbreuseghemii.

  2014cites this paper
• Transcriptional interference by antisense RNA is required for circadian clock function

  2014cites this paper
• Bright to Dim Oscillatory Response of the Neurospora Circadian Oscillator

  2014cites this paper
• Circadian Oscillator Neurospora Bright to Dim Oscillatory Response of the

  2014cites this paper
• 6 Photobiology and Circadian Clocks in Neurospora

  2014cites this paper
• Circadian rhythms synchronize mitosis in Neurospora crassa

  2014cites this paper
• Mechanism of the Neurospora Circadian Clock, a FREQUENCY-centric View

  2014cites this paper
• Measurement of luciferase rhythms.

  2014cites this paper