The lba1 mutation of UPF1 RNA helicase involved in nonsense-mediated mRNA decay causes pleiotropic phenotypic changes and altered sugar signalling in Arabidopsis.

No abstract is available for this paper.

• Publication year

  2006

• Venue

  The Plant Journal

• Publication date

  2006-07-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/J.1365-313X.2006.02771.XPMID 16740149
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  1996influential reference
• Purification and characterization of the Upf1 protein: a factor involved in translation and mRNA degradation.

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