Inference of domestication history and differentiation between early‐ and late‐flowering varieties in pearl millet

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Molecular Ecology

• Publication date

  2015-04-01

• Fields of study

  Agricultural and Food Sciences, Medicine, Biology

• Identifiers
  DOI 10.1111/mec.13119PMID 25705965
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• A question of timing: spatio-temporal structure and mechanisms of early agriculture expansion in West Africa

  2014cited by this paper
• Storytelling and story testing in domestication

  2014cited by this paper
• Independent domestications of cultivated tree peonies from different wild peony species

  2014cited by this paper
• Model choice for phylogeographic inference using a large set of models

  2014cited by this paper
• Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone

  2014cited by this paper
• Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet

  2013cited by this paper
• MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

  2013influential reference
• Evolution of crop species: genetics of domestication and diversification

  2013cited by this paper
• Polymorphism pattern at a miniature inverted‐repeat transposable element locus downstream of the domestication gene Teosinte‐branched1 in wild and domesticated pearl millet

  2013cited by this paper
• Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication.

  2012influential reference
• Mesoamerican origin of the common bean (Phaseolus vulgaris L.) is revealed by sequence data

  2012cited by this paper
• A critical review of the protracted omestic tion model for N arE stern founder crops : lin ar regression , long-distance gene flow , archaeological , and archaeobotanical evidence

  2012cited by this paper
• PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

  2012cited by this paper
• The trouble with isolation by distance

  2012influential reference
• Early agricultural pathways: moving outside the 'core area' hypothesis in Southwest Asia.

  2012cited by this paper
• Molecular evidence for a single evolutionary origin of domesticated rice

  2011cited by this paper
• Investigation of the domestication of common bean (Phaseolus vulgaris) using multilocus sequence data.

  2011cited by this paper
• Reply to Ge and Sang: A single origin of domesticated rice

  2011cited by this paper
• abc: an R package for approximate Bayesian computation (ABC)

  2011cited by this paper
• Inappropriate model rejects independent domestications of indica and japonica rice

  2011cited by this paper
• 4500-Year old domesticated pearl millet (Pennisetum glaucum) from the Tilemsi Valley, Mali: New insights into an alternative cereal domestication pathway

  2011cited by this paper
• Evolutionary dynamics of cycle length in pearl millet: the role of farmer’s practices and gene flow

  2011influential reference
• A simulation of the effect of inbreeding on crop domestication genetics with comments on the integration of archaeobotany and genetics: a reply to Honne and Heun

  2010cited by this paper
• ABCtoolbox: a versatile toolkit for approximate Bayesian computations

  2010cited by this paper
• Patterns of molecular and phenotypic diversity in pearl millet [Pennisetum glaucum (L.) R. Br.] from West and Central Africa and their relation to geographical and environmental parameters

  2010cited by this paper
• THE STATE OF THE FIELD: Spatially explicit Bayesian clustering models in population genetics

  2010influential reference
• Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure

  2010cited by this paper
• Genetic signals of origin, spread, and introgression in a large sample of maize landraces

  2010cited by this paper
• Spatial inference of admixture proportions and secondary contact zones.

  2009influential reference
• Association Studies Identify Natural Variation at PHYC Linked to Flowering Time and Morphological Variation in Pearl Millet

  2009cited by this paper
• Rapid radiation in spiny lobsters (Palinurus spp) as revealed by classic and ABC methods using mtDNA and microsatellite data

  2009cited by this paper
• DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

  2009cited by this paper
• Genetic structure and isolation by distance in a landrace of Thai rice

  2009cited by this paper
• A natural mutation in rc reverts white-rice-pericarp to red and results in a new, dominant, wild-type allele: Rc-g

  2008cited by this paper
• Multiple domestications do not appear monophyletic

  2008cited by this paper
• Joint determination of topology, divergence time, and immigration in population trees

  2008influential reference
• Genetic Diversity in the

  2008cited by this paper
• Development and mapping of Simple Sequence Repeat markers for pearl millet from data mining of Expressed Sequence Tags

  2008influential reference
• Molecular insights into the evolution of crop plants.

  2008cited by this paper
• ADZE: a rarefaction approach for counting alleles private to combinations of populations

  2008cited by this paper
• Detecting multiple origins of domesticated crops

  2008influential reference
• Reply to Ross-Ibarra and Gaut: Multiple domestications do appear monophyletic if an appropriate model is used

  2008cited by this paper
• Role of seed flow on the pattern and dynamics of pearl millet (Pennisetum glaucum [L.] R. Br.) genetic diversity assessed by AFLP markers: a study in south-western Niger

  2008cited by this paper
• The genetic expectations of a protracted model for the origins of domesticated crops

  2008cited by this paper
• Niger-wide assessment of in situ sorghum genetic diversity with microsatellite markers

  2008cited by this paper
• Phylogeny and origin of pearl millet (Pennisetum glaucum [L.] R. Br) as revealed by microsatellite loci

  2008cited by this paper
• Experimental Estimation of Mutation Rates in a Wheat Population With a Gene Genealogy Approach

  2008cited by this paper
• genepop’007: a complete re‐implementation of the genepop software for Windows and Linux

  2008cited by this paper
• At-sea distribution and scale-dependent foraging behaviour of petrels and albatrosses: a comparative study.

  2007cited by this paper
• The ade4 Package: Implementing the Duality Diagram for Ecologists

  2007cited by this paper
• Prediction of Protein-protein Interactions on the Basis of Evolutionary Conservation of Protein Functions

  2007influential reference
• Mechanisms of adaptation to climate variability in West African pearl millet landraces – a preliminary

  2007cited by this paper
• CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

  2007influential reference
• Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study

  2007cited by this paper
• Site‐specific genetic divergence in parallel hybrid zones suggests nonallopatric evolution of reproductive barriers

  2006cited by this paper
• Diversity of wild and cultivated pearl millet accessions (Pennisetum glaucum [L.] R. Br.) in Niger assessed by microsatellite markers

  2006cited by this paper
• Genetic diversity and gene flow among pearl millet crop/weed complex: a case study

  2006cited by this paper
• Bayesian Clustering Using Hidden Markov Random Fields in Spatial Population Genetics

  2006influential reference
• Refugia, differentiation and postglacial migration in arctic‐alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.)

  2006cited by this paper
• Multiplication and preliminary characterization of west and central African pearl millet landraces

  2006cited by this paper
• Molecular population genetics and the search for adaptive evolution in plants.

  2005cited by this paper
• Multiple origin of metallicolous populations of the pseudometallophyte Arabidopsis halleri (Brassicaceae) in central Europe: the cpDNA testimony

  2005cited by this paper
• Bayesian Analysis of an Admixture Model With Mutations and Arbitrarily Linked Markers

  2005influential reference
• Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus)

  2005cited by this paper
• Molecular evidence for glacial refugia of mountain plants in the European Alps

  2005cited by this paper
• Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.

  2005cited by this paper
• Counting Alleles with Rarefaction: Private Alleles and Hierarchical Sampling Designs

  2004cited by this paper
• An integrated genetic map and a new set of simple sequence repeat markers for pearl millet, Pennisetum glaucum

  2004cited by this paper
• AFLP data and the origins of domesticated crops.

  2004cited by this paper
• Patterns of population structure in maize landraces from the Central Valleys of Oaxaca in Mexico

  2004cited by this paper
• Development and Utilization of SSRs to Estimate the Degree of Genetic Relationships in a Collection of Pearl Millet Germplasm

  2003cited by this paper
• A comparison of bayesian methods for haplotype reconstruction from population genotype data.

  2003influential reference
• Testing for asymmetrical gene flow in a Drosophila melanogaster body-size cline.

  2003cited by this paper
• distruct: a program for the graphical display of population structure

  2003cited by this paper
• Gene flow and the limits to natural selection

  2002cited by this paper
• Approximate Bayesian computation in population genetics.

  2002cited by this paper
• Asymmetry of gene flow and differential geographical structure of molecular diversity in wild and domesticated common bean (Phaseolus vulgaris L.) from Mesoamerica

  2002cited by this paper
• Rate and pattern of mutation at microsatellite loci in maize.

  2002cited by this paper
• Construction of a BAC library of pearl millet, Pennisetum glaucum

  2001cited by this paper
• A new statistical method for haplotype reconstruction from population data.

  2001influential reference
• Detection of reduction in population size using data from microsatellite loci

  2001cited by this paper
• Genetic control of domestication traits in pearl millet (Pennisetum glaucum L., Poaceae)

  2000cited by this paper
• The Influence of Dispersal and Diet Breadth on Patterns of Genetic Isolation by Distance in Phytophagous Insects

  1998cited by this paper
• Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance.

  1997cited by this paper
• Preliminary Vegetation Maps of the World since the Last Glacial Maximum: An Aid to Archaeological Understanding

  1997cited by this paper
• Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection.

  1997cited by this paper
• Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL.

  1996cited by this paper
• High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco

  1996cited by this paper
• GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations.

  1996influential reference
• GENEPOP (version 1.2): population genetic software for exact tests and ecumenicism

  1995cited by this paper
• Wild pearl millet population (Pennisetum glaucum, Poaceae) integrity in agricultural Sahelian areas. An example from Keita (Niger)

  1994cited by this paper
• Isozymic classification of pearl millet (Pennisetum glaucum, Poaceae) landraces from Niger (West Africa)

  1994cited by this paper
• Enzyme diversity in pearl millet (Pennisetum glaucum L.)

  1992influential reference
• Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

  1992cited by this paper
• Estimation of levels of gene flow from DNA sequence data.

  1992cited by this paper
• Molecular evolution of alcohol dehydrogenase 1 in members of the grass family.

  1991influential reference
• Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

  1989cited by this paper
• Enzyme diversity in pearl millet (Pennisetum glaucum)

  1987cited by this paper
• Molecular Evolutionary Genetics

  1987cited by this paper
• ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

  1984cited by this paper

• Harnessing genetic diversity for drought tolerance and forage yield improvement in pearl millet germplasms through a prebreeding framework

  2025cites this paper
• Genome-wide identification, evolution, and expression profiling of bHLH transcription factor family in response to abiotic stresses in pearl millet (Pennisetum glaucum L.)

  2025cites this paper
• Understanding genetic diversity in drought-adaptive hybrid parental lines in pearl millet

  2024cites this paper
• Biochemical signaling of pearl millet resistance against major insect pest

  2024cites this paper
• Genomic resources, opportunities, and prospects for accelerated improvement of millets

  2024cites this paper
• Characterization and Trait Association Analysis of 27 Pearl Millet Landraces in Southern Tunisia

  2023cites this paper
• Genetic insights in pearl millet breeding in the genomic era: challenges and prospects

  2022cites this paper
• Genomic footprints of selection in early-and late-flowering pearl millet landraces

  2022cites this paper
• Phytoliths as indicators of plant water availability: The case of millets cultivation in the Indus Valley civilization

  2022cites this paper
• APPLICATIONS OF MOLECULAR MARKERS AND GENOMIC TOOLS IN PEARL MILLET [CENCHRUS AMERICANUS (L.) MORRONESYN. PENNISETUM GLAUCUM (L.) R. BR.]

  2021cites this paper
• The History of Lentil (Lens culinaris subsp. culinaris) Domestication and Spread as Revealed by Genotyping-by-Sequencing of Wild and Landrace Accessions

  2021cites this paper
• Transition From Wild to Domesticated Pearl Millet (Pennisetum glaucum) Revealed in Ceramic Temper at Three Middle Holocene Sites in Northern Mali

  2021cites this paper
• Performance of dual-purpose pearl millet genotypes in West Africa: Importance of morphology and phenology

  2020cites this paper
• Population Genomics of Pearl Millet

  2020cites this paper
• Patterns of genotype variation and demographic history in Lindera glauca (Lauraceae), an apomict‐containing dioecious forest tree

  2020cites this paper
• African and Asian origin pearl millet populations: Genetic diversity pattern and its association with yield heterosis

  2020cites this paper
• Proso Millet (Panicum miliaceum L.) Breeding: Progress, Challenges and Opportunities

  2019cites this paper
• PEARL MILLET CHARACTERISTICS IN FUTCHIMIRAM, NORTHEASTERN YOBE STATE, NIGERIA

  2018cites this paper
• The origin of wild populations of Toxicodendron succedaneum on mainland Japan revealed by genetic variation in chloroplast and nuclear DNA

  2018cites this paper
• Genetic Diversity and Domestication Footprints of Chinese Cherry [Cerasus pseudocerasus (Lindl.) G.Don] as Revealed by Nuclear Microsatellites

  2018cites this paper
• A western Sahara centre of domestication inferred from pearl millet genomes

  2018cites this paper
• New Genetic Insights into Pearl Millet Diversity As Revealed by Characterization of Early- and Late-Flowering Landraces from Senegal

  2017influential citation
• Unexpected pattern of pearl millet genetic diversity among ethno-linguistic groups in the Lake Chad Basin

  2017influential citation
• The genomics of recovery from coral bleaching

  2017cites this paper
• Flux de gènes et évolution des ressources génétiques du mil (Pennisetum glaucum) dans le Bassin du Lac Tchad : rôle de la diversité socio-culturelle

  2016cites this paper
• Genome scan reveals selection acting on genes linked to stress response in wild pearl millet

  2016cites this paper
• Crop Adaptation and Improvement for Drought-Prone Environments

  year unknowncites this paper