Small RNAs: a new paradigm in plant-microbe interactions.

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Annual Review of Phytopathology

• Publication date

  2014-08-04

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1146/annurev-phyto-102313-045933PMID 25090478
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells

  2014cited by this paper
• Small RNA sX13: A Multifaceted Regulator of Virulence in the Plant Pathogen Xanthomonas

  2013cited by this paper
• Contribution of small RNA pathway components in plant immunity.

  2013cited by this paper
• Identification of MiRNA from Eggplant (Solanum melongena L.) by Small RNA Deep Sequencing and Their Response to Verticillium dahliae Infection

  2013cited by this paper
• Cas9 as a versatile tool for engineering biology

  2013cited by this paper
• Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs

  2013cited by this paper
• Multiple Rice MicroRNAs Are Involved in Immunity against the Blast Fungus Magnaporthe oryzae1[C][W][OPEN]

  2013cited by this paper
• CRISPRs: Molecular Signatures Used for Pathogen Subtyping

  2013cited by this paper
• Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

  2013cited by this paper
• Small RNAs, big impact: small RNA pathways in transposon control and their effect on the host stress response

  2013cited by this paper
• Multiplex and homologous recombination–mediated genome editing in Arabidopsis and Nicotiana benthamiana using guide RNA and Cas9

  2013cited by this paper
• Functional Diversity of RNAi-Associated sRNAs in Fungi

  2013cited by this paper
• Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

  2013cited by this paper
• Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

  2013cited by this paper
• Targeted mutagenesis in the model plant Nicotiana benthamiana using Cas9 RNA-guided endonuclease

  2013cited by this paper
• RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

  2013cited by this paper
• Transgenerational gene silencing causes gain of virulence in a plant pathogen

  2013cited by this paper
• An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication

  2013cited by this paper
• The RNAi machinery regulates growth and development in the filamentous fungus Trichoderma atroviride

  2013cited by this paper
• Small RNA profiling reveals phosphorus deficiency as a contributing factor in symptom expression for citrus huanglongbing disease.

  2013cited by this paper
• A CRISPR-CAS System Mediates Bacterial Innate Immune Evasion and Virulence

  2013cited by this paper
• Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

  2013cited by this paper
• miR482 Regulation of NBS-LRR Defense Genes during Fungal Pathogen Infection in Cotton

  2013cited by this paper
• Regulation of bacterial metabolism by small RNAs using diverse mechanisms.

  2013cited by this paper
• Identification of Small RNAs Associated with Meiotic Silencing by Unpaired DNA

  2013cited by this paper
• Identification of microRNA-Like RNAs in the Filamentous Fungus Trichoderma reesei by Solexa Sequencing

  2013cited by this paper
• Small RNA—the Secret of Noble Rot

  2013cited by this paper
• Small RNAs: RNAs attack!

  2013cited by this paper
• Classification and comparison of small RNAs from plants.

  2013cited by this paper
• Genetic Screens in Human Cells Using the CRISPR-Cas9 System

  2013cited by this paper
• Homologous recombination as a mechanism to recognize repetitive DNA sequences in an RNAi pathway.

  2013cited by this paper
• A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides

  2013cited by this paper
• Genome evolution in filamentous plant pathogens: why bigger can be better

  2012cited by this paper
• Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

  2012cited by this paper
• Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements[W]

  2012cited by this paper
• SID-5 is an endosome-associated protein required for efficient systemic RNAi in C. elegans.

  2012cited by this paper
• Widespread dynamic DNA methylation in response to biotic stress

  2012cited by this paper
• Uptake of extracellular double-stranded RNA by SID-2.

  2012cited by this paper
• TLR13 Recognizes Bacterial 23S rRNA Devoid of Erythromycin Resistance–Forming Modification

  2012cited by this paper
• The Csr/Rsm system of Yersinia and related pathogens

  2012cited by this paper
• RNA-guided genetic silencing systems in bacteria and archaea

  2012cited by this paper
• Phenotypic Diversification Is Associated with Host-Induced Transposon Derepression in the Sudden Oak Death Pathogen Phytophthora ramorum

  2012cited by this paper
• RNA interference pathways in fungi: mechanisms and functions.

  2012cited by this paper
• A MicroRNA Superfamily Regulates Nucleotide Binding Site–Leucine-Rich Repeats and Other mRNAs[W][OA]

  2012cited by this paper
• TLRs as miRNA receptors.

  2012cited by this paper
• Dynamics and Innovations within Oomycete Genomes: Insights into Biology, Pathology, and Evolution

  2012cited by this paper
• MicroRNA regulated defense responses in Triticum aestivum L. during Puccinia graminis f.sp. tritici infection

  2012cited by this paper
• Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans?

  2012cited by this paper
• Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans

  2012cited by this paper
• MicroRNA regulation of plant innate immune receptors

  2012cited by this paper
• Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies.

  2012cited by this paper
• Hfq Influences Multiple Transport Systems and Virulence in the Plant Pathogen Agrobacterium tumefaciens

  2012cited by this paper
• Genome-wide identification and profiling of microRNA-like RNAs from Metarhizium anisopliae during development.

  2012cited by this paper
• Conserved tyrosine kinase promotes the import of silencing RNA into Caenorhabditis elegans cells

  2012cited by this paper
• DNA replication, RNAi and epigenetic inheritance

  2012cited by this paper
• Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing

  2012cited by this paper
• Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

  2011cited by this paper
• Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

  2011cited by this paper
• Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA

  2011cited by this paper
• Boty-like retrotransposons in the filamentous fungus Botrytis cinerea contain the additional antisense gene brtn.

  2011cited by this paper
• Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans.

  2011cited by this paper
• Compatibility with Killer Explains the Rise of RNAi-Deficient Fungi

  2011cited by this paper
• Silencing of the PiAvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element.

  2011cited by this paper
• Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

  2011cited by this paper
• Hfq and its constellation of RNA

  2011cited by this paper
• Diverse small non-coding RNAs in RNA interference pathways.

  2011cited by this paper
• Arabidopsis Argonaute 2 regulates innate immunity via miRNA393(∗)-mediated silencing of a Golgi-localized SNARE gene, MEMB12.

  2011cited by this paper
• Identification and functional characterization of small non-coding RNAs in Xanthomonas oryzae pathovar oryzae

  2011cited by this paper
• How filamentous pathogens co-opt plants: the ins and outs of fungal effectors.

  2011cited by this paper
• Evolution and Functional Diversification of MIRNA Genes

  2011cited by this paper
• RNA Interference in Fungi: Pathways, Functions, and Applications

  2011cited by this paper
• Microarray profiling reveals microRNAs involving soybean resistance to Phytophthora sojae.

  2011cited by this paper
• The RNA Silencing Enzyme RNA Polymerase V Is Required for Plant Immunity

  2011cited by this paper
• Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

  2011cited by this paper
• Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora

  2011cited by this paper
• MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.

  2011cited by this paper
• Post-transcriptional global regulation by CsrA in bacteria

  2010cited by this paper
• Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity1[W]

  2010cited by this paper
• How many ways are there to generate small RNAs?

  2010cited by this paper
• Bacteria-responsive microRNAs regulate plant innate immunity by modulating plant hormone networks

  2010cited by this paper
• Identification of four novel small non-coding RNAs from Xanthomonas campestris pathovar campestris

  2010cited by this paper
• Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi.

  2010cited by this paper
• Establishing, maintaining and modifying DNA methylation patterns in plants and animals

  2010cited by this paper
• Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway.

  2010cited by this paper
• Association of the genetic polymorphisms of the ACE gene and the eNOS gene with lupus nephropathy in northern Chinese population

  2010cited by this paper
• The Fate of miRNA* Strand through Evolutionary Analysis: Implication for Degradation As Merely Carrier Strand or Potential Regulatory Molecule?

  2010cited by this paper
• CRISPR/Cas, the Immune System of Bacteria and Archaea

  2010cited by this paper
• The genomic organization of plant pathogenicity in Fusarium species.

  2010cited by this paper
• Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

  2010cited by this paper
• Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1

  2010cited by this paper
• RNA interference pathways in filamentous fungi

  2010cited by this paper
• Small RNA Duplexes Function as Mobile Silencing Signals Between Plant Cells

  2010cited by this paper
• The role of Hfq in bacterial pathogens.

  2010cited by this paper
• Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi.

  2010cited by this paper
• HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal Pathogen Blumeria graminis[W][OA]

  2010cited by this paper
• RNA-based antiviral immunity

  2010cited by this paper
• Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

  2010cited by this paper
• Transcriptome Analysis of Pseudomonas syringae Identifies New Genes, Noncoding RNAs, and Antisense Activity

  2010cited by this paper
• Role of small RNAs in host-microbe interactions.

  2010cited by this paper
• Coevolution between a Family of Parasite Virulence Effectors and a Class of LINE-1 Retrotransposons

  2009cited by this paper

• The Role of Salicylic Acid in Activating Plant Stress Responses—Results of the Past Decade and Future Perspectives

  2025cites this paper
• The Promise of Environmental RNA Research Beyond mRNA

  2025cites this paper
• Cross kingdom RNA trafficking - A novel tool for plant disease management

  2025cites this paper
• Recent Advances and Emerging Applications of Small RNA Technologies in Plant Disease Resistance: A Narrative Review

  2025cites this paper
• Fungal Argonaute proteins act in bidirectional cross-kingdom RNA interference during plant infection

  2025cites this paper
• Trans-Kingdom sRNA Silencing in Sclerotinia sclerotiorum for Crop Fungal Disease Management

  2025cites this paper
• Transposon-Associated Small RNAs Involved in Plant Defense in Poplar

  2025cites this paper
• The regulation of auxin receptor gene CsAFB2 by csn‐miR393a confers resistance against Colletotrichum gloeosporioides in tea plants

  2025cites this paper
• FungiSNC: An integrated database for fungi small non-coding RNAs based on high-throughput sequencing.

  2025cites this paper
• Emerging roles of plant microRNAs during Colletotrichum spp. infection

  2024cites this paper
• The lncRNA20718-miR6022-RLPs module regulates tomato resistance to Phytophthora infestans

  2024cites this paper
• Rethinking Growth and Defense: miR472 as a Sensor and Regulator of Plant Immunity.

  2024cites this paper
• Epigenetic Regulation in Insect-Microbe Interactions.

  2024cites this paper
• The MdERF61-mdm-miR397b-MdLAC7b module regulates apple resistance to Fusarium solani via lignin biosynthesis

  2024cites this paper
• Novel Insight into the Prevention and Therapeutic Treatment of Paulownia Witches’ Broom: A Study on the Effect of Salicylic Acid on Disease Control and the Changes in the Paulownia Transcriptome and Proteome

  2024cites this paper
• R-Methylation in Plants: A Key Regulator of Plant Development and Response to the Environment

  2024cites this paper
• Alternative splicing regulation in plants by SP7-like effectors from symbiotic arbuscular mycorrhizal fungi

  2024influential citation
• Epigenetic weapons of plants against fungal pathogens

  2024cites this paper
• Host RNAi-mediated silencing of Fusarium oxysporum f. sp. lycopersici specific-fasciclin-like protein genes provides improved resistance to Fusarium wilt in Solanum lycopersicum

  2024cites this paper
• Small RNAs: Efficient and miraculous effectors that play key roles in plant–microbe interactions

  2023cites this paper
• Genome-wide profiling of rice DOUBLE-STRANDED RNA BINDING PROTEIN 1-associated RNAs by targeted RNA editing.

  2023cites this paper
• Botrytis cinerea small RNAs are associated with tomato AGO1 and silence tomato defense-related target genes supporting cross-kingdom RNAi

  2023cites this paper
• Cryo-EM structures of human SID-1 transmembrane family proteins and implications for their low-pH-dependent RNA transport activity

  2023cites this paper
• MicroRNA2871b of Dongxiang Wild Rice (Oryza rufipogon Griff.) Negatively Regulates Cold and Salt Stress Tolerance in Transgenic Rice Plants

  2023cites this paper
• Alternative splicing regulation in plants by effectors of symbiotic arbuscular mycorrhizal fungi

  2023cites this paper
• Tae-miR397 Negatively Regulates Wheat Resistance to Blumeria graminis

  2023cites this paper
• Small RNAs contribute to citrus Huanglongbing tolerance by manipulating methyl salicylate signaling and exogenous methyl salicylate primes citrus groves from emerging infection.

  2023cites this paper
• Extracellular RNAs released by plant-associated fungi: from fundamental mechanisms to biotechnological applications

  2023cites this paper
• Osa-miR162a Enhances the Resistance to the Brown Planthopper via α-Linolenic Acid Metabolism in Rice (Oryza sativa).

  2023cites this paper
• ZmAGO18b negatively regulates maize resistance against southern leaf blight

  2023cites this paper
• A fungal RNA-dependent RNA polymerase is a novel player in plant infection and cross-kingdom RNA interference

  2023cites this paper
• Cross-Kingdom Regulation of Plant-Derived miRNAs in Modulating Insect Development

  2023cites this paper
• The soil-borne white root rot pathogen Rosellinia necatrix expresses antimicrobial proteins during host colonization

  2023cites this paper
• Genome-Wide Identification of SWEET Genes in Cicer arietinum and Modulation of Its Expression in Endophytic Interactions with Serendipita indica

  2023cites this paper
• Molecular characterization reveals no functional evidence for naturally occurring cross‐kingdom RNA interference in the early stages of Botrytis cinerea–tomato interaction

  2022cites this paper
• Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants

  2022cites this paper
• Discovery of microRNA-like Small RNAs in Pathogenic Plant Fungus Verticillium nonalfalfae Using High-Throughput Sequencing and qPCR and RLM-RACE Validation

  2022cites this paper
• Botrytis cinerea small RNAs are associated with tomato AGO 1 and silence tomato target genes supporting cross-kingdom RNAi between the fungal pathogen B . cinerea and its tomato host

  2022cites this paper
• Fungal Secondary Metabolites and Small RNAs Enhance Pathogenicity during Plant-Fungal Pathogen Interactions

  2022cites this paper
• Lipids associated with plant-bacteria interaction identified using a metabolomics approach in an Arabidopsis thaliana model

  2022cites this paper
• Transposon-associated small RNAs involved in plant defense in poplar

  2021cites this paper
• Marchantia polymorpha model reveals conserved infection mechanisms in the 1 vascular wilt fungal pathogen Fusarium oxysporum 2 3

  2021cites this paper
• A CHIEVEMENTS IN H ORIZONTAL G ENE T RANSFER S TUDIES IN P ARASITIC P LANTS

  2021cites this paper
• miR395-regulated sulfate metabolism exploits pathogen sensitivity to sulfate to boost immunity in rice.

  2021cites this paper
• Expression Patterns of miR398, miR167, and miR159 in the Interaction between Bread Wheat (Triticum aestivum L.) and Pathogenic Fusarium culmorum and Beneficial Trichoderma Fungi

  2021cites this paper
• Decision letter for "Harnessing environmental‐RNAi to win an enduring battle: Plant versus pathogen"

  2021cites this paper
• miR169q and NUCLEAR FACTOR YA8 enhance salt tolerance by activating PEROXIDASE1 expression in response to ROS

  2021influential citation
• Crosstalk between Nutrient Signalling Pathways and Immune Responses in Rice

  2021cites this paper
• Roles of small RNAs in crop disease resistance

  2021cites this paper
• The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation

  2021cites this paper
• Laccase Directed Lignification Is One of the Major Processes Associated With the Defense Response Against Pythium ultimum Infection in Apple Roots

  2021cites this paper
• Arabidopsis Spliceosome Factor SmD3 Modulates Immunity to Pseudomonas syringae Infection

  2021cites this paper
• Application of Double-Strand RNAs Targeting Chitin Synthase, Glucan Synthase, and Protein Kinase Reduces Fusarium graminearum Spreading in Wheat

  2021cites this paper
• Message in a Bubble: Shuttling Small RNAs and Proteins Between Cells and Interacting Organisms Using Extracellular Vesicles.

  2021cites this paper
• Host-Induced Gene Silencing (HIGS): An Emerging Strategy for the Control of Fungal Plant Diseases

  2021cites this paper
• Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions

  2021cites this paper
• Surviving the odds: From perception to survival of fungal phytopathogens under host-generated oxidative burst

  2021cites this paper
• Impact of exogenous caffeine on regulatory networks of microRNAs in response to Colletotrichum gloeosporioides in tea plant

  2021cites this paper
• Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea

  2021cites this paper
• A novel Transposable element‐derived microRNA participates in plant immunity to rice blast disease

  2021cites this paper
• Threat at One End of the Plant: What Travels to Inform the Other Parts?

  2021cites this paper
• Marchantia polymorpha model reveals conserved infection mechanisms in the vascular wilt fungal pathogen Fusarium oxysporum

  2021cites this paper
• Potential Mechanisms Linking Food-Derived MicroRNAs, Gut Microbiota and Intestinal Barrier Functions in the Context of Nutrition and Human Health

  2021cites this paper
• Osa-miR162a balances rice yield and resistance to Magnaporthe oryzae

  2020cites this paper
• Fungal Diseases

  2020cites this paper
• Expression analysis of MicroRNAs and their target genes in Cucumis metuliferus infected by the root-knot nematode Meloidogyne incognita

  2020cites this paper
• Role of small RNA in plant interaction with microbes

  2020cites this paper
• Plant growth regulation by small RNA-mediated plant-biotic interactions

  2020cites this paper
• The stem rust fungus Puccinia graminis f . sp . tritici induces waves of small RNAs with opposing 1 profiles during wheat infection 2

  2020cites this paper
• The Multiple Facets of Plant–Fungal Interactions Revealed Through Plant and Fungal Secretomics

  2020cites this paper
• miR159 Represses a Constitutive Pathogen Defense Response in Tobacco1[OPEN]

  2020cites this paper
• Reprogramming and remodeling: transcriptional and epigenetic regulation of salicylic acid-mediated plant defense.

  2020cites this paper
• Small RNA in tolerating various biotic stresses

  2020cites this paper
• Transgenic Technology for Disease Resistance in Crop Plants

  2020cites this paper
• Computational Biology and Machine Learning Approaches to Study Mechanistic Microbiomehost Interactions

  2020cites this paper
• Application of small RNAs for plant protection

  2020cites this paper
• Characterization of microRNA-like RNAs associated with sclerotial development in Sclerotinia sclerotiorum.

  2020cites this paper
• Metabolomics, an Essential Tool in Exploring and Harnessing Microbial Chemical Ecology

  2020cites this paper
• Role of microRNAs in Plant–Fungus Interactions

  2020cites this paper
• Osa-miR162a fine-tunes rice resistance to Magnaporthe oryzae and Yield

  2020cites this paper
• Utilization of microRNAs and their regulatory functions for improving biotic stress tolerance in tea plant [Camellia sinensis (L.) O. Kuntze]

  2020cites this paper
• Comprehensive analysis of full genome sequence and Bd-milRNA/target mRNAs to discover the mechanism of hypovirulence in Botryosphaeria dothidea strains on pear infection with BdCV1 and BdPV1

  2019cites this paper
• Leaf rust (Puccinia triticina) mediated RNAi in wheat (Triticum aestivum L.) prompting host susceptibility

  2019cites this paper
• Dual regulation of Arabidopsis AGO2 by arginine methylation

  2019cites this paper
• In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant

  2019cites this paper
• Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice

  2019cites this paper
• A plant regeneration platform to apply new breeding techniques for improving disease resistance in grapevine rootstocks and cultivars

  2019cites this paper
• Recent advances in small RNA mediated plant-virus interactions

  2019cites this paper
• Expression of osa-miR7695 against the blast fungus Magnaporthe oryzae in Vietnamese rice cultivars

  2019cites this paper
• Symptomatic plant viroid infections in phytopathogenic fungi

  2019cites this paper
• Small RNA Functions as a Trafficking Effector in Plant Immunity

  2019cites this paper
• Nitric oxide shape plant-fungi interactions.

  2019cites this paper
• The emerging research field of extracellular RNA: an editorial preface

  2019cites this paper
• Mobile RNAs—the magical elf traveling between plant and the associated organisms

  2019cites this paper
• The effects of losing sex on the molecular evolution of plant defense

  2019cites this paper
• Small RNAs - Big Players in Plant-Microbe Interactions.

  2019cites this paper
• Trans-kingdom RNA interactions drive the evolutionary arms race between hosts and pathogens.

  2019cites this paper
• Identification of Regulatory Networks of MicroRNAs and Their Targets in Response to Colletotrichum gloeosporioides in Tea Plant (Camellia sinensis L.)

  2019cites this paper
• 1.Microarray Analysis Identifies Potential Genes Associated With Botrytis Cinerea and Hormonal Stresses.

  2019influential citation
• Switchgrass Rhizosphere Metabolite Chemistry Driven by Nitrogen Availability

  2019cites this paper