Plants with double genomes might have had a better chance to survive the Cretaceous–Tertiary extinction event

No abstract is available for this paper.

• Publication year

  2009

• Venue

  Proceedings of the National Academy of Sciences of the United States of America

• Publication date

  2009-04-07

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1073/pnas.0900906106PMID 19325131PMCID PMC2667025
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Origin and Early Evolution of Angiosperms

  2008cited by this paper
• Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years.

  2008cited by this paper
• Adaptive evolution in invasive species.

  2008cited by this paper
• i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles

  2008cited by this paper
• Genome Structure of the Legume, Lotus japonicus

  2008cited by this paper
• Synteny and Collinearity in Plant Genomes

  2008cited by this paper
• Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps.

  2008cited by this paper
• Changes to gene expression associated with hybrid speciation in plants: further insights from transcriptomic studies in Senecio

  2008cited by this paper
• Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

  2007cited by this paper
• Polyploidy: doubling up for evolutionary success.

  2007cited by this paper
• An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

  2007cited by this paper
• The evolutionary consequences of polyploidy.

  2007cited by this paper
• A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety

  2007cited by this paper
• Inferring speciation times under an episodic molecular clock.

  2007cited by this paper
• Mass extinction events and the plant fossil record.

  2007cited by this paper
• Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points.

  2007cited by this paper
• Hybridization and the colonization of novel habitats by annual sunflowers

  2007cited by this paper
• The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

  2007influential reference
• Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

  2007cited by this paper
• Expression partitioning between genes duplicated by polyploidy under abiotic stress and during organ development.

  2007cited by this paper
• PAML 4: phylogenetic analysis by maximum likelihood.

  2007cited by this paper
• Relaxed Phylogenetics and Dating with Confidence

  2006cited by this paper
• The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

  2006cited by this paper
• Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

  2006cited by this paper
• Widespread genome duplications throughout the history of flowering plants.

  2006cited by this paper
• A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers.

  2006cited by this paper
• Hybridization as a stimulus for the evolution of invasiveness in plants?

  2006cited by this paper
• Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. What is the role of genome duplication in the evolution of complexity and diversity?

  2006cited by this paper
• Polyploidy in invasive plant species of Singapore

  2006cited by this paper
• Erratum: Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes (Proceedings of the National Academy of Sciences of the United States of America (2006) 103 (14959-14964) DOI: 10.1073/pnas.0603228103)

  2006cited by this paper
• Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids

  2006cited by this paper
• Comparative genomics of Gossypium and Arabidopsis: unraveling the consequences of both ancient and recent polyploidy.

  2005cited by this paper
• Taxon sampling effects in molecular clock dating: an example from the African Restionaceae.

  2005cited by this paper
• Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

  2005cited by this paper
• Modeling gene and genome duplications in eukaryotes.

  2005cited by this paper
• Genome duplication and the origin of angiosperms.

  2005cited by this paper
• The advantages and disadvantages of being polyploid

  2005cited by this paper
• Novel patterns of gene expression in polyploid plants.

  2005cited by this paper
• EST data suggest that poplar is an ancient polyploid.

  2005cited by this paper
• THE AGE OF THE ANGIOSPERMS: A MOLECULAR TIMESCALE WITHOUT A CLOCK

  2005cited by this paper
• Dating the Monocot–Dicot Divergence and the Origin of Core Eudicots Using Whole Chloroplast Genomes

  2004cited by this paper
• Land plant extinction at the end of the Cretaceous: a quantitative analysis of the North Dakota megafloral record

  2004cited by this paper
• Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates.

  2004cited by this paper
• Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics.

  2004cited by this paper
• Understanding Apomixis: Recent Advances and Remaining Conundrums

  2004cited by this paper
• Mining EST databases to resolve evolutionary events in major crop species.

  2004cited by this paper
• Polyploidy in arctic plants

  2004cited by this paper
• Ferns diversified in the shadow of angiosperms

  2004cited by this paper
• Fungal Proliferation at the Cretaceous-Tertiary Boundary

  2004cited by this paper
• Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits.

  2004cited by this paper
• Duplication and divergence: the evolution of new genes and old ideas.

  2004cited by this paper
• Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes

  2004cited by this paper
• Major Ecological Transitions in Wild Sunflowers Facilitated by Hybridization

  2003cited by this paper
• A new British species, Senecio eboracensis (Asteraceae), another hybrid derivative of S. vulgaris L. and S. squalidus L.

  2003cited by this paper
• Advances in the study of polyploidy since Plant speciation

  2003cited by this paper
• Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

  2003cited by this paper
• FrameD: a flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences

  2003cited by this paper
• R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock

  2003cited by this paper
• A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.

  2003cited by this paper
• A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome.

  2003cited by this paper
• The hidden duplication past of Arabidopsis thaliana

  2002cited by this paper
• Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach.

  2002cited by this paper
• Divergence time and evolutionary rate estimation with multilocus data.

  2002cited by this paper
• Evolution of the angiosperms: calibrating the family tree

  2001cited by this paper
• Fossil evidence of water lilies (Nymphaeales) in the Early Cretaceous

  2001cited by this paper
• The earliest fossil evidence of the Hamamelidaceae: Late Cretaceous (Turonian) inflorescences and fruits of Altingioideae.

  2001cited by this paper
• Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

  2001cited by this paper
• Performance of a divergence time estimation method under a probabilistic model of rate evolution.

  2001cited by this paper
• Indication of Global Deforestation at the Cretaceous-Tertiary Boundary by New Zealand Fern Spike

  2001cited by this paper
• Sources of error and confidence intervals in estimating the age of angiosperms from rbcL and 18S rDNA data.

  2001cited by this paper
• Evolutionary analyses of the human genome

  2001cited by this paper
• The origins of genomic duplications in Arabidopsis.

  2000cited by this paper
• The evolutionary fate and consequences of duplicate genes.

  2000influential reference
• Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae).

  2000cited by this paper
• Polyploid incidence and evolution.

  2000cited by this paper
• Preservation of duplicate genes by complementary, degenerative mutations.

  1999cited by this paper
• DNA sequence evidence for the segmental allotetraploid origin of maize.

  1997cited by this paper
• PAML: a program package for phylogenetic analysis by maximum likelihood

  1997cited by this paper
• Phylogeny and substitution rates of angiosperm actin genes.

  1996cited by this paper
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

  1994cited by this paper
• The evolutionary dynamics of polyploid plants: origins, establishment and persistence.

  1992cited by this paper
• Polyploidy and Novelty in Flowering Plants

  1983cited by this paper
• Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

  year unknowncited by this paper

• Pulsed evolution shaped extant angiosperm pollen disparity

  2026cites this paper
• Recent allopolyploidization and transcriptomic asymmetry in the mangrove shrub Acanthus tetraploideus

  2025cites this paper
• Genome-enabled phosphorus acquisition strategy drives the rapid reproduction of water hyacinth (Pontederia crassipes) leading to global invasion

  2025cites this paper
• Photosynthetic Efficiency and Proteome Response of Diploid and Polyploid Arabidopsis thaliana After Heat or Salt Stress

  2025cites this paper
• Genomic and evolutionary evidence for drought adaptation of allopolyploid Brachypodium hybridum

  2025cites this paper
• The two sub-genomes of the allotetraploid frog Xenopus laevis are evolving under similar selective pressure in extant populations

  2025cites this paper
• Using reciprocally retained gene families to detect whole-genome multiplications in plants

  2025cites this paper
• A near‐gapless genome assembly of Pseudocydonia sinensis uncovers unique phenylpropanoid pathways

  2025cites this paper
• Ancient allopolyploidy and specific subgenomic evolution drove the radiation of poplars and willows

  2025cites this paper
• Stage-specific transcriptomic and DNA methylation responses to triploidy in European sea bass embryos and larvae

  2025cites this paper
• Which morphological traits can be used to reconstruct genome size in fossil plants? Assessing sporomorph size and stomatal guard cell length as paleo-genome size proxies

  2025cites this paper
• How much can reticulate evolution entangle plant systematics? Revisiting subfamilial classification of the Malvatheca clade (Malvaceae) on the basis of phylogenomics

  2025cites this paper
• Unraveling the Ancient Introgression History of Xanthoceras (Sapindaceae): Insights from Phylogenomic Analysis

  2025cites this paper
• Resolving phylogenetic conflicts in Pandanales: the dual roles of gene flow and whole-genome duplication

  2025cites this paper
• Study on chromosome doubling induction and ploidy identification in potato true seeds

  2025cites this paper
• Tribe Paniceae Cereals with Different Ploidy Levels: Setaria italica, Panicum miliaceum, and Echinochloa esculenta

  2025cites this paper
• Haplotype-Resolved Assembly in Polyploid Plants: Methods, Challenges, and Implications for Evolutionary and Breeding Research

  2025cites this paper
• Genome Architecture and Speciation in Plants and Animals

  2025cites this paper
• Regulation of transcriptional homeostasis by DNA methylation upon genome duplication in pak choi

  2025cites this paper
• Reticulate allopolyploidy and subsequent dysploidy drive evolution and diversification in the cotton family

  2025cites this paper
• LGRPv2: A high‐value platform for the advancement of Fabaceae genomics

  2025cites this paper
• Pollen Morphological Variations in Hybrids of Hibiscus rosasinensis L.: Implications for Palyno-taxonomy

  2025cites this paper
• The Rise of Polyploids During Environmental Upheaval

  2025cites this paper
• Genome assembly of Stewartia sinensis reveals origin and evolution of orphan genes in Theaceae

  2025cites this paper
• Cytotype distribution and chloroplast phylogeography of Enkianthus chinensis complex, a mixed-ploidy species complex in subtropical China and adjacent areas

  2025cites this paper
• PATHOGENESIS-RELATED PROTEINS: identification, evolution and functional analysis in pear (Pyrus bretschneideri)

  2025influential citation
• Whole genome duplication drives transcriptome reprogramming in response to drought in alfalfa

  2025cites this paper
• Chromosome organization: curiosity in diversity

  2024cites this paper
• Association of polyploidy with seed mass/germination in angiosperms: a review

  2024cites this paper
• Transcriptomics and Metabolomics Reveal Biosynthetic Pathways and Regulatory Mechanisms of Phenylpropanes in Different Ploidy of Capsicum frutescens

  2024cites this paper
• Local adaptation, recombination, and the fate of neopolyploids

  2024cites this paper
• Genome-Wide Analysis of the Common Fig (Ficus carica L.) R2R3-MYB Genes Reveals Their Structure, Evolution, and Roles in Fruit Color Variation

  2024cites this paper
• Comprehensive analysis of amino acid/auxin permease family genes reveal the positive role of GhAAAP128 in cotton tolerance to cold stress.

  2024cites this paper
• Polyploidy linked with species richness but not diversification rates or niche breadth in Australian Pomaderreae (Rhamnaceae)

  2024cites this paper
• Ancient large-scale gene duplications and diversification in bryophytes illuminate the plant terrestrialization.

  2024cites this paper
• Asymmetric genome merging leads to gene expression novelty through nucleo-cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

  2024cites this paper
• New beginnings for dead ends: polyploidy, -SSE models, and the dead-end hypothesis.

  2024cites this paper
• Understanding polyploid establishment: temporary persistence or stable coexistence?

  2024cites this paper
• PbRbohH/J mediates ROS generation to regulate the growth of pollen tube in pear.

  2024cites this paper
• An updated phylogeny and adaptive evolution within Amaranthaceae s.l. inferred from multiple phylogenomic datasets

  2024cites this paper
• Complex but Clear Allopolyploid Pattern of Subtribe Tussilagininae (Asteraceae: Senecioneae) Revealed by Robust Phylogenomic Evidence, with Development of a Novel Homeolog-Sorting Pipeline

  2024cites this paper
• Facing climate change: range dynamics and chromosome diversity in Hedeoma multiflora Benth., a South American aromatic-medicinal plant at risk

  2024cites this paper
• Genomic and evolutionary evidence for drought adaptation of grass allopolyploid Brachypodium hybridum

  2024cites this paper
• Ploidy and fruit trait variation of oil-tea Camellia: Implication for ploidy breeding1

  2024cites this paper
• Rosaceae phylogenomic studies provide insights into the evolution of new genes

  2024cites this paper
• Genome-wide analysis of the PME gene family reveals its role in suppressing fruit lignification in pear

  2024cites this paper
• Whole Genome Duplication Events Likely Contributed to the Aquatic Adaptive Evolution of Parkerioideae

  2024influential citation
• Asexual propagation could be an escape to sustain the constraints of inefficient gametic system in the evolving endemic species: evidence from meiotic anomalies encountered in Aponogeton bruggenii (Aponogetonaceae)

  2024cites this paper
• Convergent and/or parallel evolution of RNA-binding proteins in angiosperms after polyploidization.

  2024cites this paper
• Accurate Inference of the Polyploid Continuum Using Forward-Time Simulations

  2024cites this paper
• Identifying potential anthocyanin biosynthesis regulator in Chinese cherry by comprehensive genome-wide characterization of the R2R3-MYB transcription factor gene family

  2024influential citation
• Genome-Level Investigation of WRKY Transcription Factors and Their Potential Roles in Fruit Peel Ripening and Coloration in the Common Fig (Ficus carica L.)

  2023cites this paper
• Transcriptome-Wide Analysis of Core Transcription Factors Associated with Defense Responses in Autotetraploid versus Diploid Rice under Saline Stress and Recovery

  2023cites this paper
• Global transcriptome analysis of allopolyploidization reveals large-scale repression of the D-subgenome in synthetic hexaploid wheat

  2023cites this paper
• Induction of tetraploids in Paper Mulberry (Broussonetia papyrifera (L.) L’Hér. ex Vent.) by colchicine

  2023cites this paper
• Seed dormancy in Asteraceae: a global vegetation zone and taxonomic/phylogenetic assessment

  2023cites this paper
• Whole-genome and dispersed duplication, including transposed duplication, jointly advance the evolution of TLP genes in seven representative Poaceae lineages

  2023cites this paper
• Neopolyploidy increases stress tolerance and reduces fitness plasticity across multiple urban pollutants: support for the “general-purpose” genotype hypothesis

  2023cites this paper
• Polyploidy and diploidization in soybean

  2023cites this paper
• A Study of GUS Expression in Arabidopsis as a Tool for the Evaluation of Gene Evolution, Function and the Role of Expression Derived from Gene Duplication

  2023cites this paper
• The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

  2023cites this paper
• Effects of Allopolyploidization and Homoeologous Chromosomal Segment Exchange on Homoeolog Expression in a Synthetic Allotetraploid Wheat under Variable Environmental Conditions

  2023cites this paper
• Biocultural diversity and crop improvement

  2023cites this paper
• No phylogenetic evidence for angiosperm mass extinction at the Cretaceous–Palaeogene (K-Pg) boundary

  2023cites this paper
• Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor

  2023cites this paper
• Fewer chromosomes, more co-occurring species within plant lineages - a likely effect of local survival and colonization.

  2023cites this paper
• The effects of climate change on cytotype distributions of endemic genera in the North American Coastal Plain

  2023cites this paper
• Genome-wide identification and characterization of the PbrATG family in Pyrus bretschneideri and functional analysis of PbrATG1a in response to Botryosphaeria dothidea

  2023cites this paper
• Climate Change during Cretaceous/Paleogene as a Driving Force for the Evolutionary Radiation of Physical Dormancy in Fabaceae

  2023cites this paper
• PbrATL18, an E3 ubiquitin ligase identified by genome-wide identification, is a positive factor in pear resistance to drought and Colletotrichum fructicola infection

  2023cites this paper
• A high-quality chromosome-level Eutrema salsugineum genome, an extremophile plant model

  2023cites this paper
• Investigation of NLR Genes Reveals Divergent Evolution on NLRome in Diploid and Polyploid Species in Genus Trifolium

  2023cites this paper
• The duplication of genomes and gene regulatory networks and its potential for evolutionary adaptation and survival

  2023cites this paper
• No evidence for angiosperm mass extinction at the Cretaceous–Paleogene (K-Pg) boundary

  2023cites this paper
• Genome-wide characterization of Ficus carica MADS-box transcription factors with a focus on their roles during fruit development

  2023cites this paper
• Dynamics of mixed-ploidy populations under demographic and environmental stochasticities

  2023cites this paper
• Phylogenomics insights into gene evolution, rapid species diversification, and morphological innovation of the apple tribe (Maleae, Rosaceae).

  2023cites this paper
• The genome sequence and demographic history of Przewalskia tangutica (Solanaceae), an endangered alpine plant on the Qinghai–Tibet Plateau

  2023cites this paper
• Molecular early burst associated with the diversification of birds at the K–Pg boundary

  2023cites this paper
• Deep reticulation: the long legacy of hybridization in vascular plant evolution.

  2023cites this paper
• A metabolic perspective on polyploid invasion and the emergence of life histories: insights from a mechanistic model

  2023cites this paper
• Genome sequencing reveals the genetic architecture of heterostyly and domestication history of common buckwheat

  2023cites this paper
• Maternal dominance contributes to subgenome differentiation in allopolyploid fishes

  2023cites this paper
• Allotetraploidization event of Coptis chinensis shared by all Ranunculales

  2023cites this paper
• Development of homozygous tetraploid potato and whole genome doubling-induced the enrichment of H3K27ac and potentially enhanced resistance to cold-induced sweetening in tubers

  2023cites this paper
• Was the K/Pg boundary Classopollis ‘spike’ a singular event? A review of global palynological records suggests otherwise, with potentially broad implications

  2022cites this paper
• No Consistent Shift in Leaf Dry Mass per Area Across the Cretaceous—Paleogene Boundary

  2022cites this paper
• Integrated Analysis of Hi-C and RNA-Seq Reveals the Molecular Mechanism of Autopolyploid Growth Advantages in Pak Choi (Brassica rapa ssp. chinensis)

  2022cites this paper
• Phylogenomic Analysis Reconstructed the Order Matoniales from Paleopolyploidy Veil

  2022cites this paper
• Extensive lineage-specific rediploidisation masks shared whole genome duplication in the sturgeon-paddlefish ancestor

  2022cites this paper
• Evolution of an intermediate C4 photosynthesis in the non-foliar tissues of the Poaceae

  2022cites this paper
• Protein disorder reduced in Saccharomyces cerevisiae to survive heat shock [version 1; peer review: 2 approved, 1 approved with reservations]

  2022cites this paper
• Parental legacy versus regulatory innovation in salt stress responsiveness of allopolyploid cotton (Gossypium) species

  2022cites this paper
• A chromosome-level assembly of the “Cascade” hop (Humulus lupulus) genome uncovers signatures of molecular evolution and improves time of divergence estimates for the Cannabaceae family

  2022influential citation
• A Reappraisal of Polyploidy Events in Grasses (Poaceae) in a Rapidly Changing World

  2022cites this paper
• Comprehensive molecular evaluation of the histone methyltransferase gene family and their important roles in two-line hybrid wheat

  2022cites this paper
• Genome-wide identification and comparative analysis of the PYL gene family in eight Rosaceae species and expression analysis of seeds germination in pear

  2022cites this paper
• Subgenome dominance and its evolutionary implications in crop domestication and breeding

  2022cites this paper
• A Tracing Model for the Evolutionary Equilibrium of Octoploids

  2022cites this paper
• The genome of the king protea, Protea cynaroides

  2022cites this paper