Microbial community assembly and metabolic function during mammalian corpse decomposition

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Science

• Publication date

  2016-01-08

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1126/science.aad2646PMID 26657285
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Carcass mass has little influence on the structure of gravesoil microbial communities

  2015cited by this paper
• Initial insights into bacterial succession during human decomposition

  2015cited by this paper
• Seasonal variation of postmortem microbial communities

  2015cited by this paper
• Life in a World without Microbes

  2014cited by this paper
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

  2014cited by this paper
• Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

  2013cited by this paper
• The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing

  2013cited by this paper
• Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

  2013cited by this paper
• A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system

  2013cited by this paper
• The role of carrion in maintaining biodiversity and ecological processes in terrestrial ecosystems

  2013cited by this paper
• Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks

  2013cited by this paper
• Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

  2012cited by this paper
• Global biogeography of highly diverse protistan communities in soil

  2012cited by this paper
• Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

  2010cited by this paper
• QIIME allows analysis of high-throughput community sequencing data

  2010cited by this paper
• Carrion decomposition and nutrient cycling in a semiarid shrub–steppe ecosystem

  2009cited by this paper
• Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

  2009cited by this paper
• PyNAST: a flexible tool for aligning sequences to a template alignment

  2009cited by this paper
• Functional metagenomic profiling of nine biomes

  2008cited by this paper
• Multiple nutrients limit litterfall and decomposition in a tropical forest.

  2007cited by this paper
• SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

  2007cited by this paper
• Best practice in forensic entomology—standards and guidelines

  2007cited by this paper
• Cadaver decomposition in terrestrial ecosystems

  2006cited by this paper
• Computational Inference of Neural Information Flow Networks

  2006cited by this paper
• Detritus, trophic dynamics and biodiversity

  2004cited by this paper
• Decomposition in Terrestrial Ecosystems

  1979cited by this paper
• The Chemistry of Death

  1964cited by this paper

• Forensic microbiome research: the critical gap between proof of concept and proof of utility.

  2026cites this paper
• Beyond a viral succession timeline: a phase-transition framework and re-analysis highlight hidden instability in the proposed “phage clock”

  2026cites this paper
• A histological approach to investigate the decay of gastropod internal organs

  2026cites this paper
• Development of real-time PCR and droplet digital PCR assays for the simultaneous quantification of bacterial and human mitochondrial DNA for forensic analysis.

  2026cites this paper
• Postmortem submersion interval prediction model based on the rat muscle microbiome

  2026cites this paper
• High-Resolution Microbial Fingerprinting for Forensic Individual Identification: A Proof-of-Concept Study Integrating 2bRAD-M and Hierarchical Attention Network

  2026cites this paper
• Dual-kingdom necrobiome succession extends postmortem interval estimation into skeletonization.

  2026cites this paper
• Network complexity and deterministic assembly: How plant residues reshape microbial communities for pathogen suppression in degraded soils

  2026cites this paper
• Divergent Successional Patterns of phoC- and phoD-Phosphate-Solubilizing Microbes During Plateau Mammal (Ochotona curzoniae) Carcass Decomposition

  2026cites this paper
• Unveiling the Forensic Potential of Oral and Nasal Microbiota in Post-Mortem Interval Estimation

  2025cites this paper
• A temporal-aware machine learning framework enables microbial community dynamics prediction with personalized precision

  2025cites this paper
• Bayesian networks for network inference in biology

  2025cites this paper
• Visual analysis of hotspots and evolutionary trends in the field of postmortem interval estimation.

  2025cites this paper
• Water quality as an indication of postmortem submersion interval (PMSI) for remains in small, isolated fresh water bodies

  2025cites this paper
• The forensic footprint: Elemental and microbial evidence in relocated remains

  2025cites this paper
• Microbiota signature of the lung as the promising bioindicator for drowning diagnosis and postmortem submersion interval estimation

  2025cites this paper
• Tanatomicrobioma e Inteligencia Artificial: la Microbiología Forense de Hoy

  2025cites this paper
• Re-evaluating forensic taphonomy experimental design: Relevance of non-human animal models vs. human donor bodies.

  2025cites this paper
• A comprehensive guideline for hybrid modeling of engineered microbial processes.

  2025cites this paper
• Dynamic succession and origin of gut microbiota during early-life in White King pigeon

  2025cites this paper
• Lasting Effects of Different Scaled Mass Mortality Events on Soil Microbial Communities

  2025cites this paper
• The Transmissibility of the Human Skin Virome: Potential Forensic Implications

  2025cites this paper
• Estimating Postmortem Interval of Buried Pig Carcasses by Integrating Microbial Succession Patterns with Machine Learning Algorithms

  2025cites this paper
• Current Understanding and Future Research Direction for Estimating the Postmortem Interval: A Systematic Review

  2025cites this paper
• MicroProphet: A Digital Twin Framework for Predicting Microbial Community Dynamics with Personalized Precision

  2025cites this paper
• Metagenomic insights into the assembly, function, and key taxa of bacterial community in full-scale pesticide wastewater treatment processes.

  2025cites this paper
• Small mammal activities structure fine-scale soil microbial communities and coordinate rodenticide effects in the typical steppes of China.

  2025cites this paper
• Microbial succession patterns for postmortem interval estimation in decomposed mouse cadavers: A comparative study of mechanical asphyxia and hemorrhagic shock

  2025cites this paper
• Skin microbiome and skin aging: emerging strategies for manipulation.

  2025cites this paper
• Temporal Dynamics of Bacterial Communities in Ectropis grisescens Following Cryogenic Mortality

  2025cites this paper
• Building Predictive Understanding of the Activated Sludge Microbiome by Bridging Microbial Growth Kinetics and Microbial Population Dynamics.

  2025cites this paper
• The role of artificial intelligence in medical microbiology education

  2025cites this paper
• The Functional and Structural Succession of Mesic‐Grassland Soil Microbiomes Beneath Decomposing Large Herbivore Carcasses

  2025cites this paper
• Advancing time-since-interval estimation for clandestine graves: a forensic ecogenomics perspective into burial and translocation timelines using massively parallel sequencing

  2025cites this paper
• Apex Scavenger Declines Have Cascading Effects on Soil Biogeochemistry and Ecosystem Processes

  2025cites this paper
• Viral community succession during cadaver decomposition and its potential for estimating postmortem intervals

  2025cites this paper
• Persistent human-associated microbial signatures in burial soils from the 17th and 18th century New York African burial ground

  2025cites this paper
• Exploring the diversity of culturable fungi on corpses for forensic applications

  2025cites this paper
• Construction of a succession model for the microbiome in water from submerged corpses based on single-molecule real-time sequencing.

  2025cites this paper
• Soil microbial gene expression over one year of human decomposition

  2025cites this paper
• Fact-finding with fungi: A scoping review on recent advancements in the role of fungi as evidence in forensic science

  2025cites this paper
• Virus communities are associated with the degradation of recalcitrant carbon during the corpse decay of plateau pika (Ochoton curzoniae)

  2025cites this paper
• Death as Rising Entropy: A Theory of Everything for Postmortem Interval Estimation

  2025cites this paper
• Postmortem microbiome dynamics: Review of forensic microbial clock.

  2025cites this paper
• Negative biodiversity-ecosystem function relationship in broad but not in narrow functions within pitcher plant microbial communities

  2025cites this paper
• A multi-level overview of the hair decomposition process

  2025cites this paper
• Characterization and Assembly Dynamics of the Microbiome Associated with Swine Anaerobic Lagoon Manure Treated with Biochar

  2025cites this paper
• 法医微生物组分析在组织来源推断中的应用进展

  2025cites this paper
• Progressively greater temperature sensitivity of organic carbon decomposition in subsoil relative to topsoil along a millennial chronosequence of paddy soils

  2025cites this paper
• The Role of Vulture (Accipitriformes) Cutaneous Microbiota in Infectious Disease Protection

  2025cites this paper
• Quantifying the relative contributions of bacterial and fungal communities to carcass decomposition using a quantitative microbiome profiling approach

  2025cites this paper
• Ketamine's Brain Spatial Distribution and Metabolic Effects in a Mouse Model of Anxiety: Insight into In Situ Mass Spectrometry Imaging and Metabolomics Methods.

  2025cites this paper
• The relationship between microbial community succession, decay, and anatomical character loss in non‐biomineralized animals

  2025cites this paper
• A preliminary study of insect, bacterial, and fungal communities associated with Sus scrofa carrion in a tropical rainforest

  2025cites this paper
• Lab-scale evaluation of on-farm methods to mitigate gaseous emissions from staged swine carcasses.

  2025cites this paper
• Organic fertilizer compost alters the microbial composition and network structure in strongly acidic soil

  2024cites this paper
• Complexity of human death: its physiological, transcriptomic, and microbiological implications

  2024cites this paper
• Deciphering the microbial signature of death: advances in post-mortem microbial analysis

  2024cites this paper
• Human Decomposition and Time Since Death: Persistent Challenges and Future Directions of Postmortem Interval Estimation in Forensic Anthropology

  2024cites this paper
• EMERGING METHODS OF HUMAN MICROBIOME ANALYSIS AND ITS FORENSIC APPLICATIONS: Reviews

  2024cites this paper
• The legacy effects of afforestation facilitate the maintenance of microbial C:N:P stoichiometric homeostasis amid land use change

  2024cites this paper
• The integration and implications of artificial intelligence in forensic science

  2024cites this paper
• Comparative soil bacterial metabarcoding after aboveground vs. subsurface decomposition of Mus musculus

  2024cites this paper
• Analysis of the Microbial Community on the Surface of Bloodstains Under Environmental Conditions of Jaipur Region

  2024cites this paper
• Potential postmortem microbial biomarkers of infant and younger children death investigation

  2024cites this paper
• Medico-Legal Applications of the Human Microbiome and Critical Issues Due to Environmental Transfer: A Review

  2024cites this paper
• Influence of Drugs and Toxins on Decomposition Dynamics: Forensic Implications

  2024cites this paper
• Temporal dynamics of the diazotrophic community during corpse decomposition

  2024cites this paper
• Microbial Decomposition and Soil Health: Mechanisms and Ecological Implications

  2024cites this paper
• Environmental predictors impact microbial-based postmortem interval (PMI) estimation models within human decomposition soils

  2024cites this paper
• Gut Microbiome Characterisation of Chrysomya megacephala: Isolation, Identification, Antibiotic Profiling, and Initial Documentation of Leclercia adecarboxylata from the Fly

  2024cites this paper
• DeepPhylo: Phylogeny‐Aware Microbial Embeddings Enhanced Predictive Accuracy in Human Microbiome Data Analysis

  2024cites this paper
• Seasonal mouse cadaver microbial study: rupture time and postmortem interval estimation model construction

  2024cites this paper
• Towards predicting the geographical origin of ancient samples with metagenomic data

  2024cites this paper
• Raman Spectroscopy Against Harmful Nitrogen‐Based Compounds in Cultural Heritage Materials

  2024cites this paper
• Virus communities rather than bacterial communities contribute more on nutrient pool in polluted aquatic environment.

  2024cites this paper
• Carbon, nitrogen, and phosphorus release characteristics and underlying mechanisms in fish manure from recirculating aquaculture systems under alternating aerobic-anaerobic conditions

  2024cites this paper
• Transient hypoxia drives soil microbial community dynamics and biogeochemistry during human decomposition

  2024influential citation
• From carrion to soil: microbial recycling of animal carcasses.

  2024cites this paper
• Carcass decay inhibits denitrification indirectly by regulating the microbiota and physicochemical properties in a model water system

  2024cites this paper
• Aquatic conditions & bacterial communities as drivers of the decomposition of submerged remains.

  2024cites this paper
• Forensic Microbiology: When, Where and How

  2024cites this paper
• Artificial intelligence in forensic medicine and related sciences - selected issues.

  2024cites this paper
• From flesh to bones: Multi‐omics approaches in forensic science

  2024cites this paper
• Microbial Dynamics and Pathogen Control During Fermentation of Distiller Grains: Effects of Fermentation Time on Feed Safety

  2024cites this paper
• Multimodal Approaches Based on Microbial Data for Accurate Postmortem Interval Estimation

  2024cites this paper
• The adoption of Industry 4.0 technologies by using the technology organizational environment framework: The mediating role to manufacturing performance in a developing country

  2024cites this paper
• Decomposition in an extreme cold environment and associated microbiome—prediction model implications for the postmortem interval estimation

  2024cites this paper
• Arthropod prey type drives decomposition rates and microbial community processes

  2024cites this paper
• TOXICOLOGICAL IMPLICATIONS OF DICHLORVOS ON THANATOMICROBIOME PROFILES AND ABUNDANCE FOR POST MORTEM INVESTIGATIONS

  2024cites this paper
• A preliminary study characterizing temporal changes in soil bacterial communities after dismembered bones were buried

  2024cites this paper
• Research progress on the application of 16S rRNA gene sequencing and machine learning in forensic microbiome individual identification

  2024cites this paper
• A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables

  2024influential citation
• Identification of skin bacterial profiles of early deceased bodies and the relation to post-mortem interval.

  2024cites this paper
• Artificial intelligence-driven microbiome data analysis for estimation of postmortem interval and crime location

  2024cites this paper
• The relationship between microbial community succession, decay, and anatomical character loss in non-biomineralised animals

  2024cites this paper
• Effects of calcium phosphate and phosphorus-dissolving bacteria on microbial structure and function during Torreya Grandis branch waste composting

  2024cites this paper
• Alterations in microbiome of COVID-19 patients and its impact on forensic investigations.

  2023cites this paper
• Temperature rise alters phosphorus pool in corpse polluted water by inhibiting organic phosphorus mineralization and phosphorus transports

  2023cites this paper
• Arthropods, nematodes, fungi, and bacteria associated with penguin carrion in Barton Peninsula, King George Island, Antarctica

  2023cites this paper