The Database of Ribosomal Cross links (DRC)

The Database of Ribosomal Cross-links (DRC) provides a complete collection of all the published data produced by cross-linking studies on the Escherichia coli ribosome, as well as on its components and functional ligands. The DRC currently includes data on 986 cross-links from >100 research papers, yielded by >40 different reagents. For each cross-link, information is given concerning its location in the ribosome, the chemical or photochemical reagent applied, a brief description of the method(s) used to locate the cross-link, and the literature reference. The DRC is freely available via the World Wide Web at: http://Ribosome.Genebee.MSU.SU/DRC/ or at http://WWW:MPIMG-Berlin-Dahlem.MPG.DE/[symbol: see text]baranov/DRC/

• Publication year

  1998

• Venue

  Nucleic Acids Res.

• Publication date

  1998-01-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1093/nar/26.1.187PMID 9399831PMCID PMC147229
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Ribosomes and translation.

  1997cited by this paper
• The structure of ribosomal RNA: a three-dimensional jigsaw puzzle.

  1995cited by this paper
• Structure, Function, and Genetics of Ribosomes

  1986cited by this paper
• 4 – The Translational Apparatus of Bacillus subtilis

  1982cited by this paper
• Ribosomes, structure, function, and genetics : [proceedings of the 9th Steenbock Symposium held at the University of Wisconsin--Madison, July 5-8, 1979]

  1980cited by this paper

• Characterization of Ribonucleoproteins by Cross-linking and Mass Spectrometry

  2008cites this paper
• Ribosomal Proteins in the Spotlight

  2005cites this paper
• Aleksei Alekseevich Bogdanov

  2005cites this paper
• Nucleosides and oligonucleotides containing 2'-reactive groups: synthesis and applications

  2004cites this paper
• Chalcomycin Biosynthesis Gene Cluster from Streptomyces bikiniensis: Novel Features of an Unusual Ketolide Produced through Expression of the chm Polyketide Synthase in Streptomyces fradiae

  2004cites this paper
• Escherichia coli mRNAs with strong Shine/Dalgarno sequences also contain 5' end sequences complementary to domain # 17 on the 16S ribosomal RNA.

  2004cites this paper
• Catalytic Properties of Mutant 23 S Ribosomes Resistant to Oxazolidinones*

  2003cites this paper
• Inability Of Agrobacterium Tumefaciens Ribosomes To Translate In Vivo Mrnas Containing Non-Shine-Dalgarno Translational Initiators

  2002cites this paper
• Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA.

  2002cites this paper
• Protein synthesis at atomic resolution: mechanistics of translation in the light of highly resolved structures for the ribosome.

  2002cites this paper
• Anatomy of Escherichia coli ribosome binding sites.

  2001cites this paper
• Structures of ketolides and macrolides determine their mode of interaction with the ribosomal target site.

  2001cites this paper
• The tylosin resistance gene tlrB of Streptomyces fradiae encodes a methyltransferase that targets G748 in 23S rRNA

  2000cites this paper
• [Dissociation of proteins from the 40S subunit of human ribosomes in a lithium chloride gradient].

  2000cites this paper
• The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.

  2000cites this paper
• Computational modeling of structural experimental data.

  2000cites this paper
• Dissociation of proteins from the human 40S ribosomal subunit in a lithium chloride gradient

  2000cites this paper
• Structure of Functionally Activated Small Ribosomal Subunit at 3.3 Å Resolution

  2000cites this paper
• Macrolide–ketolide inhibition of MLS‐resistant ribosomes is improved by alternative drug interaction with domain II of 23S rRNA

  2000cites this paper
• [28] Computational modeling of structural experimental data

  2000cites this paper
• Applying Photolabile Derivatives of Oligonucleotides To Probe the Peptidyltransferase Center

  2000cites this paper
• Modern Site-Directed Cross-Linking Approaches: Implication for Ribosome Structure and Functions

  2000cites this paper
• Enhancing activity of epsilon in Escherichia coli and Agrobacterium tumefaciens cells.

  2000cites this paper
• Enhancing Activity of ε in Escherichia coli and Agrobacterium tumefaciens Cells

  2000cites this paper
• A polylinker‐derived sequence, PL, highly increased translation efficiency in Escherichia coli

  1999cites this paper
• Computational Modeling of Structured Experimental Data

  1999cites this paper
• The macrolide–ketolide antibiotic binding site is formed by structures in domains II and V of 23S ribosomal RNA

  1999cites this paper
• The Database of Ribosomal Cross-links: an update

  1999cites this paper
• Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA.

  1998cites this paper
• Analysis of the conformation of the 3' major domain of Escherichia coli16S ribosomal RNA using site-directed photoaffinity crosslinking.

  1998cites this paper
• On-line Resources for RNA Science

  1997cites this paper