Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia

No abstract is available for this paper.

• Publication year

  2014

• Venue

  The ISME Journal

• Publication date

  2014-10-24

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1038/ismej.2014.179PMID 25343515PMCID PMC4817703
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

  2014cited by this paper
• Ribosomal Database Project: data and tools for high throughput rRNA analysis

  2013cited by this paper
• Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

  2013cited by this paper
• Diet rapidly and reproducibly alters the human gut microbiome

  2013cited by this paper
• Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool

  2013influential reference
• Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

  2013cited by this paper
• Butyrate-Producing Bacteria, Including Mucin Degraders, from the Swine Intestinal Tract

  2013cited by this paper
• A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community

  2013cited by this paper
• FunGene: the functional gene pipeline and repository

  2013influential reference
• A framework for human microbiome research

  2012cited by this paper
• High Nutrient Transport and Cycling Potential Revealed in the Microbial Metagenome of Australian Sea Lion (Neophoca cinerea) Faeces

  2012cited by this paper
• Host-Gut Microbiota Metabolic Interactions

  2012cited by this paper
• Gene-centric metagenomics analysis of feline intestinal microbiome using 454 junior pyrosequencing

  2012cited by this paper
• Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering

  2011cited by this paper
• Evidence of cellulose metabolism by the giant panda gut microbiome

  2011cited by this paper
• Butyrate production in phylogenetically diverse Firmicutes isolated from the chicken caecum

  2011cited by this paper
• Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

  2011influential reference
• Bacterial populations and metabolites in the feces of free roaming and captive grizzly bears.

  2009cited by this paper
• Clostridium difficile--more difficult than ever.

  2008cited by this paper
• Evolution of Mammals and Their Gut Microbes

  2008influential reference
• Review article: the role of butyrate on colonic function

  2007cited by this paper
• Contribution of acetate to butyrate formation by human faecal bacteria.

  2004cited by this paper
• Restricted Distribution of the Butyrate Kinase Pathway among Butyrate-Producing Bacteria from the Human Colon

  2004cited by this paper
• Complete genome sequence of Clostridium perfringens, an anaerobic flesh-eater

  2002cited by this paper
• Fermentation of 4-aminobutyrate by Clostridium aminobutyricum: cloning of two genes involved in the formation and dehydration of 4-hydroxybutyryl-CoA

  2000cited by this paper
• Contributions of microbes in vertebrate gastrointestinal tract to production and conservation of nutrients.

  1998influential reference
• The central metabolic pathway from acetyl-CoA to butyryl-CoA in Clostridium acetobutylicum

  1995cited by this paper
• In vitro fermentation of cellulose, beet pulp, citrus pulp, and citrus pectin using fecal inoculum from cats, dogs, horses, humans, and pigs and ruminal fluid from cattle.

  1995cited by this paper
• Acetate metabolism by Escherichia coli in high-cell-density fermentation

  1994cited by this paper
• Molecular genetics and pathogenesis of Clostridium perfringens

  1991cited by this paper
• Growth of Clostridium difficile and production of toxins A and B in complex and defined media.

  1986cited by this paper
• Pathway of lysine degradation in Fusobacterium nucleatum

  1982cited by this paper
• Utilization of bamboo by the giant panda.

  1982cited by this paper
• Two Pathways of Glutamate Fermentation by Anaerobic Bacteria

  1974cited by this paper

• How Host Phylogeny and Diet Shape the Specificity and Specificity Diversity of Animal Gut Microbiomes

  2026cites this paper
• Industrial properties of SCFA-producers in herbivorous vertebrate targeted toward optimized PHA biosynthesis for sustainable bioplastic production: a review

  2026cites this paper
• Comparison of the red fox gut microbiota among different habitat types in southern Anatolia

  2025cites this paper
• Non-negligible role of gut morphology in shaping mammalian gut microbiomes

  2025cites this paper
• Exploring fecal microbial activity in zoo felids of varying body mass on a similar diet

  2025cites this paper
• Impact of an abrupt change from dry to canned diet on digestive function and gut microbiota in dogs.

  2025cites this paper
• Comparative insights into gut microbiota, diet, and inflammation in Inflammatory Bowel Diseases and canine enteropathy

  2025cites this paper
• Gut Microbiomes of Ex Situ African Painted Dogs (Lycaon pictus) Reflect Social Group and Variation in Dietary Whole Prey.

  2025cites this paper
• A Preliminary Investigation of the Gastrointestinal Bacterial Microbiomes of Barred Owls (Strix varia) Admitted to a Wildlife Hospital

  2025cites this paper
• Shaping the human gut microbiota: The role of canine companionship, lifestyle choices, and Blastocystis sp.

  2025cites this paper
• Fermented foods affect the seasonal stability of gut bacteria in an Indian rural population

  2025cites this paper
• Current Evidence on Raw Meat Diets in Pets: A Natural Symbol, but a Nutritional Controversy

  2025cites this paper
• Effects and Microbiota Changes Following Oral Lyophilized Fecal Microbiota Transplantation Capsules in Canine with Chronic Enteropathy After Parvovirus Infection: Case Report

  2025cites this paper
• Exploiting the interactions between plant proteins and gut microbiota to promote intestinal health

  2024cites this paper
• Fecal microbiota transplants facilitate post-antibiotic recovery of gut microbiota in cheetahs (Acinonyx jubatus)

  2024cites this paper
• Development and evaluation of an ensemble model to identify host-related metadata from fecal microbiota of zoo-housed mammals

  2024cites this paper
• Critical complex network structures in animal gastrointestinal tract microbiomes

  2024cites this paper
• Comparative Analysis of Gut Microbiomes in Laboratory Chinchillas, Ferrets, and Marmots: Implications for Pathogen Infection Research

  2024cites this paper
• Functional responses of giant panda gut microbiota to high-fiber diets

  2024cites this paper
• Canine Mucosal Artificial Colon: development of a new colonic in vitro model adapted to dog sizes

  2024cites this paper
• Novel primers to identify a wider diversity of butyrate-producing bacteria

  2024cites this paper
• Global meta‐analysis reveals the drivers of gut microbiome variation across vertebrates

  2024cites this paper
• Effects of Different Processed Diets on Growth Performance, Blood Parameters, Hair Quality and Fecal Microbiota in Ragdoll Cats

  2024cites this paper
• Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores

  2024cites this paper
• Modulating butyric acid-producing bacterial community abundance and structure in the intestine of immunocompromised mice with neutral polysaccharides extracted from Codonopsis pilosula.

  2024cites this paper
• Diet-induced changes in fecal microbiota composition and diversity in dogs (Canis lupus familiaris): A comparative study of BARF-type and commercial diets.

  2023cites this paper
• Fecal Metagenomics Study Reveals That a Low-Fiber Diet Drives the Migration of Wild Asian Elephants in Xishuangbanna, China

  2023cites this paper
• Fecal Metabolomics Reveals the Foraging Strategies of Giant Pandas for Different Parts of Bamboo

  2023cites this paper
• The Intestinal Microbiome in Dogs with Chronic Enteropathies and Cobalamin Deficiency or Normocobalaminemia—A Comparative Study

  2023cites this paper
• How important is food structure when cats eat mice?

  2023cites this paper
• Time series cluster analysis reveals individual assignment of microbiota in captive tiger (Panthera tigris) and wildebeest (Connochaetes taurinus)

  2023cites this paper
• Microbiome-host phylogeny relationships in animal gastrointestinal tract microbiomes.

  2022cites this paper
• Dietary fat promotes antibiotic-induced Clostridioides difficile mortality in mice

  2022cites this paper
• 16S rRNA gene sequence diversity in Faecalibacterium prausnitzii-complex taxa has marked impacts on quantitative analysis.

  2022cites this paper
• Differences in the composition and predicted functions of the intestinal microbiome of obese and normal weight adult dogs

  2022cites this paper
• Natural Bioactive Compounds Targeting Histone Deacetylases in Human Cancers: Recent Updates

  2022cites this paper
• Dietary fat promotes antibiotic-induced Clostridioides difficile mortality in mice

  2022cites this paper
• Analysis of Scat for Gut Microbiome Identification in Wolves from a Mediterranean and an Alpine Area

  2022cites this paper
• High levels of dietary digestible protein transiently promote beneficial bacteria in adult dog feces

  2022cites this paper
• Effects of dietary supplement with a Chinese herbal mixture on growth performance, antioxidant capacity, and gut microbiota in weaned pigs

  2022cites this paper
• A comprehensive analysis of gut and skin microbiota in canine atopic dermatitis in Shiba Inu dogs

  2022cites this paper
• Gut Microbiota Composition and Metabolic Potential of Long-Living People in China

  2022cites this paper
• Fecal microbiome of horses transitioning between warm-season and cool-season grass pasture within integrated rotational grazing systems

  2022cites this paper
• Any Future for Faecal Microbiota Transplantation as a Novel Strategy for Gut Microbiota Modulation in Human and Veterinary Medicine?

  2022cites this paper
• Social environment and genetics underlie body site‐specific microbiomes of Yellowstone National Park gray wolves (Canis lupus)

  2021cites this paper
• Dietary Pterostilbene and Resveratrol Modulate the Gut Microbiota Influenced by Circadian Rhythm Dysregulation.

  2021cites this paper
• Host habitat is the major determinant of the gut microbiome of fish

  2021cites this paper
• The effects of raw-meat diets on the gastrointestinal microbiota of the cat and dog: a review

  2021cites this paper
• Evidence of MHC class I and II influencing viral and helminth infection via the microbiome in a non-human primate

  2021cites this paper
• Characterization of fructooligosaccharide metabolism and fructooligosaccharide-degrading enzymes in human commensal butyrate producers

  2021cites this paper
• Gut Microbial Signature of Hepatocellular Cancer in Men With Cirrhosis

  2021cites this paper
• The Gut Microbiome of Dogs and Cats, and the Influence of Diet.

  2021cites this paper
• Unraveling the Gut Microbiome of the Invasive Small Indian Mongoose (Urva auropunctata) in the Caribbean

  2021cites this paper
• The gut microbiome in subclinical atherosclerosis: a population-based multi-phenotype analysis.

  2021cites this paper
• Habitat Elevation Shapes Microbial Community Composition and Alter the Metabolic Functions in Wild Sable (Martes zibellina) Guts

  2021cites this paper
• Social environment and genetics underlie body site- specific microbiomes of Yellowstone National Park gray wolves ( Canis

  2021cites this paper
• Understanding the Holobiont: Crosstalk Between Gut Microbiota and Mitochondria During Long Exercise in Horse

  2021cites this paper
• Faecal Microbiome Transplantation as a Solution to Chronic Enteropathies in Dogs: A Case Study of Beneficial Microbial Evolution

  2021cites this paper
• Unraveling differences in fecal microbiota stability in mammals: from high variable carnivores and consistently stable herbivores

  2021cites this paper
• The Fecal Microbiota of Dogs Switching to a Raw Diet Only Partially Converges to That of Wolves

  2021cites this paper
• Short-term supplementation of celecoxib-shifted butyrate production on a simulated model of the gut microbial ecosystem and ameliorated in vitro inflammation

  2020cites this paper
• The Comprehension of Composition, Diversity, Related Diseases, and Treatment of the Gut Microbiome in Companion Dogs: Friend or Foe?

  2020cites this paper
• Potential TMA-Producing Bacteria Are Ubiquitously Found in Mammalia

  2020influential citation
• The Role of the Canine Gut Microbiome and Metabolome in Health and Gastrointestinal Disease

  2020cites this paper
• Diet and Gut Microbes Act Coordinately to Enhance Programmed Cell Death and Reduce Colorectal Cancer Risk

  2020cites this paper
• Gut Microbial Protein Expression in Response to Dietary Patterns in a Controlled Feeding Study: A Metaproteomic Approach

  2020cites this paper
• Dynamic balancing of intestinal short-chain fatty acids: The crucial role of bacterial metabolism

  2020cites this paper
• Effects of metronidazole on the fecal microbiome and metabolome in healthy dogs

  2020cites this paper
• Catching a glimpse of the bacterial gut community of companion animals: a canine and feline perspective

  2020cites this paper
• The effect of combined carprofen and omeprazole administration on gastrointestinal permeability and inflammation in dogs

  2020cites this paper
• Deciphering the impact of diet and host physiology on the mammalian gut microbiome by multi-omics approaches.

  2020cites this paper
• Effects of High-Fat Diet at Two Energetic Levels on Fecal Microbiota, Colonic Barrier, and Metabolic Parameters in Dogs

  2020cites this paper
• Characterisation of gut microbiota of obesity and type 2 diabetes in a rodent model

  2020cites this paper
• Multi-omics Approaches To Decipher the Impact of Diet and Host Physiology on the Mammalian Gut Microbiome

  2020cites this paper
• Short term supplementation of celecoxib shifted butyrate production on a simulated model of the gut microbial ecosystem and ameliorated in vitro inflammation

  2019cites this paper
• Comparative analysis of the gut microbiota in centenarians and young adults shows a common signature across genotypically non-related populations.

  2019cites this paper
• Profiling the Clostridia with butyrate-producing potential in the mud of Chinese liquor fermentation cellar.

  2019cites this paper
• Zooming in on Butyrate-Producing Clostridial Consortia in the Fermented Grains of Baijiu via Gene Sequence-Guided Microbial Isolation

  2019cites this paper
• Oxidative Stress in Microbial Diseases

  2019cites this paper
• Habitual animal fat consumption in shaping gut microbiota and microbial metabolites.

  2019cites this paper
• Role of Gut Microbiota in Combating Oxidative Stress

  2019cites this paper
• California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

  2019cites this paper
• Dietary fat and fiber impacts intestinal microbiome resilience to antibiotics and Clostridoides difficile infection in mice

  2019cites this paper
• Comparison of the fecal bacterial microbiota composition between wild and captive bolson tortoises (Gopherus flavomarginatus)

  2019cites this paper
• Correction: California condor microbiomes: Bacterial variety and functional properties in captive-bred individuals

  2019cites this paper
• Construction of a model culture system of human colonic microbiota to detect decreased Lachnospiraceae abundance and butyrogenesis in the feces of ulcerative colitis patient.

  2019cites this paper
• Butyryl-CoA:acetate CoA-transferase gene associated with the genus Roseburia is decreased in the gut microbiota of Japanese patients with ulcerative colitis

  2019cites this paper
• Intestinal microbiota, red meat, and colorectal tumours in dogs

  2018cites this paper
• Detection of stable community structures within gut microbiota co-occurrence networks from different human populations

  2018cites this paper
• Colorectal Cancer and Metabolism

  2018cites this paper
• Metagenomic analysis of captive Amur tiger faecal microbiome

  2018cites this paper
• Physical inactivity related changes in human fecal microbiota

  2018cites this paper
• Modulation of Caecal Microbiome in Obese Mice Associated with Administration of Amaranth or Soybean Protein Isolates

  2018cites this paper
• MICROBIOME CHARACTERIZATION OF THE ESCAMOLERA ANTS UNVEILS MICROORGANISMS WITH HIGH BIOTECHNOLOGICAL POTENTIAL

  2018cites this paper
• Effects of Starch-Entrapped Microsphere Supplementation on Metabolic Phenotype in C57BL/6J Mice

  2018cites this paper
• Disruptions in gut microbial-host co-metabolism and the development of metabolic disorders.

  2018cites this paper
• Increased productivity in poultry birds by sub-lethal dose of antibiotics is arbitrated by selective enrichment of gut microbiota, particularly short-chain fatty acid producers.

  2018cites this paper
• Characterization of the β-defensin genes in giant panda

  2018cites this paper
• Absorption of Codonopsis pilosula Saponins by Coexisting Polysaccharides Alleviates Gut Microbial Dysbiosis with Dextran Sulfate Sodium-Induced Colitis in Model Mice

  2018cites this paper
• Bugs in "bears" : are mismatches between diets and gut microbial communities a bugbear for koalas (Phascolarctos cinereus)?

  2017cites this paper