Encoding, transmission, decoding, and specificity of calcium signals in plants

Review summarizing recent technological advances and computational frameworks for studying the specificity of calcium signaling in plant cells.

• Publication year

  2022

• Venue

  Journal of Experimental Botany

• Publication date

  2022-03-17

• Fields of study

  Biology, Medicine, Computer Science, Environmental Science

• Identifiers
  DOI 10.1093/jxb/erac105PMID 35298633PMCID 9162177
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• An updated suite of viral vectors for in vivo calcium imaging using intracerebral and retro-orbital injections in male mice

  2023cited by this paper
• Illuminating the hidden world of calcium ions in plants with a universe of indicators.

  2021cited by this paper
• Advances and prospects of rhodopsin-based optogenetics in plant research.

  2021cited by this paper
• Designs, applications, and limitations of genetically encoded fluorescent sensors to explore plant biology

  2021cited by this paper
• Electrical Signaling of Plants under Abiotic Stressors: Transmission of Stimulus-Specific Information

  2021cited by this paper
• Focus on biosensors: Looking through the lens of quantitative biology

  2021cited by this paper
• Interdependence of a mechanosensitive anion channel and glutamate receptors in distal wound signaling

  2021cited by this paper
• Calcium Signaling Mechanisms Across Kingdoms.

  2021influential reference
• Guard cell endomembrane Ca2+-ATPases underpin a ‘carbon memory’ of photosynthetic assimilation that impacts on water-use efficiency

  2021cited by this paper
• Simultaneous imaging of ER and cytosolic Ca2+ dynamics reveals long-distance ER Ca2+ waves in plants.

  2021cited by this paper
• Xanthomonas effector XopR hijacks host actin cytoskeleton via complex coacervation

  2021cited by this paper
• Integration of electric, calcium, reactive oxygen species and hydraulic signals during rapid systemic signaling in plants

  2021influential reference
• An updated suite of viral vectors for in vivo calcium imaging using local and retro-orbital injections

  2021influential reference
• Arabidopsis thaliana myosin XIK is recruited to the Golgi through interaction with a MyoB receptor

  2021cited by this paper
• Bounds on the Constrained Capacity for the Diffusive Poisson Molecular Channel With Memory

  2021cited by this paper
• The signatures of organellar calcium.

  2021cited by this paper
• Genetically Encoded Fluorescent Indicators for Imaging Brain Chemistry

  2021influential reference
• The Fast and The Furious: Rapid long-range signaling in plants.

  2021influential reference
• Phytochrome Signaling Networks.

  2021cited by this paper
• Optimizing Calcium Detection Methods in Animal Systems: A Sandbox for Synthetic Biology

  2021cited by this paper
• A Theoretical Analysis of Relations between Pressure Changes along Xylem Vessels and Propagation of Variation Potential in Higher Plants

  2021cited by this paper
• Membrane voltage as a dynamic platform for spatiotemporal signaling, physiological, and developmental regulation

  2021influential reference
• A voltage-dependent Ca2+ -homeostat operates in the plant vacuolar membrane.

  2021cited by this paper
• An optimized genetically encoded dual reporter for simultaneous ratio imaging of Ca2+ and H+ reveals new insights into ion signaling in plants

  2021cited by this paper
• Switching between Ultrafast Pathways Enables a Green-Red Emission Ratiometric Fluorescent-Protein-Based Ca2+ Biosensor

  2021cited by this paper
• Communication between the Plasma Membrane and Tonoplast Is an Emergent Property of Ion Transport1[OPEN]

  2020influential reference
• Editorial overview: Calcium signaling.

  2020cited by this paper
• Emerging roles of the CBL-CIPK calcium signaling network as key regulatory hub in plant nutrition.

  2020influential reference
• The transcriptional landscape of Arabidopsis thaliana pattern-triggered immunity

  2020cited by this paper
• Short and long-distance signaling in plant defense.

  2020cited by this paper
• Upper and Lower Bounds of Constrained Capacity in Diffusion-based Molecular Communication

  2020cited by this paper
• Genetically Encoded Calcium Indicators Can Impair Dendrite Growth of Cortical Neurons

  2020cited by this paper
• Integration of ROS and hormone signaling during abiotic stress.

  2020cited by this paper
• Calcium dynamics during trap closure visualized in transgenic Venus flytrap

  2020cited by this paper
• A Survey of Molecular Communication in Cell Biology: Establishing a New Hierarchy for Interdisciplinary Applications

  2020influential reference
• Cytoplasmic Calcium Buffering: An Integrative Crosstalk.

  2020cited by this paper
• The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity

  2020cited by this paper
• A Molecular Signal Integration Network Underpinning Arabidopsis Seed Germination

  2020cited by this paper
• Tonoplast-localized Ca2+ pumps regulate Ca2+ signals during pattern-triggered immunity in Arabidopsis thaliana

  2020cited by this paper
• Calcium spikes, waves and oscillations in plant development and biotic interactions

  2020influential reference
• Plant Sense: The Rise of Calcium Channels.

  2020influential reference
• Systemic signaling during abiotic stress combination in plants

  2020cited by this paper
• Wound- and mechano-stimulated electrical signals control hormone responses.

  2020influential reference
• The CBL-CIPK Calcium Signaling Network: Unified Paradigm from 20 Years of Discoveries.

  2020cited by this paper
• The Plasma Membrane—An Integrating Compartment for Mechano-Signaling

  2020cited by this paper
• Update on Receptors and Signaling

  2020cited by this paper
• How Plants Sense and Respond to Stressful Environments1[OPEN]

  2020cited by this paper
• Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big.

  2020cited by this paper
• Design Principle for Decoding Calcium Signals to Generate Specific Gene Expression Via Transcription1

  2019cited by this paper
• Long-distance electrical signals as a link between the local action of stressors and the systemic physiological responses in higher plants.

  2019cited by this paper
• An Information-Theoretical Approach for Calcium Signaling Specificity

  2019cited by this paper
• Regulation and Function of Mitochondria-Lysosome Membrane Contact Sites in Cellular Homeostasis.

  2019cited by this paper
• What Drives Symbiotic Calcium Signalling in Legumes? Insights and Challenges of Imaging

  2019cited by this paper
• Chloroplasts alter their morphology and accumulate at the pathogen interface during infection by Phytophthora infestans

  2019cited by this paper
• Live cell imaging of signaling and metabolic activities.

  2019cited by this paper
• Genetically Encoded Calcium Indicators: A New Tool in Renal Hypertension Research

  2019cited by this paper
• An Information Theoretic Framework to Analyze Molecular Communication Systems Based on Statistical Mechanics

  2019cited by this paper
• Fundamentals of Cellular Calcium Signaling: A Primer.

  2019influential reference
• Circularly Permuted Fluorescent Protein-Based Indicators: History, Principles, and Classification

  2019cited by this paper
• Nuclear calcium signatures are associated with root development

  2019cited by this paper
• A calmodulin-gated calcium channel links pathogen patterns to plant immunity

  2019influential reference
• Shear-Enhanced Dispersion of a Wound Substance as a Candidate Mechanism for Variation Potential Transmission

  2019cited by this paper
• Abscisic acid dynamics, signaling and functions in plants.

  2019cited by this paper
• Intercellular and systemic trafficking of RNAs in plants

  2018cited by this paper
• Plant organelle dynamics: cytoskeletal control and membrane contact sites.

  2018cited by this paper
• Calcium transport across plant membranes: mechanisms and functions.

  2018influential reference
• Calcium signaling: decoding mechanism of calcium signatures.

  2018cited by this paper
• Cellular Ca2+ Signals Generate Defined pH Signatures in Plants[OPEN]

  2018cited by this paper
• Predicting plant immunity gene expression by identifying the decoding mechanism of calcium signatures.

  2018cited by this paper
• The root-knot nematode effector MiPFN3 disrupts plant actin filaments and promotes parasitism

  2018cited by this paper
• The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors

  2018cited by this paper
• On the selectivity, specificity and signalling potential of the long-distance movement of messenger RNA.

  2018cited by this paper
• Estimating Information Exchange Performance of Engineered Cell-to-cell Molecular Communications: A Computational Approach

  2018cited by this paper
• The contribution of organelles to plant intracellular calcium signalling

  2018cited by this paper
• Integration between ROS Regulatory Systems and Other Signals in the Regulation of Various Types of Heat Responses in Plants

  2018cited by this paper
• Dual-flow-RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels.

  2018cited by this paper
• Systemic signaling in response to wounding and pathogens.

  2018cited by this paper
• Advances and current challenges in calcium signaling.

  2018influential reference
• A 340/380 nm light‐emitting diode illuminator for Fura‐2 AM ratiometric Ca2+ imaging of live cells with better than 5 nM precision

  2017cited by this paper
• A Unique "Integration" Strategy for the Rational Design of Optically Tunable Near-Infrared Fluorophores.

  2017cited by this paper
• Ratiometric Matryoshka biosensors from a nested cassette of green- and orange-emitting fluorescent proteins

  2017cited by this paper
• Multiparameter imaging of calcium and abscisic acid and high-resolution quantitative calcium measurements using R-GECO1-mTurquoise in Arabidopsis.

  2017cited by this paper
• The Membrane Transport System of the Guard Cell and Its Integration for Stomatal Dynamics1[CC-BY]

  2017cited by this paper
• Probes: FRET sensor design and optimization

  2017cited by this paper
• Chemical agents transported by xylem mass flow propagate variation potentials

  2017cited by this paper
• Orchestrating rapid long-distance signaling in plants with Ca2+ , ROS and electrical signals.

  2017cited by this paper
• Interplay of Plasma Membrane and Vacuolar Ion Channels, Together with BAK1, Elicits Rapid Cytosolic Calcium Elevations in Arabidopsis during Aphid Feeding[OPEN]

  2017cited by this paper
• Electrical signals in higher plants: Mechanisms of generation and propagation

  2016cited by this paper
• Electrical Wiring and Long-Distance Plant Communication.

  2016cited by this paper
• Nuclear pores enable sustained perinuclear calcium oscillations

  2016cited by this paper
• A ROS-Assisted Calcium Wave Dependent on the AtRBOHD NADPH Oxidase and TPC1 Cation Channel Propagates the Systemic Response to Salt Stress1[OPEN]

  2016influential reference
• Nuclear-localized cyclic nucleotide–gated channels mediate symbiotic calcium oscillations

  2016cited by this paper
• Genetically Encoded Fluorescent Indicators for Organellar Calcium Imaging.

  2016cited by this paper
• Design and development of genetically encoded fluorescent sensors to monitor intracellular chemical and physical parameters

  2016cited by this paper
• On the capacity of diffusion-based molecular timing channels

  2016cited by this paper
• Design and development of genetically encoded fluorescent sensors to monitor intracellular chemical and physical parameters

  2016cited by this paper
• Live Cell Imaging with R-GECO1 Sheds Light on flg22- and Chitin-Induced Transient [Ca(2+)]cyt Patterns in Arabidopsis.

  2015cited by this paper
• A comparison of fluorescent Ca²⁺ indicators for imaging local Ca²⁺ signals in cultured cells.

  2015cited by this paper
• Channel-facilitated diffusion boosted by particle binding at the channel entrance.

  2014cited by this paper
• Salt stress-induced Ca2+ waves are associated with rapid, long-distance root-to-shoot signaling in plants

  2014cited by this paper

• Uncertainty minimization and pattern recognition in Volvox carteri and V. aureus

  2025cites this paper
• Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

  2025cites this paper
• Local traveling waves of cytosolic Ca2+ elicited by defense signals or wounding are propagated by distinct mechanisms in Arabidopsis.

  2025cites this paper
• Stomatal signaling under drought: integrating hormonal pathways for crop resilience

  2025cites this paper
• Cold Stress‐Induced (Z)‐3‐Hexenol and Thymol Enhance Cold Tolerance of Tea Plants by Activating Ca2+ Signalling

  2025cites this paper
• CPK10 protein kinase regulates Arabidopsis tolerance to boron deficiency through phosphorylation and activation of BOR1 transporter.

  2024cites this paper
• Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long-standing interaction among land plants and fungi.

  2024cites this paper
• Modulation of the wheat transcriptome by TaZFP13D under well-watered and drought conditions

  2024cites this paper
• A dominant-negative Arabidopsis cation exchanger 1 (CAX1): N-terminal autoinhibition and membrane topology.

  2024cites this paper
• Identification of SikCDPK family genes to low-temperature by RNA-seq approaches and functional analysis of SikCDPK1 in Saussurea involucrata (Kar. & Kir.)

  2024cites this paper
• Crosstalk of methylglyoxal and calcium signaling in maize (Zea mays L.) thermotolerance through methylglyoxal-scavenging system.

  2024cites this paper
• L-histidine makes Ni2+ 'visible' for plant signalling systems: Shading the light on Ni2+-induced Ca2+ and redox signalling in plants.

  2024cites this paper
• Shared signals, different fates: Calcium and ROS in plant PRR and NLR immunity.

  2024cites this paper
• Calcium decoders and their targets: The holy alliance that regulate cellular responses in stress signaling.

  2023cites this paper
• Complex dynamics in an unexplored simple model of the peroxidase-oxidase reaction.

  2023cites this paper
• A dual-flow RootChip enables quantification of bi-directional calcium signaling in primary roots

  2023cites this paper
• Calcium oxalate crystals, the plant "gemstones": Insights into their synthesis and physiological implications in plants.

  2023cites this paper
• Genome-Wide Characterization of Calmodulin and Calmodulin-like Protein Gene Families in Paulownia fortunei and Identification of Their Potential Involvement in Paulownia Witches’ Broom

  2023cites this paper
• External application of brassinolide enhances cold resistance of tea plants (Camellia sinensis L.) by integrating calcium signals

  2023cites this paper
• Electrifying rhythms in plant cells.

  2022cites this paper
• Realizing Molecular Machine Learning Through Communications for Biological AI

  2022cites this paper
• Calcium Signaling in Plant-Insect Interactions

  2022cites this paper
• CIPK‐B is essential for salt stress signalling in Marchantia polymorpha

  2022cites this paper
• A Realizing Molecular Machine Learning Through Communications for Biological AI Future Directions and Challenges

  year unknowncites this paper