RIBOSOMAL RNA GENE DIVERSITY, EFFECTIVE POPULATION SIZE, AND EVOLUTIONARY LONGEVITY IN ASEXUAL GLOMEROMYCOTA

No abstract is available for this paper.

• Publication year

  2013

• Venue

  Evolution; international journal of organic evolution

• Publication date

  2013-01-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1111/j.1558-5646.2012.01747.xPMID 23289573
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Structural Bioinformatics

  2021cited by this paper
• Population genomics and local adaptation in wild isolates of a model microbial eukaryote

  2011cited by this paper
• Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage

  2011cited by this paper
• FITNESS RECOVERY AND COMPENSATORY EVOLUTION IN NATURAL MUTANT LINES OF C. ELEGANS

  2011cited by this paper
• Multinucleate Spores Contribute to Evolutionary Longevity of Asexual Glomeromycota

  2010influential reference
• Evidence for Pervasive Adaptive Protein Evolution in Wild Mice

  2010cited by this paper
• Clonality and recombination in the life history of an asexual arbuscular mycorrhizal fungus.

  2010cited by this paper
• DNA barcoding of arbuscular mycorrhizal fungi.

  2010influential reference
• Creating the CIPRES Science Gateway for inference of large phylogenetic trees

  2010cited by this paper
• Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size.

  2010cited by this paper
• Lack of global population genetic differentiation in the arbuscular mycorrhizal fungus Glomus mosseae suggests a recent range expansion which may have coincided with the spread of agriculture

  2009influential reference
• Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices.

  2009cited by this paper
• DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

  2009influential reference
• 'Glomus intraradices DAOM197198', a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices.

  2009cited by this paper
• Recombination in Glomus intraradices, a supposed ancient asexual arbuscular mycorrhizal fungus

  2009cited by this paper
• Effective population size and patterns of molecular evolution and variation

  2009cited by this paper
• Nucleotide Polymorphism and Within-Gene Recombination in Daphnia magna and D. pulex, Two Cyclical Parthenogens

  2009cited by this paper
• Regulation of rDNA stability by sumoylation.

  2009cited by this paper
• Acaulosporoid glomeromycotan spores with a germination shield from the 400-million-year-old Rhynie chert

  2009cited by this paper
• A rapid bootstrap algorithm for the RAxML Web servers.

  2008cited by this paper
• On the potential for extinction by Muller's Ratchet in Caenorhabditis elegans

  2008cited by this paper
• jModelTest: phylogenetic model averaging.

  2008influential reference
• Genetic structure of arbuscular mycorrhizal populations in fallow and cultivated soils.

  2008cited by this paper
• Replication fork arrest, recombination and the maintenance of ribosomal DNA stability.

  2008cited by this paper
• BMC Evolutionary Biology BioMed Central

  2007cited by this paper
• PAML 4: phylogenetic analysis by maximum likelihood.

  2007influential reference
• MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

  2007influential reference
• The Evolutionary Implications of an Asexual Lifestyle Manifested by Penicillium marneffei

  2007cited by this paper
• GARD: a genetic algorithm for recombination detection

  2006cited by this paper
• Incorporating information from length-mutational events into phylogenetic analysis.

  2006cited by this paper
• TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD

  2006cited by this paper
• Relaxed Phylogenetics and Dating with Confidence

  2006cited by this paper
• RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

  2006cited by this paper
• Nucleotide Polymorphism and Linkage Disequilibrium in Wild Populations of the Partial Selfer Caenorhabditis elegans

  2006cited by this paper
• Germination shields in Scutellospora (Glomeromycota: Diversisporales, Gigasporaceae) from the 400 million-year-old Rhynie chert

  2006cited by this paper
• Low gene copy number shows that arbuscular mycorrhizal fungi inherit genetically different nuclei

  2005cited by this paper
• Clonal diversity and population genetic structure of arbuscular mycorrhizal fungi (Glomus spp.) studied by multilocus genotyping of single spores

  2005cited by this paper
• SeqState: primer design and sequence statistics for phylogenetic DNA datasets.

  2005cited by this paper
• A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota.

  2005cited by this paper
• MUSCLE: a multiple sequence alignment method with reduced time and space complexity

  2004cited by this paper
• The two-locus ancestral graph in a subdivided population: convergence as the number of demes grows in the island model

  2004cited by this paper
• PyEvolve: a toolkit for statistical modelling of molecular evolution

  2004cited by this paper
• Organization of genetic variation in individuals of arbuscular mycorrhizal fungi

  2004cited by this paper
• Mfold web server for nucleic acid folding and hybridization prediction

  2003influential reference
• RAPID FITNESS RECOVERY IN MUTATIONALLY DEGRADED LINES OF CAENORHABDITIS ELEGANS

  2003cited by this paper
• R8s: Inferring Absolute Rates of Molecular Evolution, Divergence times in the Absence of a Molecular Clock

  2003cited by this paper
• Compensating for the meltdown: The critical effective size of a population with deleterious and compensatory mutations

  2003cited by this paper
• MrBayes 3: Bayesian phylogenetic inference under mixed models

  2003influential reference
• Estimation of nucleotide substitution rates in Eurotiomycete fungi.

  2002cited by this paper
• THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE

  2002cited by this paper
• Molecular Evidence for the Early Colonization of Land by Fungi and Plants

  2001cited by this paper
• High genetic diversity in arbuscular mycorrhizal fungi: evidence for recombination events

  2001cited by this paper
• MRBAYES: Bayesian inference of phylogenetic trees

  2001influential reference
• Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast.

  2001cited by this paper
• Mutation, Multilevel Selection, and the Evolution of Propagule Size during the Origin of Multicellularity

  2001cited by this paper
• Evidence for the evolution of multiple genomes in arbuscular mycorrhizal fungi

  2001cited by this paper
• Gaps as characters in sequence-based phylogenetic analyses.

  2000cited by this paper
• Evolution of gene families.

  2000cited by this paper
• LIAN 3.0: detecting linkage disequilibrium in multilocus data

  2000cited by this paper
• COMPENSATING FOR OUR LOAD OF MUTATIONS: FREEZING THE MELTDOWN OF SMALL POPULATIONS

  2000influential reference
• Glomalean fungi from the Ordovician.

  2000cited by this paper
• FIXATION OF NEW ALLELES AND THE EXTINCTION OF SMALL POPULATIONS: DRIFT LOAD, BENEFICIAL ALLELES, AND SEXUAL SELECTION

  2000cited by this paper
• Evolution by small steps and rugged landscapes in the RNA virus phi6.

  1999cited by this paper
• In vitro propagation and life cycle of the arbuscular mycorrhizal fungus Glomus etunicatum

  1999cited by this paper
• Deleterious mutations destabilize ribosomal RNA in endosymbiotic bacteria.

  1998influential reference
• The structure of the ITS2-proximal stem is required for pre-rRNA processing in yeast.

  1998influential reference
• Characterization of root colonization profiles by a microcosm community of arbuscular mycorrhizal fungi using 25S rDNA‐targeted nested PCR

  1998cited by this paper
• Rapid fixation of deleterious alleles can be caused by Muller's ratchet.

  1997cited by this paper
• Development of multiple genetic markers for studies of genetic variation in arbuscular mycorrhizal fungi using AFLP™

  1997cited by this paper
• Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23 S-like) ribosomal RNA.

  1996cited by this paper
• PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerases.

  1996cited by this paper
• An analysis of large rRNA sequences folded by a thermodynamic method.

  1996cited by this paper
• Evolutionarily conserved structural elements are critical for processing of Internal Transcribed Spacer 2 from Saccharomyces cerevisiae precursor ribosomal RNA.

  1995cited by this paper
• AN EXACT TEST FOR POPULATION DIFFERENTIATION

  1995cited by this paper
• A new method of inference of ancestral nucleotide and amino acid sequences.

  1995cited by this paper
• Properties of statistical tests of neutrality for DNA polymorphism data.

  1995cited by this paper
• Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

  1994cited by this paper
• Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding.

  1994cited by this paper
• A codon-based model of nucleotide substitution for protein-coding DNA sequences.

  1994influential reference
• Effective population size in organisms with complex life-histories.

  1993cited by this paper
• Mutation accumulation in finite outbreeding and inbreeding populations

  1993cited by this paper
• Statistical tests of neutrality of mutations.

  1993cited by this paper
• MULLER'S RATCHET AND MUTATIONAL MELTDOWNS

  1993cited by this paper
• How clonal are bacteria?

  1993cited by this paper
• Simple methods for testing the molecular evolutionary clock hypothesis.

  1993influential reference
• Population growth makes waves in the distribution of pairwise genetic differences.

  1992cited by this paper
• The architecture of the life cycle in small organisms

  1991cited by this paper
• Evidence for biased gene conversion in concerted evolution of ribosomal DNA.

  1991cited by this paper
• Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

  1991cited by this paper
• MUTATION LOAD AND THE SURVIVAL OF SMALL POPULATIONS

  1990cited by this paper
• Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics

  1990influential reference
• QUANTITATIVE VARIATION IN FINITE PARTHENOGENETIC POPULATIONS: WHAT STOPS MULLER'S RATCHET IN THE ABSENCE OF RECOMBINATION?

  1990cited by this paper
• Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

  1989influential reference
• The mutational load of a multigene family with uniform members.

  1989cited by this paper
• Linkage disequilibrium in human ribosomal genes: implications for multigene family evolution.

  1988cited by this paper
• Recombination and the immortality of the germ line

  1988cited by this paper
• Molecular Evolutionary Genetics

  1987influential reference
• Some probabilistic and statistical problems in the analysis of DNA sequences

  1986influential reference
• Interchromosomal biased gene conversion, mutation and selection in a multigene family.

  1986cited by this paper
• Mycorrhizal Symbiosis

  1986cited by this paper

• The pitfalls of rDNA‐based AMF identification: a comparative analysis of rDNA and protein‐coding genes

  2025cites this paper
• A genomic perspective on fungal diversity and evolution

  2025cites this paper
• Glomus mongioiense, a New Species of Arbuscular Mycorrhizal Fungi from Italian Alps and the Phylogeny-Spoiling Issue of Ribosomal Variants in the Glomus Genus

  2024cites this paper
• Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)

  2024cites this paper
• Purifying Selection and Persistent Polymorphism among Nuclei in the 1 Multinucleate Arbuscular Mycorrhizal (AM) Fungi

  2023cites this paper
• In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies

  2021cites this paper
• Mucoromycota: going to the roots of plant-interacting fungi

  2020cites this paper
• Celebrating INVAM: 35 years of the largest living culture collection of arbuscular mycorrhizal fungi

  2020cites this paper
• New method for the identification of arbuscular mycorrhizal fungi by proteomic-based biotyping of spores using MALDI-TOF-MS

  2017cites this paper
• Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota

  2017cites this paper
• Evidence of non-tandemly repeated rDNAs and their intragenomic heterogeneity in Rhizophagus irregularis

  2017cites this paper
• Étude de la biodiversité microbienne associée aux champignons mycorhiziens arbusculaires dans des sites hautement contaminés par des hydrocarbures pétroliers

  2017cites this paper
• Phylogenetically Structured Differences in rRNA Gene Sequence Variation among Species of Arbuscular Mycorrhizal Fungi and Their Implications for Sequence Clustering

  2016influential citation
• Uniting species- and community-oriented approaches to understand arbuscular mycorrhizal fungal diversity

  2016cites this paper
• Patrones de biomasa micorrízica arbuscular en ecosistemas de Venezuela y Cuba/ Patterns in arbuscular mycorrhizal biomass in Venezuelan and Cuban ecosystems

  2016cites this paper
• Molecular evolution patterns reveal life history features of mycoplasma‐related endobacteria associated with arbuscular mycorrhizal fungi

  2015cites this paper
• Status and molecular identification of arbuscular mycorrhizal (AM) fungi associated with Acacia spp. on rehabilitated gold and uranium mine tailings

  2015cites this paper
• Genome diversity in arbuscular mycorrhizal fungi.

  2015cites this paper
• A combination of morphology and 28S rRNA gene sequences provide grouping and ranking criteria to merge eight into three Ambispora species (Ambisporaceae, Glomeromycota)

  2015cites this paper
• Phylogenetic relationships among arbuscular mycorrhizal fungal species in the deeply rooted archaeosporales (Glomeromycota)

  2015influential citation
• Potential for Industrial Application of Microbes in Symbioses that Influence Plant Productivity and Sustainability in Agricultural, Natural, or Restored Ecosystems

  2014cites this paper
• DNA-based detection and identification of Glomeromycota: the virtual taxonomy of environmental sequences1

  2014cites this paper
• Genotyping an Emiliania huxleyi (prymnesiophyceae) bloom event in the North Sea reveals evidence of asexual reproduction

  2014cites this paper
• Genomics of Arbuscular Mycorrhizal Fungi: Out of the Shadows

  2014cites this paper
• The Largest Subunit of RNA Polymerase II as a New Marker Gene to Study Assemblages of Arbuscular Mycorrhizal Fungi in the Field

  2014cites this paper
• DNA-barcoding: A case study in the diatom genus Frustulia (Bacillariophyceae)

  2013cites this paper
• Rapid Mitochondrial Genome Evolution through Invasion of Mobile Elements in Two Closely Related Species of Arbuscular Mycorrhizal Fungi

  2013cites this paper
• Intra-Genomic Variation in the Ribosomal Repeats of Nematodes

  2013cites this paper
• An evidence-based consensus for the classification of arbuscular mycorrhizal fungi (Glomeromycota)

  2013cites this paper