Topology of the components of the DNA packaging machinery in the phage phi29 prohead.

No abstract is available for this paper.

• Publication year

  2000

• Venue

  Journal of Molecular Biology

• Publication date

  2000-05-19

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1006/JMBI.2000.3712PMID 10801350
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Selection of antibody probes to correlate protein sequence domains with their structural distribution

  2008cited by this paper
• Role of the Amino-terminal Domain of Bacteriophage # 29 Connector in DNA Binding and Packaging

  2001cited by this paper
• Virus assembly: Imaging a molecular machine.

  1999cited by this paper
• Domain architecture of the bacteriophage phi29 connector protein.

  1999cited by this paper
• Analysis of capsid portal protein and terminase functional domains: interaction sites required for DNA packaging in bacteriophage T4.

  1999cited by this paper
• The three-dimensional structure of a DNA translocating machine at 10 A resolution.

  1999cited by this paper
• 3D reconstruction of the ATP-bound form of CCT reveals the asymmetric folding conformation of a type II chaperonin

  1999cited by this paper
• 3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs).

  1998cited by this paper
• Bacteriophage DNA Packaging: RNA Gears in a DNA Transport Machine

  1998cited by this paper
• Assembly of a tailed bacterial virus and its genome release studied in three dimensions.

  1998cited by this paper
• Inter-RNA interaction of phage phi29 pRNA to form a hexameric complex for viral DNA transportation.

  1998cited by this paper
• Toroidal proteins: running rings around DNA.

  1998cited by this paper
• Function of hexameric RNA in packaging of bacteriophage phi 29 DNA in vitro.

  1998cited by this paper
• Crystallographic analysis reveals the 12-fold symmetry of the bacteriophage phi29 connector particle.

  1998cited by this paper
• Bacteriophage DNA packaging: RNA gears in a DNA transport machine.

  1998cited by this paper
• Structure of L-A Virus: A Specialized Compartment for the Transcription and Replication of Double-stranded RNA

  1997cited by this paper
• The bacteriophage φ29 head–tail connector imaged at high resolution with the atomic force microscope in buffer solution

  1997cited by this paper
• The interaction of DNA with bacteriophage phi 29 connector: a study by AFM and TEM.

  1996cited by this paper
• A variant to the “random approximation” of the reference-free alignment algorithm

  1996cited by this paper
• Pattern recognition and classification of images of biological macromolecules using artificial neural networks.

  1994cited by this paper
• Structure of viral connectors and their function in bacteriophage assembly and DNA packaging

  1994cited by this paper
• RNA‐mediated specificity of DNA packaging into hybrid lambda/phi 29 proheads.

  1993cited by this paper
• Isolation and characterization of a portal protein-DNA complex from dsDNA bacteriophage.

  1992cited by this paper
• DNA conformational change induced by the bacteriophage phi 29 connector.

  1992cited by this paper
• Supercoiled DNA wraps around the bacteriophage phi 29 head-tail connector.

  1992cited by this paper
• Role of the amino-terminal domain of bacteriophage phi 29 connector in DNA binding and packaging.

  1992cited by this paper
• RNA dependence of the bacteriophage φ29 DNA packaging ATPase

  1990cited by this paper
• Conformational changes in bacteriophage phi 29 connector prevents DNA-binding activity.

  1990cited by this paper
• RNA dependence of the bacteriophage phi 29 DNA packaging ATPase.

  1990cited by this paper
• DNA packaging in dsDNA bacteriophages.

  1989cited by this paper
• Control Mechanisms in dsDNA Bacteriophage Assembly

  1988cited by this paper
• A small viral RNA is required for in vitro packaging of bacteriophage phi 29 DNA.

  1987cited by this paper
• Three-dimensional reconstruction of the connector of bacteriophage phi 29 at 1.8 nm resolution.

  1986cited by this paper
• Initiation of phage phi 29 DNA replication in vitro: formation of a covalent complex between the terminal protein, p3, and 5'-dAMP.

  1982cited by this paper
• The correlation averaging of a regularly arranged bacterial cell envelope protein

  1982cited by this paper
• DNA packaging by the double-stranded DNA bacteriophages.

  1980cited by this paper

• Small viruses reveal bidirectional evolution between HK97-fold viruses and encapsulins via procapsids

  2025cites this paper
• Revolving hexameric ATPases as asymmetric motors to translocate double-stranded DNA genome along one strand

  2023influential citation
• Structural Insights into gp16 ATPase in the Bacteriophage ϕ29 DNA Packaging Motor.

  2021cites this paper
• Effects of Packaging History on the Ejection of a Polymer Chain from a Small Confinement

  2021cites this paper
• Optical tweezer and TIRF microscopy for single molecule manipulation of RNA/DNA nanostructures including their rubbery property and single molecule counting

  2021cites this paper
• An integrative structural model of the full-length gp16 ATPase in bacteriophage phi29 DNA packaging motor

  2020cites this paper
• Direct structural evidence supporting a revolving mechanism in DNA packaging motors

  2020cites this paper
• Development of Potent Antiviral Drugs Inspired by Viral Hexameric DNA-Packaging Motors with Revolving Mechanism

  2016cites this paper
• Prohead RNA: a noncoding viral RNA of novel structure and function

  2016cites this paper
• Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism

  2016cites this paper
• TOWARDS ELUCIDATION OF THE MECHANISM OF BIOLOGICAL NANOMOTORS

  2016cites this paper
• New approach to develop ultra-high inhibitory drug using the power function of the stoichiometry of the targeted nanomachine or biocomplex.

  2015cites this paper
• Single molecule photobleaching (SMPB) technology for counting of RNA, DNA, protein and other molecules in nanoparticles and biological complexes by TIRF instrumentation.

  2014cites this paper
• Application of Single-Molecule Fluorescence in RNA Biology

  2014cites this paper
• Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation.

  2014cites this paper
• Mechanism of One-Way Traffic of Hexameric Phi29 DNA Packaging Motor with Four Electropositive Relaying Layers Facilitating Antiparallel Revolution

  2013cites this paper
• Discovery of a new motion mechanism of biomotors similar to the earth revolving around the sun without rotation

  2013cites this paper
• Towards Elucidation of a Viral DNA Packaging Motor

  2013cites this paper
• The ATPase of the phi29 DNA packaging motor is a member of the hexameric AAA+ superfamily

  2013cites this paper
• Current advances in Phi29 pRNA biology and its application in drug delivery

  2012cites this paper
• Viral connectors for DNA encapsulation.

  2012cites this paper
• Direct measurement of phage phi29 stiffness provides evidence of internal pressure.

  2012cites this paper
• "Push through one-way valve" mechanism of viral DNA packaging.

  2012cites this paper
• Probing the impact of loading rate on the mechanical properties of viral nanoparticles.

  2012cites this paper
• Structure, Mechanical Properties, and Self-Assembly of Viral Capsids

  2011cites this paper
• Discrete fracture patterns of virus shells reveal mechanical building blocks

  2011cites this paper
• Structure and assembly of the essential RNA ring component of a viral DNA packaging motor

  2011cites this paper
• Built-in mechanical stress in viral shells.

  2011cites this paper
• Topology of viral DNA

  2010cites this paper
• VERSATILE DNA-PACKAGING NANOMOTOR OF BACTERIOPHAGE phi29 WITH APPLICATIONS IN NANOBIOTECHNOLOGY

  2010cites this paper
• Construction of Bacteriophage Phi29 DNA Packaging Motor and its Applications in Nanotechnology and Therapy

  2009cites this paper
• Modelling of a DNA packaging motor

  2009cites this paper
• Conformational changes in the connector protein complex of the bacteriophage φ29 DNA packaging motor

  2009cites this paper
• Novel mechanism of hexamer ring assembly in protein/RNA interactions revealed by single molecule imaging

  2008cites this paper
• Strand and nucleotide-dependent ATPase activity of gp16 of bacterial virus phi29 DNA packaging motor.

  2008influential citation
• Portal motor velocity and internal force resisting viral DNA packaging in bacteriophage phi29.

  2008cites this paper
• DNA packaging motor assembly intermediate of bacteriophage phi29.

  2008cites this paper
• The bacteriophage DNA packaging motor.

  2008cites this paper
• Mathematical approaches for stoichiometric quantification in studies of viral assembly and DNA packaging

  2008cites this paper
• Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor.

  2008cites this paper
• Viral nanomotors for packaging of dsDNA and dsRNA

  2007cites this paper
• Counting of six pRNAs of phi29 DNA‐packaging motor with customized single‐molecule dual‐view system

  2007cites this paper
• Instrumentation and metrology for single RNA counting in biological complexes or nanoparticles by a single-molecule dual-view system.

  2007cites this paper
• Grouping of ferritin and gold nanoparticles conjugated to pRNA of the phage phi29 DNA-packaging motor.

  2007cites this paper
• Analysis of intermolecular base pair formation of prohead RNA of the phage ø29 DNA packaging motor using NMR spectroscopy

  2007cites this paper
• Alanine scanning and Fe-BABE probing of the bacteriophage ø29 prohead RNA-connector interaction.

  2007cites this paper
• Interaction of gp 16 with pRNA and DNA for Genome Packaging by the Motor of Bacterial Virus phi 29

  2006cites this paper
• Affinity of molecular interactions in the bacteriophage φ29 DNA packaging motor

  2006influential citation
• The genome packaging machinery of dsDNA bacteriophage PRD1

  2006cites this paper
• Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29.

  2006cites this paper
• Seeking the Mechanism

  2005cites this paper
• The ø29 DNA Packaging Motor

  2005cites this paper
• Ionic, structural, and temperature effects on DNA nanoparticles formed by natural and synthetic polyamines.

  2005cites this paper
• RNA Multimerisation in the DNA Packaging Motor of Bacteriophage φ29

  2005cites this paper
• Translocation of nicked but not gapped DNA by the packaging motor of bacteriophage phi29.

  2005cites this paper
• Binding of pRNA to the N-terminal 14 amino acids of connector protein of bacteriophage phi29

  2005influential citation
• Maturation of phage T7 involves structural modification of both shell and inner core components

  2005cites this paper
• The procapsid binding domain of phi29 packaging RNA has a modular architecture and requires 2'-hydroxyl groups in packaging RNA interaction.

  2005cites this paper
• Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.

  2005cites this paper
• Bacteriophage capsids: tough nanoshells with complex elastic properties.

  2004cites this paper
• A simple mathematical formula for stoichiometry quantification of viral and nanobiological assemblage using slopes of log/log plot curves.

  2004cites this paper
• Quantification of the DNA Cleavage and Packaging Proteins UL15 and UL28 in A and B Capsids of Herpes Simplex Virus Type 1

  2004cites this paper
• Formation of DNA nanoparticles in the presence of novel polyamine analogues: a laser light scattering and atomic force microscopic study.

  2004cites this paper
• Bacillus subtilis Bacteriophage SPP1 DNA Packaging Motor Requires Terminase and Portal Proteins*

  2003cites this paper
• Models of bacteriophage DNA packaging motors.

  2003cites this paper
• Role of scaffolding protein in bacteriophage P22 morphogenesis

  2003cites this paper
• Use of PEG to acquire highly soluble DNA-packaging enzyme gp16 of bacterial virus phi29 for stoichiometry quantification.

  2003cites this paper
• Construction of phi29 DNA-packaging RNA monomers, dimers, and trimers with variable sizes and shapes as potential parts for nanodevices.

  2003cites this paper
• Bacteriophage phi 29 DNA packaging.

  2002cites this paper
• Bacteriophage φ29 DNA packaging

  2002cites this paper
• Implication of the prohead RNA in phage phi29 DNA packaging.

  2002cites this paper
• Structure and function of phi29 hexameric RNA that drives the viral DNA packaging motor: review.

  2002cites this paper
• Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle.

  2002cites this paper
• Role of lipid rafts in virus assembly and budding.

  2002cites this paper
• φ29 Family of Phages

  2001cites this paper
• The bacteriophage straight phi29 portal motor can package DNA against a large internal force.

  2001cites this paper
• Structural organisation of the head-to-tail interface of a bacterial virus.

  2001cites this paper
• Purification and functional characterization of p16, the ATPase of the bacteriophage Phi29 packaging machinery.

  2001influential citation
• Chemical modification patterns of active and inactive as well as procapsid-bound and unbound DNA-packaging RNAof bacterial virus Phi29.

  2001cites this paper
• Phi29 family of phages.

  2001cites this paper
• f29 Family of Phages

  2001influential citation
• Cryoelectron-microscopy image reconstruction of symmetry mismatches in bacteriophage phi29.

  2001cites this paper
• Supplemental data for : The Bacteriophage ø 29 Portal Motor can Package DNA Against a Large Internal Force

  2001cites this paper
• Structure of the bacteriophage f29 DNA packaging motor

  2000cites this paper
• Recent developments in cryo-electron microscopy reconstruction of single particles.

  2000cites this paper
• Allometric scaling of production and life-history variation in vascular plants

  1999cites this paper
• Structure of the bacteriophage f 29 DNA packaging motor

  year unknowncites this paper
• The Aquila Digital Community The Aquila Digital Community

  year unknowncites this paper
• dual-view system biological complexes or nanoparticles by a single-molecule Instrumentation and metrology for single RNA counting in

  year unknowncites this paper
• Structure of the bacteriophage f 29 DNA packaging motor

  year unknowncites this paper