Common mechanisms of DNA translocation motors in bacteria and viruses using one-way revolution mechanism without rotation.

No abstract is available for this paper.

• Publication year

  2014

• Venue

  Biotechnology Advances

• Publication date

  2014-07-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/j.biotechadv.2014.01.006PMID 24913057PMCID PMC4052234
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• The Hexameric Helicase DnaB Adopts a Nonplanar Conformation during Translocation

  2020cited by this paper
• Single pore translocation of folded, double-stranded, and tetra-stranded DNA through channel of bacteriophage phi29 DNA packaging motor.

  2015cited by this paper
• Genome Segregation and Packaging Machinery in Acanthamoeba polyphaga Mimivirus Is Reminiscent of Bacterial Apparatus

  2014cited by this paper
• Elastic properties and heterogeneous stiffness of the phi29 motor connector channel.

  2014cited by this paper
• Finding of widespread viral and bacterial revolution dsDNA translocation motors distinct from rotation motors by channel chirality and size

  2014cited by this paper
• Exploiting radiation damage to map proteins in nucleoprotein complexes: the internal structure of bacteriophage T7.

  2014cited by this paper
• Biophysical studies reveal new evidence for one-way revolution mechanism of bacteriophage ϕ29 DNA packaging motor.

  2014cited by this paper
• The Bacteriophage T7 Virion Undergoes Extensive Structural Remodeling During Infection

  2013cited by this paper
• Visualization of uncorrelated, tandem symmetry mismatches in the internal genome packaging apparatus of bacteriophage T7

  2013cited by this paper
• Popping the cork: mechanisms of phage genome ejection

  2013cited by this paper
• The ATPase of the phi29 DNA packaging motor is a member of the hexameric AAA+ superfamily

  2013cited by this paper
• Simple topology: FtsK-directed recombination at the dif site.

  2013cited by this paper
• Fabrication of 14 different RNA nanoparticles for specific tumor targeting without accumulation in normal organs.

  2013cited by this paper
• The FtsK Family of DNA Pumps.

  2013cited by this paper
• Revolution rather than rotation of AAA+ hexameric phi29 nanomotor for viral dsDNA packaging without coiling

  2013cited by this paper
• Recruitment, Assembly, and Molecular Architecture of the SpoIIIE DNA Pump Revealed by Superresolution Microscopy

  2013cited by this paper
• Mechanism of One-Way Traffic of Hexameric Phi29 DNA Packaging Motor with Four Electropositive Relaying Layers Facilitating Antiparallel Revolution

  2013cited by this paper
• Channel size conversion of Phi29 DNA-packaging nanomotor for discrimination of single- and double-stranded nucleic acids.

  2013cited by this paper
• Structural Characterization of the Bacteriophage T7 Tail Machinery*♦

  2013cited by this paper
• Fabrication of pRNA nanoparticles to deliver therapeutic RNAs and bioactive compounds into tumor cells

  2013cited by this paper
• SpoIIIE mechanism of directional translocation involves target search coupled to sequence‐dependent motor stimulation

  2013cited by this paper
• Discovery of a new motion mechanism of biomotors similar to the earth revolving around the sun without rotation

  2013cited by this paper
• Crystal structure of 3WJ core revealing divalent ion-promoted thermostability and assembly of the Phi29 hexameric motor pRNA

  2013cited by this paper
• High degree of coordination and division of labor among subunits in a homomeric ring ATPase.

  2012cited by this paper
• The dynamic pause-unpackaging state, an off-translocation recovery state of a DNA packaging motor from bacteriophage T4

  2012cited by this paper
• Role of channel lysines and the "push through a one-way valve" mechanism of the viral DNA packaging motor.

  2012cited by this paper
• The hexameric helicase DnaB adopts a nonplanar conformation during translocation.

  2012cited by this paper
• Compression of the DNA substrate by a viral packaging motor is supported by removal of intercalating dye during translocation

  2012cited by this paper
• "Push through one-way valve" mechanism of viral DNA packaging.

  2012cited by this paper
• Role of DNA-DNA interactions on the structure and thermodynamics of bacteriophages Lambda and P4.

  2011cited by this paper
• Role of φ29 connector channel loops in late-stage DNA packaging.

  2011cited by this paper
• Three reversible and controllable discrete steps of channel gating of a viral DNA packaging motor.

  2011cited by this paper
• Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase

  2011cited by this paper
• Structure and mechanism of the hexameric MecA–ClpC molecular machine

  2011cited by this paper
• Encyclopedia of nanoscience and nanotechnology

  2011cited by this paper
• The DNA-packaging nanomotor of tailed bacteriophages

  2011cited by this paper
• Sequential action of ATPase, ATP, ADP, Pi and dsDNA in procapsid-free system to enlighten mechanism in viral dsDNA packaging

  2011cited by this paper
• Three-dimensional structure of a viral genome-delivery portal vertex

  2011cited by this paper
• Players between the worlds: multifunctional DNA translocases.

  2011cited by this paper
• Membrane-associated DNA transport machines.

  2010cited by this paper
• Separating speed and ability to displace roadblocks during DNA translocation by FtsK

  2010cited by this paper
• Dynamics of bacteriophage genome ejection in vitro and in vivo

  2010cited by this paper
• The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins.

  2010cited by this paper
• Sequence-specific assembly of FtsK hexamers establishes directional translocation on DNA

  2010cited by this paper
• Dynamic SpoIIIE assembly mediates septal membrane fission during Bacillus subtilis sporulation.

  2010cited by this paper
• which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Analysis of the role of PCNA-DNA contacts during clamp loading

  2010cited by this paper
• A Hypothesis for Bacteriophage DNA Packaging Motors

  2010cited by this paper
• One-Way Traffic of a Viral Motor Channel for Double-Stranded DNA Translocation

  2010cited by this paper
• Mechanochemistry of a viral DNA packaging motor.

  2010cited by this paper
• FtsK DNA Translocase: The Fast Motor That Knows Where It's Going

  2010cited by this paper
• The Conjugative DNA Translocase TrwB Is a Structure-specific DNA-binding Protein*

  2010cited by this paper
• Genome packaging in viruses.

  2010cited by this paper
• DNA crunching by a viral packaging motor: Compression of a procapsid-portal stalled Y-DNA substrate.

  2010cited by this paper
• Mechanism of replication machinery assembly as revealed by the DNA ligase–PCNA–DNA complex architecture

  2009cited by this paper
• Structure of bacteriophage SPP1 head-to-tail connection reveals mechanism for viral DNA gating

  2009cited by this paper
• Inter-Subunit Coordination in a Homomeric Ring-ATPase

  2009cited by this paper
• Substrate Interactions and Promiscuity in a Viral DNA Packaging Motor

  2009cited by this paper
• Construction of Bacteriophage Phi29 DNA Packaging Motor and its Applications in Nanotechnology and Therapy

  2009cited by this paper
• Running in reverse: the structural basis for translocation polarity in hexameric helicases.

  2009cited by this paper
• DNA poised for release in bacteriophage phi29.

  2008cited by this paper
• Bright-field analysis of phi29 DNA packaging motor using a magnetomechanical system.

  2008cited by this paper
• Modulation of the packaging reaction of bacteriophage t4 terminase by DNA structure.

  2008cited by this paper
• AAA+ proteins: diversity in function, similarity in structure.

  2008cited by this paper
• The bacteriophage DNA packaging motor.

  2008cited by this paper
• Molecular mechanism of sequence-directed DNA loading and translocation by FtsK.

  2008cited by this paper
• DNA packaging motor assembly intermediate of bacteriophage phi29.

  2008cited by this paper
• Novel mechanism of hexamer ring assembly in protein/RNA interactions revealed by single molecule imaging

  2008cited by this paper
• The structure of the phage T4 DNA packaging motor suggests a mechanism dependent on electrostatic forces.

  2008cited by this paper
• Defining molecular and domain boundaries in the bacteriophage phi29 DNA packaging motor.

  2008cited by this paper
• Asymmetric EM reveals new twists in phage phi29 biology.

  2008cited by this paper
• Strand and nucleotide-dependent ATPase activity of gp16 of bacterial virus phi29 DNA packaging motor.

  2008cited by this paper
• Structural analysis of the Sulfolobus solfataricus MCM protein N-terminal domain

  2008cited by this paper
• The AAA+ superfamily of functionally diverse proteins

  2008cited by this paper
• Packaging double-helical DNA into viral capsids: structures, forces, and energetics.

  2008cited by this paper
• Sporulation: SpoIIIE is the key to cell differentiation.

  2008cited by this paper
• Structural framework for DNA translocation via the viral portal protein

  2007cited by this paper
• Structure of Hexameric DnaB Helicase and Its Complex with a Domain of DnaG Primase

  2007cited by this paper
• Viral nanomotors for packaging of dsDNA and dsRNA

  2007cited by this paper
• Experimental Test of Connector Rotation during DNA Packaging into Bacteriophage ϕ29 Capsids

  2007cited by this paper
• Grouping of ferritin and gold nanoparticles conjugated to pRNA of the phage phi29 DNA-packaging motor.

  2007cited by this paper
• Counting of six pRNAs of phi29 DNA‐packaging motor with customized single‐molecule dual‐view system

  2007cited by this paper
• The gpQ portal protein of bacteriophage P2 forms dodecameric connectors in crystals.

  2007cited by this paper
• FtsK and SpoIIIE: the tale of the conserved tails

  2007cited by this paper
• The ATPase Activity of the DNA Transporter TrwB Is Modulated by Protein TrwA

  2007cited by this paper
• The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids.

  2007cited by this paper
• In Vivo Hexamerization and Characterization of the Arabidopsis AAA ATPase CDC48A Complex Using Förster Resonance Energy Transfer-Fluorescence Lifetime Imaging Microscopy and Fluorescence Correlation Spectroscopy1[W][OA]

  2007cited by this paper
• Viral DNA packaging studied by fluorescence correlation spectroscopy.

  2007cited by this paper
• The Structure of an Infectious P22 Virion Shows the Signal for Headful DNA Packaging

  2006cited by this paper
• Role of ATP hydrolysis in the DNA translocase activity of the bovine papillomavirus (BPV-1) E1 helicase

  2006cited by this paper
• Mechanism of DNA translocation in a replicative hexameric helicase

  2006cited by this paper
• Structure of epsilon15 bacteriophage reveals genome organization and DNA packaging/injection apparatus

  2006cited by this paper
• The FtsK γ domain directs oriented DNA translocation by interacting with KOPS

  2006cited by this paper
• TrwB: an F(1)-ATPase-like molecular motor involved in DNA transport during bacterial conjugation.

  2006cited by this paper
• Portal fusion protein constraints on function in DNA packaging of bacteriophage T4

  2006cited by this paper
• Double-stranded DNA translocation: structure and mechanism of hexameric FtsK.

  2006cited by this paper
• Direct observation of DNA rotation during branch migration of Holliday junction DNA by Escherichia coli RuvA-RuvB protein complex.

  2006cited by this paper
• Interaction of gp16 with pRNA and DNA for genome packaging by the motor of bacterial virus phi29.

  2006cited by this paper
• The FtsK gamma domain directs oriented DNA translocation by interacting with KOPS.

  2006cited by this paper
• Bacteriophage lambda gpNu1 and Escherichia coli IHF proteins cooperatively bind and bend viral DNA: implications for the assembly of a genome-packaging motor.

  2006cited by this paper
• Classification of AAA+ proteins.

  2006cited by this paper

• Biological characterization and genomic analysis of Lactiplantibacillus plantarum temperate phage

  2026cites this paper
• DNA/RNA hybrids avoid channel gating that leads to the continued packaging of numerous hybrids into the phi29 protein shell

  2025cites this paper
• Constructing an active chimeric pRNA ring with a stoichiometry of six and identifying 12 domains of the pRNA ring binding to the 12-subunit channel of phi29 DNA packaging motor.

  2025cites this paper
• Revolving ATPase motors as asymmetrical hexamers in translocating lengthy dsDNA via conformational changes and electrostatic interactions in phi29, T7, herpesvirus, mimivirus, E. coli, and Streptomyces

  2023cites this paper
• Genotyping Protocols for Genetically Engineered Mice

  2023cites this paper
• Revolving hexameric ATPases as asymmetric motors to translocate double-stranded DNA genome along one strand

  2023influential citation
• Cryo-EM structure of a kinetically trapped dodecameric portal protein from the Pseudomonas-phage PaP3.

  2022cites this paper
• Viral Small Terminase: A Divergent Structural Framework for a Conserved Biological Function

  2022cites this paper
• Terminase subunits from the Pseudomonas-phage E217.

  2022cites this paper
• Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions

  2022cites this paper
• Voltage controlled shutter regulates channel size and motion direction of protein aperture as durable nano-electric rectifier-----An opinion in biomimetic nanoaperture.

  2022cites this paper
• The Planar Lipid Bilayer Membrane Measurements for the Connector in Phi29 Bacteriophage Reveal the Functions of Its Channel Loops.

  2021cites this paper
• Identification of Arginine Finger as the Starter of the Biomimetic Motor in Driving Double-Stranded DNA

  2021cites this paper
• Translation of the long-term fundamental studies on viral DNA packaging motors into nanotechnology and nanomedicine

  2020influential citation
• Mechanical mechanism for the translocation of hexameric and nonstructural helicases: Dependence on physical parameters

  2020cites this paper
• Biophysical analysis of Pseudomonas-phage PaP3 small terminase suggests a mechanism for sequence-specific DNA-binding by lateral interdigitation

  2020cites this paper
• The characteristics and genome analysis of the novel Y. pestis phage JC221.

  2020cites this paper
• Nanorobots With Applications in Medicine

  2019cites this paper
• Terminase Large Subunit Provides a New Drug Target for Herpesvirus Treatment

  2019cites this paper
• Translocation of non-interacting heteropolymer protein chains in terms of single helical propensity and size.

  2019cites this paper
• Controlling the Revolving and Rotating Motion Direction of Asymmetric Hexameric Nanomotor by Arginine Finger and Channel Chirality

  2019cites this paper
• Breaking Symmetry in Viral Icosahedral Capsids as Seen through the Lenses of X-ray Crystallography and Cryo-Electron Microscopy

  2018cites this paper
• A mechanical mechanism for translocation of ring-shaped helicases on DNA and its demonstration in a macroscopic simulation system

  2018cites this paper
• Nano-channel of viral DNA packaging motor as single pore to differentiate peptides with single amino acid difference.

  2018cites this paper
• Discrimination and Sequencing of Polymers with Biological Nanopores

  2018cites this paper
• Channel of viral DNA packaging motor for real time kinetic analysis of peptide oxidation states.

  2017cites this paper
• Overview of the Diverse Roles of Bacterial and Archaeal Cytoskeletons.

  2017cites this paper
• The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection

  2017cites this paper
• Portal protein functions akin to a DNA-sensor that couples genome-packaging to icosahedral capsid maturation

  2017cites this paper
• Discovery of a new method for potent drug development using power function of stoichiometry of homomeric biocomplexes or biological nanomotors

  2016cites this paper
• Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism

  2016cites this paper
• Arginine finger regulates sequential action of asymmetrical 1 hexameric ATPase in dsDNA translocation motor 2 3

  2016cites this paper
• Divergent Evolution of Nuclear Localization Signal Sequences in Herpesvirus Terminase Subunits*

  2016cites this paper
• RNA Nanotechnology for Next Generation Targeted Drug Delivery

  2016cites this paper
• TOWARDS ELUCIDATION OF THE MECHANISM OF BIOLOGICAL NANOMOTORS

  2016influential citation
• Development of New Biological Nanopores and Their Application for Biosensing and Disease Detection

  2016cites this paper
• Non-monotonous polymer translocation time across corrugated channels: comparison between Fick-Jacobs approximation and numerical simulations

  2016cites this paper
• An Arginine Finger Regulates the Sequential Action of Asymmetrical Hexameric ATPase in the Double-Stranded DNA Translocation Motor

  2016cites this paper
• The SOS Response of Biofilms

  2016cites this paper
• Highly efficient integration of the viral portal proteins from different types of phages into planar bilayers for the black lipid membrane analysis.

  2016cites this paper
• Forces from the Portal Govern the Late-Stage DNA Transport in a Viral DNA Packaging Nanomotor.

  2016cites this paper
• Development of Potent Antiviral Drugs Inspired by Viral Hexameric DNA-Packaging Motors with Revolving Mechanism

  2016cites this paper
• Simple Method for Constructing RNA Triangle, Square, Pentagon by Tuning Interior RNA 3WJ Angle from 60° to 90° or 108°.

  2015cites this paper
• Architecture of the Complex Formed by Large and Small Terminase Subunits from Bacteriophage P22.

  2015cites this paper
• RNA Scaffolds

  2015cites this paper
• Mechanism of subunit coordination of an AAA+ hexameric molecular nanomachine.

  2015cites this paper
• New approach to develop ultra-high inhibitory drug using the power function of the stoichiometry of the targeted nanomachine or biocomplex.

  2015influential citation
• RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications

  2015cites this paper
• An RNA Aptamer Specific to Hsp70-ATP Conformation Inhibits its ATPase Activity Independent of Hsp40

  2015cites this paper
• Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers

  2014cites this paper
• Nanobiomotors of archaeal DNA repair machineries: current research status and application potential

  2014cites this paper
• Viral and cellular SOS-regulated motor proteins: dsDNA translocation mechanisms with divergent functions

  2014cites this paper
• Two classes of nucleic acid translocation motors: rotation and revolution without rotation

  2014influential citation
• Finding of widespread viral and bacterial revolution dsDNA translocation motors distinct from rotation motors by channel chirality and size

  2014influential citation