Comparative Proteomics of Dehalococcoides spp. Reveals Strain-Specific Peptides Associated with Activity

No abstract is available for this paper.

• Publication year

  2006

• Venue

  Applied and Environmental Microbiology

• Publication date

  2006-11-10

• Fields of study

  Biology, Medicine, Chemistry, Environmental Science

• Identifiers
  DOI 10.1128/AEM.02129-06PMID 17098919PMCID PMC1797105
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Transcription and mass-spectroscopic proteomic studies of electron transport oxidoreductases in Dehalococcoides ethenogenes.

  2006cited by this paper
• Temporal Expression of Respiratory Genes in an Enrichment Culture Containing Dehalococcoides ethenogenes

  2006cited by this paper
• Multiple Reductive-Dehalogenase-Homologous Genes Are Simultaneously Transcribed during Dechlorination by Dehalococcoides-Containing Cultures

  2005influential reference
• Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1

  2005cited by this paper
• Phospholipid Furan Fatty Acids and Ubiquinone-8: Lipid Biomarkers That May Protect Dehalococcoides Strains from Free Radicals

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• Community Proteomics of a Natural Microbial Biofilm

  2005cited by this paper
• Transcriptional Expression of the tceA Gene in a Dehalococcoides-Containing Microbial Enrichment

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• Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

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• Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein*S

  2005influential reference
• Proteorhodopsin in the ubiquitous marine bacterium SAR11

  2005cited by this paper
• Vaginal rugae: measurement and significance

  2005cited by this paper
• Multiple Nonidentical Reductive-Dehalogenase-Homologous Genes Are Common in Dehalococcoides

  2004cited by this paper
• PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]

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• Characterization of a Highly Enriched Dehalococcoides-Containing Culture That Grows on Vinyl Chloride and Trichloroethene

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• Genetic Identification of a Putative Vinyl Chloride Reductase in Dehalococcoides sp. Strain BAV1

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• Community structure and metabolism through reconstruction of microbial genomes from the environment

  2004cited by this paper
• Molecular Identification of the Catabolic Vinyl Chloride Reductase from Dehalococcoides sp. Strain VS and Its Environmental Distribution

  2004cited by this paper
• Anaerobic microbial dehalogenation.

  2003cited by this paper
• Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium

  2003cited by this paper
• Molecular Analysis of Dehalococcoides 16S Ribosomal DNA from Chloroethene-Contaminated Sites throughout North America and Europe

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  2002cited by this paper
• Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene.

  2002cited by this paper
• Pathogenicity islands and the evolution of microbes.

  2000cited by this paper
• Bacterial dehalorespiration with chlorinated benzenes

  2000cited by this paper
• Trichloroethene Reductive Dehalogenase fromDehalococcoides ethenogenes: Sequence of tceA and Substrate Range Characterization

  2000cited by this paper
• Modeling the Production of and Competition for Hydrogen in a Dechlorinating Culture

  1998cited by this paper
• Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene.

  1997cited by this paper
• Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels.

  1996cited by this paper
• Anaerobic degradation of toluene and o-xylene by a methanogenic consortium

  1994influential reference

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• Efficient degradation of hexabromocyclododecane using montmorillonite supported nano-zero-valent iron and Citrobacter sp. Y3.

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  2020cites this paper
• Metagenome-Guided Proteomic Quantification of Reductive Dehalogenases in the Dehalococcoides mccartyi - Containing Consortium SDC-9.

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• Structural dynamics and transcriptomic analysis of Dehalococcoides mccartyi within a TCE-Dechlorinating community in a completely mixed flow reactor.

  2019cites this paper
• Targeted detection of Dehalococcoides mccartyi microbial protein biomarkers as indicators of reductive dechlorination activity in contaminated groundwater

  2019cites this paper
• Development of Field Methodology to Rapidly Detect Dehalococcoides and Dehalobacter Spp. Genes On-Site

  2019cites this paper
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  2019cites this paper
• Syntrophic Partners Enhance Growth and Respiratory Dehalogenation of Hexachlorobenzene by Dehalococcoides mccartyi Strain CBDB1

  2018cites this paper
• An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research

  2018cites this paper
• Eight new genomes of organohalide-respiring Dehalococcoides mccartyi reveal evolutionary trends in reductive dehalogenase enzymes

  2018cites this paper
• Abundance of Chlorinated Solvent and 1,4-Dioxane Degrading Microorganisms at Five Chlorinated Solvent Contaminated Sites Determined via Shotgun Sequencing.

  2018cites this paper
• Biomarkers’ Responses to Reductive Dechlorination Rates and Oxygen Stress in Bioaugmentation Culture KB-1TM

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• Organohalide respiratory chains: composition, topology and key enzymes

  2018cites this paper
• Isolation and Characterization of Dehalobacter sp. Strain TeCB1 Including Identification of TcbA: A Novel Tetra- and Trichlorobenzene Reductive Dehalogenase

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• Reconstructed genomes of novel Dehalococcoides mccartyi strains from 1,2,3,4‐tetrachlorodibenzo‐p‐dioxin‐dechlorinating enrichment cultures reveal divergent reductive dehalogenase gene profiles

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• Anaerobic transformation of brominated aromatic compounds by Dehalococcoides mccartyi strain CBDB1

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  2017cites this paper
• Dehalogenimonas formicexedens sp. nov., a chlorinated alkane-respiring bacterium isolated from contaminated groundwater.

  2017cites this paper
• Dehalococcoides has a dehalogenation complex.

  2016cites this paper
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  2016cites this paper
• Identification of a multi-protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein-dependent respiratory electron transport chain obviating quinone involvement.

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• The restricted metabolism of the obligate organohalide respiring bacterium Dehalobacter restrictus: lessons from tiered functional genomics

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• Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

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• Occurrence of Dehalococcoides and Reductive Dehalogenase Genes in Microcosms, a Constructed Wetland and Groundwater from a Chlorinated Ethene Contaminated Field Site as Indicators for In Situ Reductive Dehalogenation

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