Crystallographic refinement and structure of ribulose-1,5-bisphosphate carboxylase from Rhodospirillum rubrum at 1.7 A resolution.

No abstract is available for this paper.

• Publication year

  1990

• Venue

  Journal of Molecular Biology

• Publication date

  1990-02-20

• Fields of study

  Biology, Medicine, Chemistry

• Identifiers
  DOI 10.1016/0022-2836(90)90088-4PMID 2107319
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Crystal structure of the binary complex of ribulose-1,5-bisphosphate carboxylase and its product, 3-phospho-D-glycerate.

  1991cited by this paper
• Crystal structure of the complex of ribulose-1,5-bisphosphate carboxylase and a transition state analogue, 2-carboxy-D-arabinitol 1,5-bisphosphate.

  1989cited by this paper
• Crystal structure of the active site of ribulose-bisphosphate carboxylase

  1989cited by this paper
• Refined structure of spinach glycolate oxidase at 2 A resolution.

  1989cited by this paper
• Evidence supporting lysine 166 of Rhodospirillum rubrum ribulosebisphosphate carboxylase as the essential base which initiates catalysis.

  1988cited by this paper
• Surface, subunit interfaces and interior of oligomeric proteins.

  1988cited by this paper
• Tertiary structure of plant RuBisCO: domains and their contacts.

  1988cited by this paper
• Röntgenstrukturanalyse von 2-[6-Fluor-1,4-dihydro-1-mesityl-2-phenyl-5-(trifluormethyl)-4-pyrimidinyl[-1,4-dihydro-1-mesityl-6-phenyl-4,4-bis(trifluormethyl)-1,3,5-triazin

  1987cited by this paper
• Function of Lys-166 of Rhodospirillum rubrum ribulosebisphosphate carboxylase/oxygenase as examined by site-directed mutagenesis.

  1987cited by this paper
• Interior and surface of monomeric proteins.

  1987cited by this paper
• Sliding-layer conformational change limited by the quaternary structure of plant RuBisCO

  1987cited by this paper
• Intersubunit location of the active site of ribulose-bisphosphate carboxylase/oxygenase as determined by in vivo hybridization of site-directed mutants.

  1987cited by this paper
• Essentiality of Glu-48 of ribulose bisphosphate carboxylase/oxygenase as demonstrated by site-directed mutagenesis.

  1987cited by this paper
• New crystal forms of ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum.

  1986cited by this paper
• Nonessentiality of histidine 291 of Rhodospirillum rubrum ribulose-bisphosphate carboxylase/oxygenase as determined by site-directed mutagenesis.

  1986cited by this paper
• Ribulose 1,5-bisphosphate carboxylase. Effect on the catalytic properties of changing methionine-330 to leucine in the Rhodospirillum rubrum enzyme.

  1986cited by this paper
• Three‐dimensional structure of ribulose‐1,5‐bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum at 2.9 Å resolution

  1986cited by this paper
• Crystallographic refinement and structure of DNase I at 2 A resolution.

  1986cited by this paper
• Using known substructures in protein model building and crystallography.

  1986cited by this paper
• Reaction intermediate partitioning by ribulose-bisphosphate carboxylases with differing substrate specificities.

  1986cited by this paper
• Site-specific mutagenesis of ribulose-1,5-bisphosphate carboxylase/oxygenase. Evidence that carbamate formation at Lys 191 is required for catalytic activity.

  1985cited by this paper
• Ionization constants of two active-site lysyl epsilon-amino groups of ribulosebisphosphate carboxylase/oxygenase.

  1985cited by this paper
• Large-scale preparation of ribulosebisphosphate carboxylase from a recombinant system in Escherichia coli characterized by extreme plasmid instability

  1985cited by this paper
• Crystallization of the activated ternary complex of ribulose-1,5-bisphosphate carboxylase-oxygenase isolated from Rhodospirillum rubrum and from an Escherichia coli clone.

  1985cited by this paper
• A site‐specific mutation within the active site of ribulose‐1,5‐bisphosphate carboxylase of Rhodospirillum rubrum

  1984cited by this paper
• 2-(4-Bromoacetamido)anilino-2-deoxypentitol 1,5-bisphosphate, a new affinity label for ribulose bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum. Determination of reaction parameters and characterization of an active site peptide.

  1984cited by this paper
• Preliminary structural studies of ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum.

  1984cited by this paper
• Preliminary X-ray diffraction study of ribulose-1,5-bisphosphate carboxylase from Rhodospirillum rubrum.

  1984cited by this paper
• Hydrogen bonding in globular proteins.

  1984cited by this paper
• Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features

  1983cited by this paper
• Structure and refinement of penicillopepsin at 1.8 A resolution.

  1983cited by this paper
• 2-Bromoacetylaminopentitol 1,5-bisphosphate as an affinity label for ribulose bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum.

  1982cited by this paper
• Reexamination of the binding site for pyridoxal 5'-phosphate in ribulosebisphosphate carboxylase/oxygenase from Rhodospirillum rubrum

  1982cited by this paper
• Reexamination of the binding site for pyridoxal 5'-phosphate in ribulosebisphosphate carboxylase/oxygenase from Rhodospirillum rubrum.

  1982cited by this paper
• Purification and sequencing of cyanogen bromide fragments from ribulosebisphosphate carboxylase/oxygenase from Rhodospirillum rubrum.

  1982cited by this paper
• On the three-dimensional structure and catalytic mechanism of triose phosphate isomerase.

  1981cited by this paper
• An oscillation data collection system for high‐resolution protein crystallography

  1981cited by this paper
• The anatomy and taxonomy of protein structure.

  1981cited by this paper
• Ribulosebisphosphate carboxylase: amino acid sequence of a peptide bearing the activator carbon dioxide.

  1981cited by this paper
• A restrained-parameter thermal-factor refinement procedure

  1980cited by this paper
• Processing oscillation diffraction data for very large unit cells with an automatic convolution technique and profile fitting

  1979cited by this paper
• Conformation of amino acid side-chains in proteins.

  1978cited by this paper
• A graphics model building and refinement system for macromolecules

  1978cited by this paper
• A structure-factor least-squares refinement procedure for macromolecular structures using constrained and restrained parameters

  1977cited by this paper
• Methods and programs for direct‐space exploitation of geometric redundancies

  1976cited by this paper
• Stereochemical criteria for polypeptide and protein chain conformations. 3. Helical and hydrogen-bonded polypeptide chains.

  1966cited by this paper
• Stereochemical criteria for polypeptide and protein chain conformations. II. Allowed conformations for a pair of peptide units.

  1965cited by this paper
• Traitement statistique des erreurs dans la determination des structures cristallines

  1952cited by this paper

• High-resolution structure of the heat-stable form-IAq RuBisCO from the thermophilic purple sulfur bacterium Thermochromatium tepidum

  2025influential citation
• Room-temperature serial synchrotron crystallography structure of Spinacia oleracea RuBisCO

  2024cites this paper
• Structural plasticity enables evolution and innovation of RuBisCO assemblies

  2022cites this paper
• Using form II ribulose-1,5-bisphosphate carboxylase/oxygenase to estimate the phototrophic potentials of Symbiodinium, Cladocopium and Durusdinium in various organs of the fluted giant clam, Tridacna squamosa, and to evaluate their responses to light upon isolation from the host

  2021cites this paper
• Using form II ribulose-1,5-bisphosphate carboxylase/oxygenase to estimate the phototrophic potentials of Symbiodinium, Cladocopium and Durusdinium in various organs of the fluted giant clam, Tridacna squamosa, and to evaluate their responses to light upon isolation from the host

  2021influential citation
• Insights into the Structure of Rubisco from Dinoflagellates-In Silico Studies

  2021cites this paper
• BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco.

  2018cites this paper
• Exploring Protein Structure: Principles and Practice

  2018cites this paper
• The Prodigal Compound: Return of Ribosyl 1,5-Bisphosphate as an Important Player in Metabolism

  2018cites this paper
• Moving from Former to Future Frontiers

  2018cites this paper
• Synthetic CO2-fixation enzyme cascades immobilized on self-assembled nanostructures that enhance CO2/O2 selectivity of RubisCO

  2017cites this paper
• Structure-function studies on enzymes of the methionine salvage pathway in Bacillus subtilis

  2016cites this paper
• Photosynthetic Carbon Metabolism: Strategy of Adaptation over Evolutionary History

  2015cites this paper
• Carbon-Concentrating Mechanism

  2014cites this paper
• Structure-Function Studies with the Unique Hexameric Form II Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) from Rhodopseudomonas palustris*

  2014cites this paper
• Diversity of RuBisCO gene responsible for CO2 fixation in an Antarctic moss pillar

  2012cites this paper
• Rubisco folding and oligomeric assembly: Detailed analysis of an assembly intermediate

  2011cites this paper
• An evolutionally conserved Lys122 is essential for function in Rhodospirillum rubrum bona fide RuBisCO and Bacillus subtilis RuBisCO-like protein.

  2010cites this paper
• Coupled chaperone action in folding and assembly of hexadecameric Rubisco

  2010cites this paper
• Molecular modeling of rice Rubisco

  2010cites this paper
• Structure-based Catalytic Optimization of a Type III Rubisco from a Hyperthermophile*

  2010cites this paper
• Putative functional role for the invariant aspartate 263 residue of Rhodospirillum rubrum Rubisco.

  2009cites this paper
• Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis.

  2009cites this paper
• Phylogeny and evolution of the ribulose 1,5-bisphosphate carboxylase/oxygenase genes in prokaryotes

  2009cites this paper
• Structure and function of Rubisco.

  2008cites this paper
• Directed evolution of rubisco in Escherichia coli reveals a specificity-determining hydrogen bond in the form II enzyme.

  2007cites this paper
• Distinct form I, II, III, and IV Rubisco proteins from the three kingdoms of life provide clues about Rubisco evolution and structure/function relationships.

  2007cites this paper
• Catalysis and regulation in Rubisco.

  2007cites this paper
• The photosynthetic process

  2006cites this paper
• A Conserved Mechanism Controls Translation of Rubisco Large Subunit in Different Photosynthetic Organisms1

  2006influential citation
• Crystal structure of a RuBisCO-like protein from the green sulfur bacterium Chlorobium tepidum.

  2005influential citation
• Interaction between tobacco Ribulose-l,5-biphosphate Carboxylase/Oxygenase large subunit (RubisCO-LSU) and the PVY Coat Protein (PVY-CP)

  2005cites this paper
• Expansion and compression of a protein folding intermediate by GroEL.

  2004cites this paper
• Structural framework for catalysis and regulation in ribulose-1,5-bisphosphate carboxylase/oxygenase.

  2003cites this paper
• Diversity and Production of Phytoplankton in the Offshore Mississippi River Plume and Coastal Environments

  2003cites this paper
• The Unique Pentagonal Structure of an Archaeal Rubisco Is Essential for Its High Thermostability*

  2002cites this paper
• Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.

  2002cites this paper
• Molecular characterization and endosymbiotic localization of the gene encoding D-ribulose 1,5-bisphosphate carboxylase-oxygenase (RuBisCO) form II in the deep-sea vestimentiferan trophosome.

  2002influential citation
• Multifaceted roles of Lys166 of ribulose-bisphosphate carboxylase/oxygenase as discerned by product analysis and chemical rescue of site-directed mutants.

  2002cites this paper
• Ribulose-1,5-bisphosphate carboxylase/oxygenase from Thermococcus kodakaraensis KOD1.

  2001cites this paper
• The Dimerization of Folded Monomers of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase* 210

  2001cites this paper
• Crystal structure of a novel-type archaeal rubisco with pentagonal symmetry.

  2001cites this paper
• The role of structural intersubunit microheterogeneity in the regulation of the activity in hysteresis of ribulose 1, 5-bisphosphate carboxylase/oxygenase.

  2000cites this paper
• Chaperonin function: folding by forced unfolding.

  1999cites this paper
• Concepts in photobiology : photosynthesis and photomorphogenesis

  1999cites this paper
• The Photosynthetic Process

  1999cites this paper
• Ribulose bisphosphate carboxylase/oxygenase from the hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1 is composed solely of large subunits and forms a pentagonal structure.

  1999cites this paper
• Rubisco: attempts to reform a promiscuous enzyme

  1999cites this paper
• Purification, crystallization and preliminary X-ray studies of two isoforms of Rubisco from Alcaligenes eutrophus.

  1999cites this paper
• The crystal structure of rubisco from Alcaligenes eutrophus reveals a novel central eight-stranded beta-barrel formed by beta-strands from four subunits.

  1999cites this paper
• Similarity of different 6-strands flanked in loops by glycines and prolines from distinct (a/&barrel enzymes: Chance or a homology?

  1999cites this paper
• A study of conserved in-loop and out-of-loop glycine residues in the large subunit of ribulose bisphosphate carboxylase/oxygenase by directed mutagenesis.

  1998cites this paper
• Mechanism of Rubisco: The Carbamate as General Base.

  1998cites this paper
• Effect of mutations of residue 340 in the large subunit polypeptide of Rubisco from Anacystis nidulans.

  1998cites this paper
• Different properties of gene products of three sets ribulose 1,5-bisphosphate carboxylase/oxygenase from a marine obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenovibrio marinus strain MH-110

  1998cites this paper
• The structure and function of RuBisCO and their implications for systematic studies.

  1997cites this paper
• Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

  1997influential citation
• Structure of a product complex of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase.

  1997cites this paper
• Microbial ribulose 1,5-bisphosphate carboxylase/oxygenase: a molecule for phylogenetic and enzymological investigation.

  1997cites this paper
• Substrate induced reactivation of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase denatured by low concentrations of guanidine hydrochloride.

  1997cites this paper
• Structure and function of manganese-containing biomolecules

  1996cites this paper
• Deduced amino acid sequence, functional expression, and unique enzymatic properties of the form I and form II ribulose bisphosphate carboxylase/oxygenase from the chemoautotrophic bacterium Thiobacillus denitrificans

  1996cites this paper
• Large structures at high resolution: the 1.6 A crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase complexed with 2-carboxyarabinitol bisphosphate.

  1996cites this paper
• Invariant glycines and prolines flanking in loops the strand β2 of various (α/β)8‐barrel enzymes: A hidden homology?

  1996cites this paper
• Structural transitions during activation and ligand binding in hexadecameric Rubisco inferred from the crystal structure of the activated unliganded spinach enzyme

  1996cites this paper
• Crystal structure of thermostable family 5 endocellulase E1 from Acidothermus cellulolyticus in complex with cellotetraose.

  1996cites this paper
• Solvent interactions with pi ring systems in proteins.

  1995cites this paper
• Mechanistic insights provided by deletion of a flexible loop at the active site of ribulose-1,5-bisphosphate carboxylase/oxygenase.

  1995cites this paper
• Where freedom is given, liberties are taken.

  1995cites this paper
• Three‐dimensional model of the α‐subunit of bacterial luciferase

  1995cites this paper
• Rubisco Synthesis, Assembly, Mechanism, and Regulation.

  1995cites this paper
• Utilization of partial reactions, side reactions, and chemical rescue to analyze site-directed mutants of ribulose 1,5-bisphosphate (RuBP) carboxylase/oxygenase (rubisco)

  1995cites this paper
• Activator carbamino carbon to inhibitor phosphorus internuclear distances in ribulose-1,5-bisphosphate carboxylase/oxygenase. A solid-state NMR study.

  1995cites this paper
• Similarity of different β‐strands flanked in loops by glycines and prolines from distinct (α/β)8‐barrel enzymes: Chance or a homology?

  1995cites this paper
• Beta-glucosidase, beta-galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes with 8-fold beta/alpha architecture and with two conserved glutamates near the carboxy-terminal ends of beta-strands four and seven.

  1995cites this paper
• The crystal structures of Rubisco and opportunities for manipulating photosynthesis

  1995cites this paper
• The Biochemistry and Metabolic Regulation of Carbon Metabolism and CO2 Fixation in Purple Bacteria

  1995cites this paper
• β‐Glucosidase, β‐galactosidase, family A cellulases, family F xylanases and two barley glycanases form a superfamily of enzymes wit 8‐fold β/α architecture and with two conserved glutamates near the carboxy‐terminal ends of β‐strands four and seven

  1995cites this paper
• Structural information on proteins from circular dichroism spectroscopy possibilities and limitations.

  1995cites this paper
• A structural role for arginine in proteins: Multiple hydrogen bonds to backbone carbonyl oxygens

  1994cites this paper
• Alignment of beta-barrels in (beta/alpha)8 proteins using hydrogen-bonding pattern.

  1994cites this paper
• Active-site histidines in recombinant cyanobacterial ribulose-1,5-bisphosphate carboxylase/oxygenase examined by site-directed mutagenesis

  1994cites this paper
• Rates and patterns of chloroplast DNA evolution.

  1994cites this paper
• Ta6Br14 is a useful cluster compound for isomorphous replacement in protein crystallography.

  1994cites this paper
• Chemical rescue by exogenous amines of a site-directed mutant of ribulose 1,5-bisphosphate carboxylase/oxygenase that lacks a key lysyl residue.

  1994cites this paper
• Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures.

  1994cites this paper
• Directed mutagenesis of chloroplast ribulosebisphosphate carboxylase/oxygenase. Substitutions at large subunit asparagine 123 and serine 379 decrease CO2/O2 specificity.

  1994cites this paper
• Parallel beta/alpha-barrels of alpha-amylase, cyclodextrin glycosyltransferase and oligo-1,6-glucosidase versus the barrel of beta-amylase: evolutionary distance is a reflection of unrelated sequences.

  1994cites this paper
• Structure, function, regulation, and assembly of D-ribulose-1,5-bisphosphate carboxylase/oxygenase.

  1994cites this paper
• The Biochemistry and Molecular Regulation of Carbon Dioxide Metabolism in Cyanobacteria

  1994cites this paper
• Parallel β/α‐barrels of α‐amylase, cyclodextrin glycosyltransferase and oligo‐1,6‐glucosidase versus the barrel of β‐amylase: Evolutionary distance is a reflection of unrelated sequences

  1994cites this paper
• Carbon Dioxide Fixation in Biology: Structure and Function of Ribulose Biphosphate Carboxylase/ Oxygenase (Rubisco)

  1994cites this paper
• Interactions of Rubisco, Nature's Most Abundant Enzyme, with CO2

  1994cites this paper
• Enzyme catalysis and transition structures in vacuo. Transition structures for the enolization, carboxylation and oxygenation reactions in ribulose-1,5-bisphosphate carboxylase/oxygenase enzyme (Rubisco)

  1994cites this paper
• Biological coordination chemistry of magnesium, sodium, and potassium ions. Protein and nucleotide binding sites

  1994cites this paper
• Role of phenylalanine-327 in the closure of loop 6 of ribulosebisphosphate carboxylase/oxygenase from Rhodospirillum rubrum.

  1993cites this paper
• Dynamics of the history of photosynthesis research

  1993cites this paper
• A role for the epsilon-amino group of lysine-334 of ribulose-1,5-bisphosphate carboxylase in the addition of carbon dioxide to the 2,3-enediol(ate) of ribulose 1,5-bisphosphate.

  1993cites this paper
• Sequence similarities in (alpha/beta)8-barrel enzymes revealed by conserved regions of alpha-amylase.

  1993cites this paper
• Reversible dissociation and conformational stability of dimeric ribulose bisphosphate carboxylase.

  1993cites this paper