Genome-resolved diversity and biosynthetic potential of the coral reef microbiome

No abstract is available for this paper.

• Publication year

  2024

• Venue

  bioRxiv

• Publication date

  2024-08-18

• Fields of study

  Biology, Environmental Science

• Identifiers
  DOI 10.1101/2024.08.18.608444
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Diversity of the Pacific Ocean coral reef microbiome

  2023cited by this paper
• Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation

  2023cited by this paper
• A genome catalogue of lake bacterial diversity and its drivers at continental scale

  2023cited by this paper
• Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

  2023cited by this paper
• Reef-building corals farm and feed on their photosynthetic symbionts

  2023cited by this paper
• Animal-associated marine Acidobacteria with a rich natural-product repertoire

  2023influential reference
• Insights and achievements from the Tara Pacific expedition

  2023cited by this paper
• Strategies to access biosynthetic novelty in bacterial genomes for drug discovery

  2022cited by this paper
• Novel trends of genome evolution in highly complex tropical sponge microbiomes

  2022cited by this paper
• Metagenomic shifts in mucus, tissue and skeleton of the coral Balanophyllia europaea living along a natural CO2 gradient

  2022cited by this paper
• Greater functional diversity and redundancy of coral endolithic microbiomes align with lower coral bleaching susceptibility

  2022cited by this paper
• Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

  2022cited by this paper
• Biosynthetic potential of the global ocean microbiome

  2022influential reference
• Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome

  2022cited by this paper
• Nocardioides coralli sp. nov., an actinobacterium isolated from stony coral in the South China Sea.

  2022cited by this paper
• Compendium of specialized metabolite biosynthetic diversity encoded in bacterial genomes

  2022influential reference
• Cophylogeny and convergence shape holobiont evolution in sponge–microbe symbioses

  2022cited by this paper
• Comparative Metagenomic Analysis of Biosynthetic Diversity across Sponge Microbiomes Highlights Metabolic Novelty, Conservation, and Diversification

  2022cited by this paper
• Giant sponge grounds of Central Arctic seamounts are associated with extinct seep life

  2022cited by this paper
• Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities against Human Pathogens

  2022cited by this paper
• Metabolic reconstruction of the near complete microbiome of the model sponge Ianthella basta

  2022cited by this paper
• Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

  2022cited by this paper
• Global decline in capacity of coral reefs to provide ecosystem services

  2021cited by this paper
• A genomic view of the microbiome of coral reef demosponges

  2021cited by this paper
• Single-cell metabolite detection and genomics reveals uncultivated talented producer

  2021cited by this paper
• Genomic diversity and biosynthetic capabilities of sponge-associated chlamydiae

  2021cited by this paper
• Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals

  2021cited by this paper
• A roadmap for metagenomic enzyme discovery

  2021cited by this paper
• An Obligate Peptidyl Brominase Underlies the Discovery of Highly Distributed Biosynthetic Gene Clusters in Marine Sponge Microbiomes.

  2021cited by this paper
• Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality

  2021cited by this paper
• Naturally occurring fire coral clones demonstrate a genetic and environmental basis of microbiome composition

  2021cited by this paper
• Coral holobionts and biotechnology: from Blue Economy to coral reef conservation.

  2021cited by this paper
• An Interplay between Viruses and Bacteria Associated with the White Sea Sponges Revealed by Metagenomics

  2021cited by this paper
• Microbial diversity of the glass sponge Vazella pourtalesii in response to anthropogenic activities

  2020cited by this paper
• Draft Genome Sequences of Two Vibrio fortis Strains Isolated from Coral (Fungia sp.) from the Andaman Sea

  2020cited by this paper
• Characterization of a sponge microbiome using an integrative genome-centric approach

  2020cited by this paper
• Comparative genome-centric analysis reveals seasonal variation in the function of coral reef microbiomes

  2020cited by this paper
• Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network

  2020cited by this paper
• Deep-sea corals provide new insight into the ecology, evolution, and the role of plastids in widespread apicomplexan symbionts of anthozoans

  2020cited by this paper
• Insights into the cultured bacterial fraction of corals 1

  2020influential reference
• Deciphering Coral Disease Dynamics: Integrating Host, Microbiome, and the Changing Environment

  2020cited by this paper
• A genomic catalog of Earth’s microbiomes

  2020cited by this paper
• BiG-FAM: the biosynthetic gene cluster families database

  2020influential reference
• Coral Bleaching Phenotypes Associated With Differential Abundances of Nucleocytoplasmic Large DNA Viruses

  2020cited by this paper
• Viral ecogenomics across the Porifera

  2020cited by this paper
• BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

  2020cited by this paper
• Ecological and biotechnological importance of secondary metabolites produced by coral‐associated bacteria

  2020cited by this paper
• Metagenomic Exploration of the Marine Sponge Mycale hentscheli Uncovers Multiple Polyketide-Producing Bacterial Symbionts

  2020cited by this paper
• Genomic Blueprint of Glycine Betaine Metabolism in Coral Metaorganisms and Their Contribution to Reef Nitrogen Budgets

  2020cited by this paper
• Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries

  2020influential reference
• antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

  2019influential reference
• MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

  2019influential reference
• A genomic view of the reef-building coral Porites lutea and its microbial symbionts

  2019cited by this paper
• The Tara Pacific expedition—A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean

  2019influential reference
• A Phage Protein Aids Bacterial Symbionts in Eukaryote Immune Evasion.

  2019cited by this paper
• Charting the Complexity of the Marine Microbiome through Single-Cell Genomics.

  2019cited by this paper
• A computational framework to explore large-scale biosynthetic diversity

  2019cited by this paper
• GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

  2019influential reference
• Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

  2019influential reference
• MIBiG 2.0: a repository for biosynthetic gene clusters of known function

  2019influential reference
• Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera

  2019cited by this paper
• Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

  2018cited by this paper
• Draft Genome Sequence of Endozoicomonas acroporae Strain Acr-14T, Isolated from Acropora Coral

  2018cited by this paper
• Bioactive Secondary Metabolites from Octocoral-Associated Microbes—New Chances for Blue Growth

  2018cited by this paper
• Corals and Their Microbiomes Are Differentially Affected by Exposure to Elevated Nutrients and a Natural Thermal Anomaly

  2018cited by this paper
• Complete Genome Sequence of Dietzia sp. Strain WMMA184, a Marine Coral-Associated Bacterium

  2018cited by this paper
• Draft Genome Sequence of Labrenzia sp. Strain EL143, a Coral-Associated Alphaproteobacterium with Versatile Symbiotic Living Capability and Strong Halogen Degradation Potential

  2018cited by this paper
• Draft Genome Sequence of Marinomonas fungiae Strain AN44T (JCM 18476T), Isolated from the Coral Fungia echinata from the Andaman Sea

  2018cited by this paper
• Draft Genome Sequence of Sphingorhabdus sp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian Coral Eunicella labiata

  2018cited by this paper
• Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis

  2018cited by this paper
• ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

  2018cited by this paper
• A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

  2018influential reference
• “From Large-Scale Collections to the Potential Use of Genomic Techniques for Supply of Drug Candidates”

  2018cited by this paper
• eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

  2018influential reference
• Symbiotic Microbes from Marine Invertebrates: Driving a New Era of Natural Product Drug Discovery

  2017cited by this paper
• UpSetR: an R package for the visualization of intersecting sets and their properties

  2017influential reference
• Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges

  2017cited by this paper
• Unraveling the microbial processes of black band disease in corals through integrated genomics

  2017cited by this paper
• dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication

  2017influential reference
• Retrospective analysis of natural products provides insights for future discovery trends

  2017cited by this paper
• Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

  2017cited by this paper
• metaSPAdes: a new versatile metagenomic assembler.

  2017influential reference
• High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

  2017influential reference
• Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

  2017cited by this paper
• Metagenomic Assembly: Overview, Challenges and Applications

  2016cited by this paper
• Polytheonamide biosynthesis showcasing the metabolic potential of sponge-associated uncultivated 'Entotheonella' bacteria.

  2016cited by this paper
• Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

  2016cited by this paper
• Genomic Insights into Aquimarina sp. Strain EL33, a Bacterial Symbiont of the Gorgonian Coral Eunicella labiata

  2016cited by this paper
• Draft Genome Sequence of a Novel Luteimonas sp. Strain from Coral Mucus, Hawai‘i

  2016cited by this paper
• Draft Genome Sequence of Vibrio sp. Strain Evh12, a Bacterium Retrieved from the Gorgonian Coral Eunicella verrucosa

  2016cited by this paper
• NCBI prokaryotic genome annotation pipeline

  2016cited by this paper
• Genome sequencing of three bacteria associated to black band disease from a Colombian reef-building coral

  2016cited by this paper
• Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host

  2016cited by this paper
• Structure and function of the global ocean microbiome

  2015influential reference
• Species richness on coral reefs and the pursuit of convergent global estimates.

  2015influential reference
• Spongosine production by a Vibrio harveyi strain associated with the sponge Tectitethya crypta.

  2015cited by this paper
• Quantitative analysis of mouse pancreatic islet architecture by serial block-face SEM.

  2015cited by this paper
• Microbiome shifts and the inhibition of quorum sensing by Black Band Disease cyanobacteria

  2015cited by this paper
• Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata

  2015cited by this paper
• CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

  2015influential reference

• No citing papers are available for this paper.