Comparative analysis of the complete chloroplast genomes of critically endangered legumes (Dalbergia, Papilionoideae): insights into genome structure, phylogeny, and conservation implications

No abstract is available for this paper.

• Publication year

  2025

• Venue

  Plant Systematics and Evolution

• Publication date

  2025-03-27

• Fields of study

  Not labeled

• Identifiers
  DOI 10.1007/s00606-025-01942-5
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Comparative Plastome Analysis of Artocarpus Species in China: Insight Into Adaptive Evolution and Mutational Hotspot Regions

  2026cited by this paper
• Comparative chloroplast genome analysis reveals powerful barcodes for combatting illegal logging of CITES-listed threatened Asian rosewoods (Dalbergia, Leguminosae, Papilionoideae)

  2024influential reference
• Chloroplast Genomes Evolution and Phylogenetic Relationships of Caragana species

  2024cited by this paper
• Phylogenomics and plastome evolution of Indigofera (Fabaceae)

  2023cited by this paper
• Characterization of the complete chloroplast genome of Dalbergia congesta (Fabaceae), an endangered legume endemic to the Nilgiri Hills of Tamil Nadu, India

  2023influential reference
• Evaluation of spectral collection strategies for identification of Dalbergia spp. using handheld laser‐induced breakdown spectroscopy

  2023cited by this paper
• A DNA barcode reference library for CITES listed Malagasy Dalbergia species

  2023cited by this paper
• SSR identification and phylogenetic analysis in four plant species based on complete chloroplast genome sequences.

  2023cited by this paper
• Quantifying the illegal high-value rosewood trade and criminal trade networks in the Greater Mekong Region

  2023cited by this paper
• Use of a Portable Near Infrared Spectrometer for Wood Identification of Four Dalbergia Species from Madagascar

  2023cited by this paper
• Characterization of the complete chloroplast genome sequences of six Dalbergia species and its comparative analysis in the subfamily of Papilionoideae (Fabaceae)

  2022cited by this paper
• Comparative chloroplast genome analysis of Ficus (Moraceae): Insight into adaptive evolution and mutational hotspot regions

  2022cited by this paper
• Insights into phylogenetic divergence of Dalbergia (Leguminosae: Dalbergiae) from Mexico and Central America

  2022cited by this paper
• Comparative Analysis of Chloroplast Genomes of Dalbergia Species for Identification and Phylogenetic Analysis

  2022cited by this paper
• Plastome structure of 8 Calanthe s.l. species (Orchidaceae): comparative genomics, phylogenetic analysis

  2022cited by this paper
• Molecular phylogeny and systematic evaluation of the Caragana opulens species complex (Fabaceae, Papilionoideae) based on the molecular and morphological data

  2021cited by this paper
• Comparative Chloroplast Genomics of Sophora Species: Evolution and Phylogenetic Relationships in the Early-Diverging Legume Subfamily Papilionoideae (Fabaceae)

  2021cited by this paper
• Comparative Analyses of 35 Complete Chloroplast Genomes from the Genus Dalbergia (Fabacaeae) and the Identification of DNA Barcodes for Tracking Illegal Logging and Counterfeit Rosewood

  2021influential reference
• Conservation genetics of the critically endangered Siamese rosewood (Dalbergia cochinchinensis): recommendations for management and sustainable use

  2020influential reference
• Characteristics of the completed chloroplast genome sequence of Xanthium spinosum: comparative analyses, identification of mutational hotspots and phylogenetic implications

  2020cited by this paper
• Plastome phylogenomics of Cephalotaxus (Cephalotaxaceae) and allied genera

  2020cited by this paper
• Plastid phylogenomic insights into the evolution of subfamily Dialioideae (Leguminosae)

  2020cited by this paper
• New Insights Into the Plastome Evolution of the Millettioid/Phaseoloid Clade (Papilionoideae, Leguminosae)

  2020cited by this paper
• Comparative plastomic analysis and insights into the phylogeny of Salvia (Lamiaceae)

  2020cited by this paper
• Comparative analysis of complete plastid genome reveals powerful barcode regions for identifying wood of Dalbergia odorifera and D. tonkinensis (Leguminosae)

  2020influential reference
• Comparative Analyses of Five Complete Chloroplast Genomes from the Genus Pterocarpus (Fabacaeae)

  2020cited by this paper
• ycf1-ndhF genes, the most promising plastid genomic barcode, sheds light on phylogeny at low taxonomic levels in Prunus persica

  2020cited by this paper
• Region

  2020cited by this paper
• Gaultheria longibracteolata, an alternative source of wintergreen oil.

  2020cited by this paper
• Gene Loss and Evolution of the Plastome

  2019cited by this paper
• Uplisting of Malagasy precious woods critical for their survival

  2019cited by this paper
• PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes

  2019cited by this paper
• Comparative Chloroplast Genomics at Low Taxonomic Levels: A Case Study Using Amphilophium (Bignonieae, Bignoniaceae)

  2019cited by this paper
• Testing and using complete plastomes and ribosomal DNA sequences as the next generation DNA barcodes in Panax (Araliaceae)

  2019cited by this paper
• Characterization of the complete chloroplast genome sequence of Dalbergia species and its phylogenetic implications

  2019influential reference
• Siberian larch (Larix sibirica Ledeb.) chloroplast genome and development of polymorphic chloroplast markers

  2019cited by this paper
• Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide

  2019cited by this paper
• Species Identification of Dracaena Using the Complete Chloroplast Genome as a Super-Barcode

  2019cited by this paper
• Twelve complete chloroplast genomes of wild peanuts: great genetic resources and a better understanding of Arachis phylogeny

  2019cited by this paper
• A strategy for developing high-resolution DNA barcodes for species discrimination of wood specimens using the complete chloroplast genome of three Pterocarpus species

  2019cited by this paper
• Authentication of traditional Chinese medicinal herb “Gusuibu” by DNA-based molecular methods

  2019cited by this paper
• An updated checklist of the Mexican species of Dalbergia (Leguminosae) to aid in its conservation efforts

  2019cited by this paper
• OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes

  2019influential reference
• PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies

  2019influential reference
• IRscope: an online program to visualize the junction sites of chloroplast genomes

  2018cited by this paper
• ­­­­­­A new species of Dalbergia (Fabaceae: Dalbergieae) from Tamil Nadu, India

  2018cited by this paper
• Potential field-deployable NIRS identification of seven Dalbergia species listed by CITES

  2018cited by this paper
• Plastid Genome Evolution in the Early-Diverging Legume Subfamily Cercidoideae (Fabaceae)

  2018cited by this paper
• GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

  2018cited by this paper
• Plastome organization, genome-based phylogeny and evolution of plastid genes in Podophylloideae (Berberidaceae).

  2018cited by this paper
• ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates

  2017cited by this paper
• Plant DNA barcodes: Applications today and in the future

  2017cited by this paper
• The phylogenetic analysis of Dalbergia (Fabaceae: Papilionaceae) based on different DNA barcodes

  2017influential reference
• MISA-web: a web server for microsatellite prediction

  2017cited by this paper
• The complete chloroplast genome sequence of tung tree (Vernicia fordii): Organization and phylogenetic relationships with other angiosperms

  2017influential reference
• The complete chloroplast genome sequence of tung tree (Vernicia fordii): Organization and phylogenetic relationships with other angiosperms

  2017influential reference
• Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species

  2016cited by this paper
• MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

  2016cited by this paper
• World wildlife crime report 2016: trafficking in protected species

  2016influential reference
• Transferability of microsatellite markers across six Dalbergia (Fabaceae) species and their characterization for Dalbergia miscolobium

  2016cited by this paper
• DNA Barcoding of Malagasy Rosewoods: Towards a Molecular Identification of CITES-Listed Dalbergia Species

  2016cited by this paper
• Chloroplast genomes: diversity, evolution, and applications in genetic engineering

  2016cited by this paper
• Bandage: interactive visualization of de novo genome assemblies

  2015cited by this paper
• A Comparative Analysis of Whole Plastid Genomes from the Apiales: Expansion and Contraction of the Inverted Repeat, Mitochondrial to Plastid Transfer of DNA, and Identification of Highly Divergent Noncoding Regions

  2015cited by this paper
• Two New Potential Barcodes to Discriminate Dalbergia Species

  2015cited by this paper
• The Use of DNA Barcoding in Identification and Conservation of Rosewood (Dalbergia spp.)

  2015influential reference
• FORENSIC ANALYSIS OF CITES-PROTECTED DALBERGIA TIMBER FROM THE AMERICAS

  2015cited by this paper
• IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

  2014cited by this paper
• Genotyping microsatellites in next-generation sequencing data

  2014cited by this paper
• First molecular phylogeny of the pantropical genus Dalbergia: implications for infrageneric circumscription and biogeography

  2013cited by this paper
• MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

  2013cited by this paper
• Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

  2013cited by this paper
• Complete chloroplast genome of the genus Cymbidium: lights into the species identification, phylogenetic implications and population genetic analyses

  2013cited by this paper
• Ultrafast Approximation for Phylogenetic Bootstrap

  2013cited by this paper
• Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

  2012influential reference
• Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

  2012cited by this paper
• Primer3—new capabilities and interfaces

  2012influential reference
• Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage.

  2011cited by this paper
• Next-generation hybridization and introgression

  2011cited by this paper
• Genetic diversity on the tropical rare wood species of Dalbergia in Vietnam revealed by inter-simple sequence repeat (ISSR) markers

  2011cited by this paper
• CITES Designation for Endangered Rosewood in Madagascar

  2010influential reference
• BLAST+: architecture and applications

  2009cited by this paper
• The Madagascar rosewood massacre

  2009cited by this paper
• Barcoding of Plants and Fungi

  2009cited by this paper
• DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

  2009influential reference
• A DNA barcode for land plants

  2009cited by this paper
• A synopsis of the genus Dalbergia (Fabaceae: Dalbergieae) in Brazil

  2008cited by this paper
• The CGView Server: a comparative genomics tool for circular genomes

  2008influential reference
• Evaluation of rice and sugarcane SSR markers for phylogenetic and genetic diversity analyses in bamboo.

  2008cited by this paper
• An update on chloroplast genomes

  2008cited by this paper
• A Two-Locus Global DNA Barcode for Land Plants: The Coding rbcL Gene Complements the Non-Coding trnH-psbA Spacer Region

  2007cited by this paper
• A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats.

  2007cited by this paper
• Use of DNA barcodes to identify flowering plants.

  2005cited by this paper
• The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs

  2005cited by this paper
• U.S. forest products annual market review and prospects, 2005-2009

  2004cited by this paper
• Complete nucleotide sequence of the sugarcane (Saccharum officinarum) chloroplast genome: a comparative analysis of four monocot chloroplast genomes.

  2004cited by this paper
• Mauve: multiple alignment of conserved genomic sequence with rearrangements.

  2004influential reference
• Evaluation of genetic relationships in Dalbergia species using RAPD markers

  2003cited by this paper
• Publisher's Note

  2003cited by this paper
• Chloroplast evolution: secondary symbiogenesis and multiple losses.

  2002cited by this paper

• Molecular evolution and comparative genomics of highly threatened Malagasy rosewoods (Dalbergia, Fabaceae) unveil genome diversity and a fine-scale evolutionary framework

  2026cites this paper
• Comparative Chloroplast Genome Analyses Reveal a Fine-Scale Phylogenetic Framework and Cryptic Diversity in the Fagopyrum dibotrys Complex (Polygonaceae).

  2026cites this paper
• Rosewoods at crossroads: A modern paradigm to secure the survival of the world's most trafficked wild species

  2025cites this paper
• Plastome evolution in the Caesalpinia group (Caesalpinioideae, Fabaceae): Comparative genomics reveals genome dynamics, phylogenetic insights and adaptive evolution

  2025cites this paper
• Recommendations to Reinforce the Implementation of China's Updated National Key Protected Wild Plants List

  2025cites this paper