Nitrogen Cycling and Community Structure of Proteobacterial β-Subgroup Ammonia-Oxidizing Bacteria within Polluted Marine Fish Farm Sediments

No abstract is available for this paper.

• Publication year

  1999

• Venue

  Applied and Environmental Microbiology

• Publication date

  1999-01-01

• Fields of study

  Biology, Medicine, Environmental Science

• Identifiers
  DOI 10.1128/AEM.65.1.213-220.1999PMID 9872782PMCID PMC91005
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Analysis of β-Subgroup Proteobacterial Ammonia Oxidizer Populations in Soil by Denaturing Gradient Gel Electrophoresis Analysis and Hierarchical Phylogenetic Probing

  1998influential reference
• Anaerobic ammonia oxidation with nitrogen dioxide by Nitrosomonas eutropha

  1997cited by this paper
• Anaerobic ammonia oxidation with nitrogen dioxide by Nitrosomonas eutropha.

  1997cited by this paper
• Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments

  1997cited by this paper
• Molecular diversity of soil and marine 16S rRNA gene sequences related to beta-subgroup ammonia-oxidizing bacteria

  1996influential reference
• Nitrogen cycling in sediments with different oraanic loadina

  1995cited by this paper
• Phylogenetic Analysis of Seven New Isolates of Ammonia-Oxidizing Bacteria Based on 16S rRNA Gene Sequences

  1995cited by this paper
• Transformations of Aromatic Compounds by Nitrosomonas europaea

  1994cited by this paper
• The Ribosomal Database Project.

  1994cited by this paper
• Bacterial nitrification and denitrification rates in the Rhone River plume (northwestern Mediterranean Sea)

  1994cited by this paper
• Molecular analysis of enrichment cultures of marine ammonia oxidisers.

  1994cited by this paper
• The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by analysis of 16S ribosomal RNA gene sequences.

  1993cited by this paper
• Environmental distribution of organic waste from a marine fish farm

  1993cited by this paper
• Fish farming and the environment.

  1993cited by this paper
• Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

  1993cited by this paper
• Effect of organic loading on nitrification and denitrification in a marine sediment microcosm

  1993cited by this paper
• Inhibition of Ammonia Oxidation in Nitrosomonas europaea by Sulfur Compounds: Thioethers Are Oxidized to Sulfoxides by Ammonia Monooxygenase

  1993cited by this paper
• Chemical fluxes and mass balances in a marine fishcagefarm. IV Nitrogen

  1992cited by this paper
• Nitrite oxidoreductase from Nitrobacter hamburgensis: redox centers and their catalytic role

  1992cited by this paper
• Comparison of methods for measuring denitrifying activity in marine-sediments from the western mediterranean coast

  1992cited by this paper
• Model of nitrification and denitrification in marine sediments

  1992cited by this paper
• Chemical fluxes and mass balances in a marine fish cage farm. II Phosphorus

  1991cited by this paper
• Chemical fluxes and mass balances in a marine fish cage farm IV. Nitrogen

  1990cited by this paper
• Chemical fluxes and mass balances for a marine fish cage farm

  1990cited by this paper
• Physiology, biochemistry, and specific inhibitors of CH4, NH4+, and CO oxidation by methanotrophs and nitrifiers

  1989cited by this paper
• Attachment of a 40-base-pair G + C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes.

  1989cited by this paper
• Effects of Light and CO on the Survival of a Marine Ammonium-Oxidizing Bacterium during Energy Source Deprivation

  1988cited by this paper
• Effects of sea cage salmon farming on sediment nitrification and dissimilatory nitrate reductions

  1988influential reference
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.

  1987cited by this paper
• Survival of a marine ammonia oxidizer under energy-source deprivation

  1985cited by this paper
• Diffusive boundary layers and the oxygen uptake of sediments and detritus1

  1985cited by this paper
• A manual of chemical and biological methods for seawater analysis

  1984cited by this paper
• The phylogeny of purple bacteria: the alpha subdivision.

  1984cited by this paper
• Inhibition of Chemoautotrophic Nitrification by Sodium Chlorate and Sodium Chlorite: a Reexamination

  1983cited by this paper
• Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.

  1981cited by this paper
• Effects of temperature, ph, salinity, and inorganic nitrogen on the rate of ammonium oxidation by nitrifiers isolated from wetland environments

  1980cited by this paper
• Evolution of Protein Molecules

  1979cited by this paper
• Microtechnique for Most-Probable-Number Analysis

  1977cited by this paper
• CHAPTER 24 – Evolution of Protein Molecules

  1969cited by this paper
• NUTRIENT LIMITATION IN THE SEA: DYNAMICS, IDENTIFICATION, AND SIGNIFICANCE1

  1967cited by this paper
• Mammalian protein metabolism

  1964cited by this paper
• Nitrifying Bacteria.

  year unknowncited by this paper

• An approach for quantifying the influence of fish farm waste on hard-bottom habitats.

  2025cites this paper
• Diversity of rhizosphere microbial communities and environmental variables in wild and cultivated Scutellaria baicalensis Georgi and their effect on flavonoid

  2025cites this paper
• Impacts on microbial communities in sediments by aquaculture farming during one salmon cycle

  2024cites this paper
• Effects of Penaeus japonicus stocking density on water quality and bacterial community structure in water in an integrated multi-trophic aquaculture (IMTA) system

  2023cites this paper
• Fish and Shellfish Aquaculture Impact on the Sediment Bacterial Communities in Xiangshan Bay, China

  2023cites this paper
• Composition and functionality of bacterioplankton communities in marine coastal zones adjacent to finfish aquaculture

  2022cites this paper
• Benthic microbial biogeography along the continental shelf shaped by substrates from the Changjiang River plume

  2022cites this paper
• Biogeochemical impacts of fish farming on coastal sediments: Insights into the functional role of cable bacteria

  2022cites this paper
• Composition and functionality of bacterioplankton communities in marine coastal zones adjacent to finfish aquaculture.

  2022cites this paper
• A Substrate-Independent Benthic Sampler (SIBS) for Hard and Mixed-Bottom Marine Habitats: A Proof-of-Concept Study

  2021cites this paper
• Global Trends of Benthic Bacterial Diversity and Community Composition Along Organic Enrichment Gradients of Salmon Farms

  2021cites this paper
• Short-term changes in microbial communities in the water column around the fish farm in the Bay of Piran

  2021cites this paper
• Comparative analysis of microbial communities between water and sediment in Laoshan Bay marine ranching with varied aquaculture activities.

  2021cites this paper
• Iron-reducing - and -proteobacteria isolated from laboratory-scaled heterotrophic feammox bioreactor

  2021cites this paper
• Ecological Perspectives on Soil Microbial Community Involved in Nitrogen Cycling

  2021cites this paper
• Effects of fish farm activities on the sponge Weberella bursa, and its associated microbiota

  2021cites this paper
• Seasonal Variation of Microbial Diversity of Coastal Sediment in Tongyeong, South Korea, Using 16S rRNA Gene Amplicon Sequencing

  2021cites this paper
• Molecular characterization of bacteria and archaea in a bioaugmented zero-water exchange shrimp pond

  2021cites this paper
• A long-term pilot-scale algal cultivation on power plant flue gas – Cultivation stability and biomass accumulation

  2020cites this paper
• Microbial Nitrogen Cycling in Antarctic Soils

  2020cites this paper
• Microbial Community Composition and Function in Sediments from the Pearl River Mouth Basin

  2020cites this paper
• Distribution and Community Composition of Ammonia-Oxidizing Archaea and Bacteria in Coastal Sediments in Response to Sediment Material Gradients at Sendai Bay, Japan

  2019cites this paper
• Marine Metagenomics: Technological Aspects and Applications

  2019cites this paper
• Nitrogen cycling during wastewater treatment.

  2019cites this paper
• Molecular techniques applied to investigations of abundance of the ammonia oxidizing bacteria and ammonia oxidizing archaea microorganisms in the environment

  2019cites this paper
• Investigating benthic impacts at salmon farms using eddy covariance measurements of benthic oxygen fluxes

  2019cites this paper
• Insights into the diversity and metabolic function of bacterial communities in sediments from Chilean salmon aquaculture sites

  2018cites this paper
• Dynamics of the bacterial community in a channel catfish nursery pond with a cage-pond integration system.

  2018cites this paper
• Development and preliminary validation of a multi-trophic metabarcoding biotic index for monitoring benthic organic enrichment

  2018cites this paper
• Fishmeal Application Induces Antibiotic Resistance Gene Propagation in Mariculture Sediment.

  2017cites this paper
• Effect of Sewage and Industrial Effluents on Bacterial and Archaeal Communities of Creek Sediments in the Taihu Basin

  2017cites this paper
• Novel soil fumigation strategy suppressed plant-parasitic nematodes associated with soil nematode community alterations in the field

  2017cites this paper
• Characteristics of Sediment Bacterial Community in Response to Environmental Impacts in a Sewage Polluted River

  2016cites this paper
• Ammonia Oxidizing Bacteria in Industrial Waste Water

  2016cites this paper
• Exploring a soil fumigation strategy based on ammonium bicarbonate to control Fusarium wilts of cucurbits

  2015cites this paper
• The effect of human settlement on the abundance and community structure of ammonia oxidizers in tropical stream sediments

  2015cites this paper
• The response of nitrifying microbial assemblages to ammonium (NH4+) enrichment from salmon farm activities in a northern Chilean Fjord

  2015cites this paper
• Ammonia‐oxidizing Bacteria of the N itrosospira cluster 1 dominate over ammonia‐oxidizing Archaea in oligotrophic surface sediments near the South Atlantic Gyre

  2015cites this paper
• The Lithoautotrophic Ammonia‐Oxidizing Bacteria

  2015cites this paper
• Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high-throughput sequencing.

  2015cites this paper
• Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758)

  2015cites this paper
• From inocula to biological reactors: molecular characterization of N-cycle bacterial assemblages in a PANAMMOX process

  2015cites this paper
• Exploited Application of Denaturing Gradient Gel Electrophoresis in Analysis of Ammonia Oxidizing Bacterial Community Structure

  2014cites this paper
• Bacterial community structure and its regulating factors in the intertidal sediment along the Liaodong Bay of Bohai Sea, China.

  2014cites this paper
• Molecular diversity of the ammonia-oxidizing bacteria community in disused tin-mining ponds located within Kampar, Perak, Malaysia

  2014cites this paper
• Niche Differentiation of Ammonia-Oxidising Archaea (AOA) and Bacteria (AOB) in Response to Paper and Pulp Mill Effluent

  2014cites this paper
• Nutrient-Enriched Habitats in Crete Consistent across Different of Specific Bacterioplankton Groups Is The Pattern of Change in the Abundances

  2014cites this paper
• The ecological dichotomy of ammonia-oxidizing archaea and bacteria in the hyper-arid soils of the Antarctic Dry Valleys

  2014cites this paper
• Community structure changes in sediment bacterial communities along an organic enrichment gradient associated with fish farming

  2014cites this paper
• Diversity of nitrogen-fixing, ammonia-oxidizing, and denitrifying bacteria in biological soil crusts of a revegetation area in Horqin Sandy Land, Northeast China

  2014cites this paper
• Correlation of seasonal nitrification failure and ammonia-oxidizing community dynamics in a wastewater treatment plant treating water from a saline thermal spa

  2014cites this paper
• The history of aerobic ammonia oxidizers: from the first discoveries to today

  2014cites this paper
• Comunidade bacteriana em viveiros de aquicultura

  2014cites this paper
• Influence of hydraulic retention time on partial nitrification of continuous-flow aerobic granular-sludge reactor

  2014cites this paper
• Communities of sediment ammonia-oxidizing bacteria along a coastal pollution gradient in the East China Sea.

  2014cites this paper
• The Pattern of Change in the Abundances of Specific Bacterioplankton Groups Is Consistent across Different Nutrient-Enriched Habitats in Crete

  2014cites this paper
• Diversité taxonomique et fonctionnelle de la communauté bactérienne d'une lagune côtière aux Îles-de-la-Madeleine, Golfe du Saint-Laurent, Canada

  2014cites this paper
• Impacts of Mariculture on the Diversity of Bacterial Communities within Intertidal Sediments in the Northeast of China

  2013cites this paper
• The normal operating range of soil functioning

  2013cites this paper
• Impact of biocontrol agents Pseudomonas fluorescens 2P24 and CPF10 on the bacterial community in the cucumber rhizosphere

  2013cites this paper
• Molecular diversity of the ammonia-oxidizing bacteria community in disused tin-mining ponds located within Kampar, Perak, Malaysia

  2013cites this paper
• Changes of Nitrifying Bacteria Depending on the Presence and Absence of Organic Pollutant in Nak-Dong River

  2013cites this paper
• Characterization of the bacterial community in the sediment of a brackish lake with oyster aquaculture.

  2013cites this paper
• Characterization of soil ecosystems in Costa Rica using microbial community metrics

  2012cites this paper
• Effects of fertilisation with biogas residues on crop yield, soil microbiology and greenhouse gas emissions

  2012cites this paper
• Molecular diversity of ammonia and methane oxidizing bacteria in disused tin-mining ponds located within Kampar, Perak

  2012cites this paper
• Adaptation of nitrifying microbial biomass to nickel in batch incubations

  2012cites this paper
• Fluctuations in Ammonia Oxidizing Communities Across Agricultural Soils are Driven by Soil Structure and pH

  2012cites this paper
• FEATURES NITROGEN METABOLISM FISH AND METHODS NEUTRALIZE THE PRODUCT OF NITROGEN METABOLISM FISH AQUACULTURE

  2011cites this paper
• Differences in bacterial community composition in Baltic Sea sediment in response to fish farming

  2011cites this paper
• Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil.

  2011cites this paper
• Abundance of sulphate-reducing bacteria in fish farm sediments along the coast of Japan and South Korea

  2011cites this paper
• Interpreting the temperature-induced response of ammonia oxidizing microorganisms in soil using nitrogen isotope fractionation

  2011cites this paper
• Ecology of nitrification in oil refinery wastewater treatment systems

  2011cites this paper
• Anthropogenic perturbations in marine microbial communities.

  2011influential citation
• The phylogenetic affiliation of an uncultured population of ammonia-oxidizing bacteria harboring environmental sequences of amoA cluster-3.

  2011cites this paper
• Molecular characterization of sediment bacterial communities affected by fish farming

  2011cites this paper
• Comparative effect of temperature on biofilm formation in natural and modified marine environment

  2010cites this paper
• Activity and Composition of Ammonia-Oxidizing Bacteria in an Aquic Brown Soil as Influenced by Land Use and Fertilization

  2010cites this paper
• Diversity, Abundance, and Spatial Distribution of Sediment Ammonia-Oxidizing Betaproteobacteria in Response to Environmental Gradients and Coastal Eutrophication in Jiaozhou Bay, China

  2010cites this paper
• On the rocks: the microbiology of Antarctic Dry Valley soils

  2010cites this paper
• Quantitative Assessment of Ammonia-Oxidizing Bacterial Communities in the Epiphyton of Submerged Macrophytes in Shallow Lakes

  2010cites this paper
• Abundance and community structure of sphingomonads in leaf residues and nearby bulk soil.

  2010cites this paper
• Abundance and Community Structure of Sphingomonads in Leaf Residues and Nearby Bulk Soil

  2010cites this paper
• Heterotrophic bacteria of the Dapeng Bay in the South China Sea: community structure, abundance, and the relationships of culturablity with environmental factors

  2010cites this paper
• Landscape and smaller-scale effects of lugworm ( Arenicola marina ) deposit feeding on benthic bacterial assemblages

  2010cites this paper
• Benthic nitrification in mangrove ecosystems

  2010cites this paper
• Seasonal changes in abundance of ammonia-oxidizing archaea and ammonia-oxidizing bacteria and their nitrification in sand of an eelgrass zone.

  2009cites this paper
• Comparison of bacterial communities in fish farm sediments along an organic enrichment gradient

  2009cites this paper
• Bacterial Diversity Analysis of Huanglongbing Pathogen-Infected Citrus using PhyloChips and 16S rDNA Clone Library Sequencing

  2009cites this paper
• Effects of organic perturbation on marine sediment betaproteobacterial ammonia oxidizers and on benthic nitrogen biogeochemistry

  2009influential citation
• Bacterial Diversity Analysis of Huanglongbing Pathogen-Infected Citrus, Using PhyloChip Arrays and 16S rRNA Gene Clone Library Sequencing

  2009cites this paper
• Seasonal Changes in Abundance of Ammonia-Oxidizing Archaea and Ammonia- Oxidizing Bacteria and Their Nitrification in Sand of an Eelgrass Zone

  2009cites this paper
• Nitrifyers in constructed wetlands treating landfill leachates

  2008cites this paper
• Nitrification in Marine Systems

  2008cites this paper
• Effect of Different Fertilizer Treatments on Quantity of Soil Microbes and Structure of Ammonium Oxidizing Bacterial Community in a Calcareous Purple Paddy Soil

  2008cites this paper
• Using Bayesian networks to examine consistent trends in fish farm benthic impact studies

  2008cites this paper
• Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary.

  2008cites this paper
• Comparison of actinobacterial diversity in Marion Island terrestrial habitats

  2008cites this paper
• Community structure of β-Proteobacterial ammonia-oxidizing bacteria in prawn farm sediment

  2008cites this paper