Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks.

No abstract is available for this paper.

• Publication year

  2003

• Venue

  Developmental Biology

• Publication date

  2003-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1016/S0012-1606(03)00278-1PMID 12941621
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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  2002cited by this paper
• Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin.

  2002cited by this paper
• New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization.

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• A Genomic Regulatory Network for Development

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• brachyury Target genes in the early sea urchin embryo isolated by differential macroarray screening.

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• Modeling DNA sequence-based cis-regulatory gene networks.

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• Deconstructing the transcriptional circuitry of development.

  2002cited by this paper
• A regulatory gene network that directs micromere specification in the sea urchin embryo.

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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2001cited by this paper
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  2000cited by this paper
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  2000cited by this paper
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  2000cited by this paper
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  2000cited by this paper
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  2000cited by this paper
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  1999cited by this paper
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  1999cited by this paper
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  1999cited by this paper
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  1999cited by this paper
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  1999cited by this paper
• SpSoxB1, a maternally encoded transcription factor asymmetrically distributed among early sea urchin blastomeres.

  1999influential reference
• Functional organization of DNA elements regulating SM30α, a spicule matrix gene of sea urchin embryos

  1999cited by this paper
• Requirement of SpOtx in cell fate decisions in the sea urchin embryo and possible role as a mediator of beta-catenin signaling.

  1999cited by this paper
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  1999cited by this paper
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  1999cited by this paper
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  1999cited by this paper
• The human dead ringer/bright homolog, DRIL1: cDNA cloning, gene structure, and mapping to D19S886, a marker on 19p13.3 that is strictly linked to the Peutz-Jeghers syndrome.

  1998cited by this paper
• Specification of cell fate in the sea urchin embryo: summary and some proposed mechanisms.

  1998cited by this paper
• Late Specification of Veg1Lineages to Endodermal Fate in the Sea Urchin Embryo

  1998cited by this paper
• Green Fluorescent Protein in the sea urchin: new experimental approaches to transcriptional regulatory analysis in embryos and larvae.

  1997cited by this paper
• Two Otx proteins generated from multiple transcripts of a single gene in Strongylocentrotus purpuratus.

  1997cited by this paper
• Identification and localization of a sea urchin Notch homologue: insights into vegetal plate regionalization and Notch receptor regulation.

  1997cited by this paper
• Short-range cell-cell signals control ectodermal patterning in the oral region of the sea urchin embryo.

  1997cited by this paper
• Skeletal morphogenesis in the sea urchin embryo: regulation of primary mesenchyme gene expression and skeletal rod growth by ectoderm-derived cues.

  1997cited by this paper
• SpMyb functions as an intramodular repressor to regulate spatial expression of CyIIIa in sea urchin embryos.

  1997cited by this paper
• A fate map of the vegetal plate of the sea urchin (Lytechinus variegatus) mesenchyme blastula.

  1996cited by this paper
• Characterization of the dead ringer gene identifies a novel, highly conserved family of sequence-specific DNA-binding proteins

  1996cited by this paper
• Expression of spicule matrix protein gene SM30 in embryonic and adult mineralized tissues of sea urchin Hemicentrotus pulcherrimus †

  1996cited by this paper
• Micromeres are required for normal vegetal plate specification in sea urchin embryos.

  1995cited by this paper
• Expression cloning of Siamois, a Xenopus homeobox gene expressed in dorsal-vegetal cells of blastulae and able to induce a complete secondary axis.

  1995cited by this paper
• The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: a B cell-specific trans-activator that describes a new DNA-binding protein family.

  1995cited by this paper
• SpZ12-1, a negative regulator required for spatial control of the territory-specific CyIIIa gene in the sea urchin embryo.

  1995cited by this paper
• Characterization of the SpHE promoter that is spatially regulated along the animal-vegetal axis of the sea urchin embryo.

  1995cited by this paper
• Autonomous and non-autonomous differentiation of ectoderm in different sea urchin species.

  1995cited by this paper
• Structure, expression, and extracellular targeting of PM27, a skeletal protein associated specifically with growth of the sea urchin larval spicule.

  1995cited by this paper
• Cis-regulatory control of the SM50 gene, an early marker of skeletogenic lineage specification in the sea urchin embryo.

  1995cited by this paper
• Orthopedia, a novel homeobox-containing gene expressed in the developing CNS of both mouse and Drosophila.

  1994cited by this paper
• BRANCH SUPPORT AND TREE STABILITY

  1994cited by this paper
• Ligand-dependent stimulation of introduced mammalian brain receptors alters spicule symmetry and other morphogenetic events in sea urchin embryos.

  1994cited by this paper
• Skeletal pattern is specified autonomously by the primary mesenchyme cells in sea urchin embryos.

  1994cited by this paper
• Whole mount in situ hybridization shows Endo 16 to be a marker for the vegetal plate territory in sea urchin embryos.

  1993cited by this paper
• Cell-cell interactions regulate skeleton formation in the sea urchin embryo.

  1993cited by this paper
• A complete second gut induced by transplanted micromeres in the sea urchin embryo.

  1993cited by this paper
• Pattern formation during gastrulation in the sea urchin embryo.

  1992cited by this paper
• Cell interactions and mesodermal cell fates in the sea urchin embryo.

  1992cited by this paper
• Commitment along the dorsoventral axis of the sea urchin embryo is altered in response to NiCl2.

  1992cited by this paper
• Characterization and expression of a gene encoding a 30.6-kDa Strongylocentrotus purpuratus spicule matrix protein.

  1991cited by this paper
• Differential stability of expression of similarly specified endogenous and exogenous genes in the sea urchin embryo.

  1991cited by this paper
• The corrected structure of the SM50 spicule matrix protein of Strongylocentrotus purpuratus.

  1991cited by this paper
• The regulation of primary mesenchyme cell patterning.

  1990cited by this paper
• Regulatory elements from the related spec genes of Strongylocentrotus purpuratus yield different spatial patterns with a lacZ reporter gene.

  1990cited by this paper
• Promoter structure and protein sequence of msp130, a lipid-anchored sea urchin glycoprotein.

  1990cited by this paper
• Target recognition by the archenteron during sea urchin gastrulation.

  1990cited by this paper
• Range and stability of cell fate determination in isolated sea urchin blastomeres.

  1990cited by this paper
• Temporal and spatial transcriptional regulation of the aboral ectoderm‐specific spec genes during sea urchin embryogenesis

  1990cited by this paper
• Early inductive interactions are involved in restricting cell fates of mesomeres in sea urchin embryos.

  1989cited by this paper
• The oral-aboral axis of a sea urchin embryo is specified by first cleavage.

  1989cited by this paper
• Cell lineage conversion in the sea urchin embryo.

  1988cited by this paper
• A regulatory domain that directs lineage-specific expression of a skeletal matrix protein gene in the sea urchin embryo.

  1988cited by this paper
• Gene activity in early development. Third edition: By E. H. Davidson. Orlando, Florida: Academic Press. (1986). 670 pp. $49.50

  1987cited by this paper
• A lineage-specific gene encoding a major matrix protein of the sea urchin embryo spicule. II. Structure of the gene and derived sequence of the protein.

  1987cited by this paper
• A lineage-specific gene encoding a major matrix protein of the sea urchin embryo spicule. I. Authentication of the cloned gene and its developmental expression.

  1987cited by this paper
• The regulation of primary mesenchyme cell migration in the sea urchin embryo: transplantations of cells and latex beads.

  1986cited by this paper
• The mechanisms and mechanics of archenteron elongation during sea urchin gastrulation

  1986cited by this paper
• Gastrulation in the sea urchin embryo is accompanied by the rearrangement of invaginating epithelial cells.

  1985cited by this paper
• Introduction of cloned DNA into sea urchin egg cytoplasm: replication and persistence during embryogenesis.

  1985cited by this paper
• Sequential expression of germ-layer specific molecules in the sea urchin embryo.

  1985cited by this paper
• Structure of the Spec1 gene encoding a major calcium-binding protein in the embryonic ectoderm of the sea urchin, Strongylocentrotus purpuratus.

  1985cited by this paper
• Primary Invagination of the Vegetal Plate During Sea Urchin Gastrulation

  1984cited by this paper
• Gene activity in early development

  1968cited by this paper

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  2017cites this paper
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  2016cites this paper
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  2016cites this paper
• CURRICULUM VITAE PERSONAL INFORMATION: Name:

  2015cites this paper
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  2014cites this paper
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  2014cites this paper
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  2014cites this paper
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  2013cites this paper
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  2013cites this paper
• Comparative Developmental Transcriptomics of Echinoderms

  2012cites this paper
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  2012cites this paper
• The genomic regulatory control of skeletal morphogenesis in the sea urchin

  2012cites this paper
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  2011cites this paper
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  2011cites this paper
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  2011cites this paper
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  2011cites this paper
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  2010cites this paper
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  2010cites this paper
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  2006cites this paper
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  2006cites this paper
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  2006influential citation
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  2006cites this paper
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  2005influential citation
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  2005cites this paper
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  2005cites this paper
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  2005cites this paper
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  2005cites this paper
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  2004influential citation
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  2004cites this paper
• Gene regulatory network analysis in sea urchin embryos.

  2004cites this paper
• Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene

  2004influential citation
• SpHnf6, a transcription factor that executes multiple functions in sea urchin embryogenesis.

  2004cites this paper
• Role of the ERK-mediated signaling pathway in mesenchyme formation and differentiation in the sea urchin embryo.

  2004cites this paper
• Molecular genetic approaches to studying fertilization in model systems.

  2004cites this paper
• Developmental gene network analysis.

  2003cites this paper
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  2003cites this paper
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  2001cites this paper