Quantitative characterization of genetic parts and circuits for plant synthetic biology

No abstract is available for this paper.

• Publication year

  2015

• Venue

  Nature Methods

• Publication date

  2015-11-16

• Fields of study

  Biology, Medicine, Engineering

• Identifiers
  DOI 10.1038/nmeth.3659PMID 26569598
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

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• Arabidopsis Ovate Family Proteins, a Novel Transcriptional Repressor Family, Control Multiple Aspects of Plant Growth and Development

  2011cited by this paper
• A novel group of transcriptional repressors in Arabidopsis.

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  2009cited by this paper
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  2008cited by this paper
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  2007cited by this paper
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  2007cited by this paper
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  2006cited by this paper
• An Introduction to Systems Biology

  2006cited by this paper
• pOp6/LhGR: a stringently regulated and highly responsive dexamethasone-inducible gene expression system for tobacco.

  2005cited by this paper
• Programmed population control by cell–cell communication and regulated killing

  2004cited by this paper
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  2002cited by this paper
• Repression Domains of Class II ERF Transcriptional Repressors Share an Essential Motif for Active Repression

  2001cited by this paper
• Elimination of transcriptional interference between tandem genes in plant cells.

  2001cited by this paper
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  2000cited by this paper
• Construction of a genetic toggle switch in Escherichia coli

  2000cited by this paper
• Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

  1998cited by this paper
• A glucocorticoid-mediated transcriptional induction system in transgenic plants.

  1997cited by this paper
• Overview of the yeast genome.

  1997cited by this paper
• Synthesis and turnover of photosystem II reaction center protein D1. Ribosome pausing increases during chloroplast development.

  1994cited by this paper
• DNA binding properties of the LexA repressor.

  1991cited by this paper
• Characteristics of a strong promoter from figwort mosaic virus: comparison with the analogous 35S promoter from cauliflower mosaic virus and the regulated mannopine synthase promoter

  1990cited by this paper
• Patterns in plant development (2nd edn)

  1990cited by this paper
• Intron-mediated enhancement of heterologous gene expression in maize

  1990cited by this paper
• High-velocity microprojectiles for delivering nucleic acids into living cells

  1987cited by this paper
• Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter

  1985cited by this paper
• Specific DNA binding of GAL4, a positive regulatory protein of yeast.

  1985cited by this paper
• A functional map of the nopaline synthase promoter.

  1984cited by this paper
• Nopaline synthase: transcript mapping and DNA sequence.

  1982cited by this paper
• Patterns in plant development: Subject index

  1972cited by this paper
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  1967cited by this paper

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