Supplementary Material and Methods

No abstract is available for this paper.

• Publication year

  2012

• Venue

  Unknown venue

• Publication date

  Unknown publication date

• Fields of study

  Biology

• Identifiers

  No identifiers available.

• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar

• No claims are published for this paper.

• No concepts are published for this paper.

• Supplementary Figure S1

  2019cited by this paper
• Supplementary Table 4

  2015cited by this paper
• Supplementary Table 3

  2015cited by this paper
• Phosphorylation of neuronal Lysine‐Specific Demethylase 1LSD1/KDM1A impairs transcriptional repression by regulating interaction with CoREST and histone deacetylases HDAC1/2

  2014cited by this paper
• Endocrine-therapy-resistant ESR1 variants revealed by genomic characterization of breast-cancer-derived xenografts.

  2013cited by this paper
• Uniform, optimal signal processing of mapped deep-sequencing data

  2013cited by this paper
• The Genotype-Tissue Expression (GTEx) project

  2013cited by this paper
• Screening therapeutic EMT blocking agents in a three-dimensional microenvironment.

  2013cited by this paper
• A divalent interaction between HPS1 and HPS4 is required for the formation of the biogenesis of lysosome-related organelle complex-3 (BLOC-3).

  2013cited by this paper
• Functional characterization of EZH2β reveals the increased complexity of EZH2 isoforms involved in the regulation of mammalian gene expression

  2013cited by this paper
• Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

  2013cited by this paper
• Large-scale gene function analysis with the PANTHER classification system

  2013cited by this paper
• NETs Are a Source of Citrullinated Autoantigens and Stimulate Inflammatory Responses in Rheumatoid Arthritis

  2013cited by this paper
• CARM1 automethylation is controlled at the level of alternative splicing

  2013cited by this paper
• Integrative radiogenomic profiling of squamous cell lung cancer.

  2013cited by this paper
• New population-based exome data are questioning the pathogenicity of previously cardiomyopathy-associated genetic variants

  2013cited by this paper
• Targeting of distinct signaling cascades and cancer-associated fibroblasts define the efficacy of Sorafenib against prostate cancer cells

  2012cited by this paper
• Comprehensive molecular portraits of human breast tumors

  2012cited by this paper
• The Life History of 21 Breast Cancers

  2012cited by this paper
• Comprehensive Investigation of Parameter Choice in Viral Integration Site Analysis and Its Effects on the Gene Annotations Produced

  2012cited by this paper
• Targeting Chk1 in p53-deficient triple-negative breast cancer is therapeutically beneficial in human-in-mouse tumor models.

  2012cited by this paper
• PKM2 phosphorylates histone H3 and promotes gene transcription and tumorigenesis.

  2012cited by this paper
• The Transcription Factor Erg Controls Endothelial Cell Quiescence by Repressing Activity of Nuclear Factor (NF)-κB p65*

  2012cited by this paper
• Serum‐ and Stromal Cell‐Free Hypoxic Generation of Embryonic Stem Cell‐Derived Hematopoietic Cells In Vitro, Capable of Multilineage Repopulation of Immunocompetent Mice

  2012cited by this paper
• Conditionally reprogrammed cells represent a stem-like state of adult epithelial cells

  2012cited by this paper
• NIH Image to ImageJ: 25 years of image analysis

  2012cited by this paper
• The multifaceted balance of TNF-α and type I/II interferon responses in SLE and RA: how monocytes manage the impact of cytokines

  2012cited by this paper
• TET2 Mutations Are Associated with Specific 5-Methylcytosine and 5-Hydroxymethylcytosine Profiles in Patients with Chronic Myelomonocytic Leukemia

  2012cited by this paper
• Alpharetroviral self-inactivating vectors: long-term transgene expression in murine hematopoietic cells and low genotoxicity.

  2012cited by this paper
• Selectivity, cocrystal structures, and neuroprotective properties of leucettines, a family of protein kinase inhibitors derived from the marine sponge alkaloid leucettamine B.

  2012cited by this paper
• The UCSC Genome Browser database: extensions and updates 2013

  2012cited by this paper
• Scalable In Situ Hybridization on Tissue Arrays for Validation of Novel Cancer and Tissue-Specific Biomarkers

  2012cited by this paper
• Interleukin-7 Links T Lymphocyte and Intestinal Epithelial Cell Homeostasis

  2012cited by this paper
• Type I interferons modulate vascular function, repair, thrombosis, and plaque progression in murine models of lupus and atherosclerosis.

  2012cited by this paper
• Mapping and analysis of chromatin state dynamics in nine human cell types

  2012cited by this paper
• Induced G1 phase arrest of fast-dividing cells improves the quality of genomic profiles generated by array-CGH.

  2012cited by this paper
• High VLA-4 expression is associated with adverse outcome and distinct gene expression changes in childhood B-cell precursor acute lymphoblastic leukemia at first relapse

  2011cited by this paper
• Somatic SF3B1 mutation in myelodysplasia with ring sideroblasts.

  2011cited by this paper
• Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells

  2011cited by this paper
• Netting Neutrophils Induce Endothelial Damage, Infiltrate Tissues, and Expose Immunostimulatory Molecules in Systemic Lupus Erythematosus

  2011cited by this paper
• Frequent and Simultaneous Epigenetic Inactivation of TP53 Pathway Genes in Acute Lymphoblastic Leukemia

  2011cited by this paper
• Prognostic DNA methylation patterns in cytogenetically normal acute myeloid leukemia are predefined by stem cell chromatin marks.

  2011cited by this paper
• Lingual antimicrobial peptide and IL-8 expression are oppositely regulated by the antagonistic effects of NF-κB p65 and C/EBPβ in mammary epithelial cells.

  2011cited by this paper
• The sequence of application of methotrexate and histone deacetylase inhibitors determines either a synergistic or an antagonistic response in childhood acute lymphoblastic leukemia cells

  2011cited by this paper
• Analyzing and visualizing residue networks of protein structures.

  2011cited by this paper
• Leucettines, a class of potent inhibitors of cdc2-like kinases and dual specificity, tyrosine phosphorylation regulated kinases derived from the marine sponge leucettamine B: modulation of alternative pre-RNA splicing.

  2011cited by this paper
• The 1000 Genomes Project: deep genomic sequencing waiting for deep psychiatric phenotyping.

  2011cited by this paper
• Identification of human triple-negative breast cancer subtypes and preclinical models for selection of targeted therapies.

  2011cited by this paper
• Molecular signatures database (MSigDB) 3.0

  2011cited by this paper
• Genome-wide functional screening of miR-23b as a pleiotropic modulator suppressing cancer metastasis.

  2011cited by this paper
• Day-4 Myeloid Dendritic Cells Pulsed with Whole Tumor Lysate Are Highly Immunogenic and Elicit Potent Anti-Tumor Responses

  2011cited by this paper
• Epigenetic inactivation of BCL6B, a novel functional tumour suppressor for gastric cancer, is associated with poor survival

  2011cited by this paper
• Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent.

  2011cited by this paper
• Dual role of Brg chromatin remodeling factor in Sonic hedgehog signaling during neural development

  2011cited by this paper
• GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

  2011cited by this paper
• Modulation of Dnmt3b function in vitro by interactions with Dnmt3L, Dnmt3a and Dnmt3b splice variants

  2011cited by this paper
• A Deacetylase-Deficient SIRT1 Variant Opposes Full-Length SIRT1 in Regulating Tumor Suppressor p53 and Governs Expression of Cancer-Related Genes

  2011cited by this paper
• MICE: Multivariate Imputation by Chained Equations in R

  2011cited by this paper
• Proangiogenic factor PlGF programs CD11b(+) myelomonocytes in breast cancer during differentiation of their hematopoietic progenitors.

  2011cited by this paper
• Lentiviral vector design and imaging approaches to visualize the early stages of cellular reprogramming.

  2011cited by this paper
• Pharmacological response of human cardiomyocytes derived from virus-free induced pluripotent stem cells.

  2011cited by this paper
• COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

  2010cited by this paper
• Intrinsic properties and external factors determine the differentiation bias of human embryonic stem cell lines

  2010cited by this paper
• Alternative Splicing of the Histone Demethylase LSD1/KDM1 Contributes to the Modulation of Neurite Morphogenesis in the Mammalian Nervous System

  2010cited by this paper
• Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

  2010cited by this paper
• Efficacy of neoadjuvant Cisplatin in triple-negative breast cancer.

  2010cited by this paper
• Clinical phenotype and genotype of children with borderline sweat test and abnormal nasal epithelial chloride transport.

  2010cited by this paper
• COT/MAP3K8 drives resistance to RAF inhibition through MAP kinase pathway reactivation

  2010cited by this paper
• Supplementary Figure S4

  2010cited by this paper
• Stromal PDGFRβ Expression in Prostate Tumors and Non-Malignant Prostate Tissue Predicts Prostate Cancer Survival

  2010cited by this paper
• Non‐classic cystic fibrosis associated with D1152H CFTR mutation

  2010cited by this paper
• Progressive activation of CyclinB1-Cdk1 coordinates entry to mitosis.

  2010cited by this paper
• The Genomic HyperBrowser: inferential genomics at the sequence level

  2010cited by this paper
• A Distinct Subset of Proinflammatory Neutrophils Isolated from Patients with Systemic Lupus Erythematosus Induces Vascular Damage and Synthesizes Type I IFNs

  2010cited by this paper
• A novel method for the genome-wide high resolution analysis of DNA damage

  2010cited by this paper
• Preclinical Characterization of the Antiviral Activity of SCH 900518 (Narlaprevir), a Novel Mechanism-Based Inhibitor of Hepatitis C Virus NS3 Protease

  2010cited by this paper
• Drug combination studies and their synergy quantification using the Chou-Talalay method.

  2010cited by this paper
• Plasma proteome profiling reveals biomarker patterns associated with prognosis and therapy selection in glioblastoma multiforme patients

  2010cited by this paper
• Protein transduction from retroviral Gag precursors

  2010cited by this paper
• Allele-specific copy number analysis of tumors

  2010cited by this paper
• Gene Expression-Based Classification of Non-Small Cell Lung Carcinomas and Survival Prediction

  2010cited by this paper
• BRD7 is a candidate tumour suppressor gene required for p53 function

  2010cited by this paper
• A new complex allele of the CFTR gene partially explains the variable phenotype of the L997F mutation

  2010cited by this paper
• Leukemia-associated genetic aberrations in mesenchymal stem cells of children with acute lymphoblastic leukemia

  2010cited by this paper
• Low Levels of Phosphorylated Epidermal Growth Factor Receptor in Nonmalignant and Malignant Prostate Tissue Predict Favorable Outcome in Prostate Cancer Patients

  2010cited by this paper
• Commensal microflora and interferon‐γ promote steady‐state interleukin‐7 production in vivo

  2010cited by this paper
• 2010 Rheumatoid arthritis classification criteria: an American College of Rheumatology/European League Against Rheumatism collaborative initiative.

  2010cited by this paper
• Characterization of resistance to the protease inhibitor boceprevir in hepatitis C virus–infected patients

  2009cited by this paper
• Genome-wide DNA methylation profiling using Infinium® assay.

  2009cited by this paper
• The Peroxisome Proliferator-Activated Receptor γ Agonist Pioglitazone Improves Cardiometabolic Risk and Renal Inflammation in Murine Lupus1

  2009cited by this paper
• Alternative Splicing of NURF301 Generates Distinct NURF Chromatin Remodeling Complexes with Altered Modified Histone Binding Specificities

  2009cited by this paper
• Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

  2009cited by this paper
• Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set.

  2009cited by this paper
• An efficient method to assemble linear DNA templates for in vitro screening and selection systems

  2009cited by this paper
• CXCL14 is an autocrine growth factor for fibroblasts and acts as a multi-modal stimulator of prostate tumor growth

  2009cited by this paper
• A Novel DNMT3B Splice Variant Expressed in Tumor and Pluripotent Cells Modulates Genomic DNA Methylation Patterns and Displays Altered DNA Binding

  2009cited by this paper
• rtracklayer: an R package for interfacing with genome browsers

  2009cited by this paper
• Design of high-density antibody microarrays for disease proteomics: key technological issues.

  2009cited by this paper
• The 2008 revision of the World Health Organization (WHO) classification of myeloid neoplasms and acute leukemia: rationale and important changes.

  2009cited by this paper
• ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions.

  2009cited by this paper

• Characterization of Accessible Chromatin Regions in Cattle Rumen Epithelial Tissue during Weaning

  2022cites this paper
• Transcriptional regulation of the porcine miR-17-92 cluster

  2019cites this paper
• A high definition look at the NF-Y regulome reveals genome-wide associations with selected transcription factors

  2016cites this paper
• Stearoyl-CoA desaturase 1 expression is downregulated in liver and udder during E. coli mastitis through enhanced expression of repressive C/EBP factors and reduced expression of the inducer SREBP1A

  2016cites this paper
• NF-Y activates genes of metabolic pathways altered in cancer cells

  2015cites this paper
• Endogenous molecular-cellular hierarchical modeling of prostate carcinogenesis uncovers robust structure.

  2015cites this paper
• A positive feedback loop between Gli1 and tyrosine kinase Hck amplifies shh signaling activities in medulloblastoma

  2015cites this paper
• How tissues tell time Exploring transcriptional controls ensuring phase- and tissue-specific circadian rhythms of gene activities in peripheral cells

  2015cites this paper
• How tissues tell time

  2015cites this paper
• Natural selection for the Duffy-null allele in the recently admixed people of Madagascar

  2014cites this paper
• How tissues tell time Exploring transcriptional controls for phase- and tissue-specific circadian gene activities in peripheral cells D I S S E R TAT I O N

  2014cites this paper
• How tissues tell time Exploring transcriptional controls ensuring phase- and tissue-specific circadian rhythms of gene activities in peripheral cells

  2014cites this paper
• Ultraviolet irradiation represses TGF‐β type II receptor transcription through a 38‐bp sequence in the proximal promoter in human skin fibroblasts

  2014cites this paper
• Characterization of a far upstream located promoter expressing the acetyl-CoA carboxylase-alpha in the brain of cattle.

  2013cites this paper