Genomic annotation and transcriptome analysis of the zebrafish (Danio rerio) hox complex with description of a novel member, hoxb13a

No abstract is available for this paper.

• Publication year

  2005

• Venue

  Evolution & Development

• Publication date

  2005-09-01

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1111/j.1525-142X.2005.05042.xPMID 16174031
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Transcriptome profiling of adult zebrafish at the late stage of chronic tuberculosis due to Mycobacterium marinum infection.

  2005cited by this paper
• transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

  2005cited by this paper
• PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)]

  2004cited by this paper
• PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of organisms

  2004cited by this paper
• Evidence for a Hox14 paralog group in vertebrates.

  2004cited by this paper
• Phylogenetic Timing of the Fish-Specific Genome Duplication Correlates with the Diversification of Teleost Fish

  2004cited by this paper
• Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica

  2004cited by this paper
• Differences in expression pattern and function between zebrafish hoxc13 orthologs: recruitment of Hoxc13b into an early embryonic role.

  2004cited by this paper
• Comparative genomic analysis of vertebrate Hox3 and Hox4 genes.

  2004cited by this paper
• MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

  2004influential reference
• Posterior hoxa genes expression during zebrafish bony fin ray development and regeneration suggests their involvement in scleroblast differentiation

  2003cited by this paper
• Evolution and diversity of fish genomes.

  2003cited by this paper
• Comparative genomic analysis as a tool for biological discovery

  2003cited by this paper
• Polymorphism, shared functions and convergent evolution of genes with sequences coding for polyalanine domains.

  2003cited by this paper
• Hox cluster duplications and the opportunity for evolutionary novelties

  2003cited by this paper
• Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish.

  2003cited by this paper
• Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters.

  2003cited by this paper
• Knockdown of duplicated zebrafish hoxb1 genes reveals distinct roles in hindbrain patterning and a novel mechanism of duplicate gene retention.

  2002cited by this paper
• Serial deletions and duplications suggest a mechanism for the collinearity of Hoxd genes in limbs

  2002cited by this paper
• TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

  2002cited by this paper
• A novel stable polyalanine [poly(A)] expansion in the HOXA13 gene associated with hand-foot-genital syndrome: proper function of poly(A)-harbouring transcription factors depends on a critical repeat length?

  2002cited by this paper
• Expression of Hoxb13 and Hoxc10 in developing and regenerating Axolotl limbs and tails.

  2001influential reference
• Comparative genomics provides evidence for an ancient genome duplication event in fish.

  2001cited by this paper
• Euteleost fish genomes are characterized by expansion of gene families.

  2001cited by this paper
• Additional hox clusters in the zebrafish: divergent expression patterns belie equivalent activities of duplicate hoxB5 genes

  2001cited by this paper
• Genome duplications and accelerated evolution of Hox genes and cluster architecture in teleost fishes

  2001influential reference
• The amphioxus Hox cluster: deuterostome posterior flexibility and Hox14

  2000cited by this paper
• Vertebrate evolution: recent perspectives from fish.

  2000cited by this paper
• Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions.

  1999cited by this paper
• Preservation of duplicate genes by complementary, degenerative mutations.

  1999cited by this paper
• Hox genes in brachiopods and priapulids and protostome evolution

  1999cited by this paper
• Zebrafish hox clusters and vertebrate genome evolution.

  1998cited by this paper
• Hoxb-13: a new Hox gene in a distant region of the HOXB cluster maintains colinearity.

  1996influential reference
• Hox genes and chordate evolution.

  1996cited by this paper
• A molecular approach to the evolution of vertebrate paired appendages.

  1996cited by this paper
• Des nageoires aux membres: l'apport de la génétique moléculaire du développement dans l'étude de l'évolution des morphologies chez les vertébrés

  1996cited by this paper
• Gene transpositions in the HoxD complex reveal a hierarchy of regulatory controls.

  1996cited by this paper
• Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies

  1996cited by this paper
• Hoxa 11 structure, extensive antisense transcription, and function in male and female fertility.

  1995cited by this paper
• Hox gene expression in teleost fins and the origin of vertebrate digits

  1995cited by this paper
• Analysis of the Hoxd-3 Gene: Structure and Localization of Its Sense and Natural Antisense Transcripts

  1995cited by this paper
• Archetypal organization of the amphioxus Hox gene cluster

  1994cited by this paper
• Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos.

  1993cited by this paper
• The molecular basis for metameric pattern in the Drosophila embryo.

  1987cited by this paper
• A gene complex controlling segmentation in Drosophila

  1978cited by this paper
• Evolution by Gene Duplication

  1970cited by this paper
• Materials for the Study of Variation: Treated with Especial Regard to Discontinuity in the Origin of Species

  year unknowncited by this paper

• Differential expression pattern of hox genes between larval development and metamorphosis of Senegalese sole (Solea senegalensis, Kaup 1858)

  2025cites this paper
• Hox genes control homocercal caudal fin development and evolution

  2024cites this paper
• Genomic Characterization of hox Genes in Senegalese Sole (Solea senegalensis, Kaup 1858): Clues to Evolutionary Path in Pleuronectiformes

  2022cites this paper
• The developmental and genetic architecture of the sexually selected male ornament of swordtails

  2020cites this paper
• Transcriptome sequencing and de novo analysis of the northern snakehead, Ophiocephalus argus

  2019cites this paper
• Expression of Hox paralog group 13 genes in adult and developing Megalobrama amblycephala.

  2016cites this paper
• Nanotoxicology in Green Nanoscience

  2013cites this paper
• Augmenting transcriptome assembly combinatorially

  2013cites this paper
• Study of effects of radio-wave frequency radiation emitted from cellular telephones on embryonic development of danio rerio

  2013cites this paper
• Innovations in Green Chemistry and Green Engineering: Selected Entries from the Encyclopedia of Sustainability Science and Technology

  2013cites this paper
• Comparison of the Exomes of Common Carp (Cyprinus carpio) and Zebrafish (Danio rerio)

  2012influential citation
• Two Origins of Blastemal Progenitors Define Blastemal Regeneration of Zebrafish Lower Jaw

  2012cites this paper
• Identification of hoxb1b downstream genes: hoxb1b as a regulatory factor controlling transcriptional networks and cell movement during zebrafish gastrulation.

  2010cites this paper
• MiR-10 targets HoxB1a and HoxB3a and is required for correct migration of the Xth nerve and trunk motorneurons

  2009cites this paper
• DNA microarray technology and its application in fish biology and aquaculture

  2009cites this paper
• Noncoding RNA in development

  2008cites this paper
• MiR-10 Represses HoxB1a and HoxB3a in Zebrafish

  2008cites this paper
• Alterations in micro-ribonucleic acid expression profiles reveal a novel pathway for estrogen regulation.

  2008cites this paper
• Retracted: Gene duplication and functional evolution of Hox genes in fishes.

  2008cites this paper
• Fish 'n' chips: the use of microarrays for aquatic toxicology.

  2007cites this paper
• PCR survey of hox genes in the goldfish Carassius auratus auratus.

  2007cites this paper
• Molecular evolution of the MAGUK family in metazoan genomes

  2007cites this paper
• Survey Sequencing and Comparative Analysis of the Elephant Shark (Callorhinchus milii) Genome

  2007cites this paper
• Gene expression patterns of the ALP family during zebrafish development.

  2007cites this paper
• Hox, microRNAs and evolution : new insights into the patterning of the body axis

  2007cites this paper
• Triple-Label Whole-Mount

  2007cites this paper
• Microarray Studies of Gene Expression in Fish

  2006cites this paper
• Aplicaciones de la genética para la mejora de la acuicultura

  2005cites this paper
• Computational optimisation of optical projection tomography for 3D image analysis

  year unknowncites this paper
• PABS : Paradigm Application on Biological systems ; a computational biological systems modelling tool

  year unknowncites this paper