The potential role of androgenesis in cytoplasmic-nuclear phylogenetic discordance.

No abstract is available for this paper.

• Publication year

  2011

• Venue

  Systematic Biology

• Publication date

  Unknown publication date

• Fields of study

  Biology, Medicine

• Identifiers
  DOI 10.1093/sysbio/syq070PMID 21060067
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Biologically inspired phylogenetic models strongly outperform the no common mechanism model.

  2011influential reference
• Phylogenetic Inference

  2011cited by this paper
• On Rogers' proof of identifiability for the GTR + Γ + I model.

  2011cited by this paper
• The Phylogenetic Handbook: A Practical Approach to Phylogenetic Analysis and Hypothesis Testing edited by LEMEY, P., SALEMI, M., and VANDAMME, A.‐M.

  2010cited by this paper
• The akaike information criterion will not choose the no common mechanism model.

  2010influential reference
• Consistency of Bayesian inference of resolved phylogenetic trees.

  2010cited by this paper
• Evidence for an ancient adaptive episode of convergent molecular evolution

  2009cited by this paper
• STEM: species tree estimation using maximum likelihood for gene trees under coalescence

  2009cited by this paper
• Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: a model.

  2009cited by this paper
• Estimating species phylogenies using coalescence times among sequences.

  2009cited by this paper
• Frequency of androgenesis in Poa arachnifera interspecific hybridizations

  2009cited by this paper
• Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics

  2009cited by this paper
• Reproductive isolation in Saccharomyces

  2009cited by this paper
• Cypress Surrogate Mother Produces Haploid Progeny From Alien Pollen

  2008cited by this paper
• Phylogenetic information complexity: is testing a tree easier than finding it?

  2008cited by this paper
• Revisiting an Equivalence Between Maximum Parsimony and Maximum Likelihood Methods in Phylogenetics

  2008cited by this paper
• A Bayesian perspective on a non-parsimonious parsimony model.

  2008cited by this paper
• Fast and reliable reconstruction of phylogenetic trees with very short edges

  2008cited by this paper
• An independent heterotachy model and its implications for phylogeny and divergence time estimation.

  2008influential reference
• All-Male Asexuality: Origin and Maintenance of Androgenesis in the Asian Clam Corbicula

  2008influential reference
• Shrinkage Effect in Ancestral Maximum Likelihood

  2008cited by this paper
• Evidence and Evolution: The logic behind the science

  2008cited by this paper
• Taxon sampling and the accuracy of phylogenetic analyses

  2008cited by this paper
• Parsimony and explanatory power

  2008cited by this paper
• Androgenetic haploids and SSR markers as tools for the development of tropical maize hybrids

  2007cited by this paper
• Identifiability of a Markovian model of molecular evolution with gamma-distributed rates

  2007cited by this paper
• High-resolution species trees without concatenation

  2007cited by this paper
• Mixed-up Trees: the Structure of Phylogenetic Mixtures

  2007influential reference
• Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites.

  2007cited by this paper
• How eggs arrest at metaphase II: MPF stabilisation plus APC/C inhibition equals Cytostatic Factor

  2007cited by this paper
• MITONUCLEAR DISCORDANCE IS CAUSED BY RAMPANT MITOCHONDRIAL INTROGRESSION IN NEODIPRION (HYMENOPTERA: DIPRIONIDAE) SAWFLIES

  2007cited by this paper
• Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae).

  2007cited by this paper
• Phylogenetic mixtures on a single tree can mimic a tree of another topology.

  2007cited by this paper
• Inverting Random Functions III: Discrete MLE Revisited

  2006cited by this paper
• Inferring phylogeny despite incomplete lineage sorting.

  2006cited by this paper
• Maximum parsimony and the phylogenetic information in multistate characters

  2006cited by this paper
• Use of androgenesis for estimating maternal and mitochondrial genome effects on development and oxygen consumption in rainbow trout, Oncorhynchus mykiss.

  2006cited by this paper
• Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale).

  2006cited by this paper
• Phylogeny of Mixture Models: Robustness of Maximum Likelihood and Non-Identifiable Distributions

  2006influential reference
• Parsimony, phylogeny, and genomics

  2006cited by this paper
• Invasion of the clonal clams: Corbicula lineages in the New World

  2005influential reference
• The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models

  2005cited by this paper
• A call for likelihood phylogenetics even when the process of sequence evolution is heterogeneous.

  2005cited by this paper
• Variation for winter hardiness generated by androgenesis from Festuca pratensis × Lolium multiflorum amphidiploid cultivars with different winter susceptibility

  2005cited by this paper
• Androgenic haploids: Factors controlling development and its application in crop improvement

  2005cited by this paper
• Heterotachy and long-branch attraction in phylogenetics

  2005cited by this paper
• A STOCHASTIC MODEL OF LANGUAGE EVOLUTION THAT INCORPORATES HOMOPLASY AND BORROWING

  2005cited by this paper
• Clonal reproduction by males and females in the little fire ant

  2005cited by this paper
• LEAKY PREZYGOTIC ISOLATION AND POROUS GENOMES: RAPID INTROGRESSION OF MATERNALLY INHERITED DNA

  2005influential reference
• Choosing the best genes for the job: the case for stationary genes in genome-scale phylogenetics.

  2005cited by this paper
• Rate of change of concomitantly variable codons

  2005cited by this paper
• Evolutionary trees and the Ising model on the Bethe lattice: a proof of Steel’s conjecture

  2005cited by this paper
• Induced Androgenesis in Fish: Obtaining Viable Nucleocytoplasmic Hybrids

  2005cited by this paper
• Inconsistency of maximum parsimony revisited.

  2004cited by this paper
• A phase transition for a random cluster model on phylogenetic trees.

  2004cited by this paper
• A revision of some Asian and African freshwater clams assigned to Type=”Italic”>Corbicula fluminalis (Müller, 1774) (Mollusca: Bivalvia: Corbiculidae), with a review of anatomical characters and reproductive features based on museum collections

  2004cited by this paper
• Two further links between MP and ML under the poisson model

  2004cited by this paper
• Genome-scale phylogeny and the detection of systematic biases.

  2004cited by this paper
• Peeling phylogenetic 'oranges'

  2004cited by this paper
• AFLPs RESOLVE PHYLOGENY AND REVEAL MITOCHONDRIAL INTROGRESSION WITHIN A SPECIES FLOCK OF AFRICAN ELECTRIC FISH (MORMYROIDEA: TELEOSTEI)

  2004cited by this paper
• Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis

  2004cited by this paper
• Transfer of cytoplasmic male sterility by spontaneous androgenesis in tobacco (Nicotiana tabacum L.)

  2004influential reference
• 126: Probability and Random Processes

  2004cited by this paper
• Reproduction and development of the freshwater clam Corbicula australis in southeast Australia

  2004cited by this paper
• Mitochondrial differentiation, introgression and phylogeny of species in the Tegenaria atrica group (Araneae: Agelenidae)

  2004cited by this paper
• Generation of androgenic haploids from interspecific hybridization of Poa arachnifera x Poa secunda

  2004cited by this paper
• Androgenetic Reproduction in a Freshwater Diploid Clam Corbicula fluminea (Bivalvia: Corbiculidae)

  2003cited by this paper
• A MODEL FOR CHLOROPLAST CAPTURE

  2003influential reference
• Androgenesis and conservation of fishes

  2003cited by this paper
• The Evolution of Androgenesis

  2003influential reference
• Widespread horizontal transfer of mitochondrial genes in flowering plants

  2003cited by this paper
• A model for chloroplast capture.

  2003cited by this paper
• Inverting Random Functions II: Explicit Bounds for Discrete Maximum Likelihood Estimation, with Applications

  2002cited by this paper
• Surrogate mother for endangered Cupressus

  2001cited by this paper
• Distinguishing migration from isolation: a Markov chain Monte Carlo approach.

  2001cited by this paper
• A likelihood approach to estimating phylogeny from discrete morphological character data.

  2001cited by this paper
• Corbicula fluminea (Bivalvia: Corbiculidae): a possible second molluscan intermediate host of Echinostoma cinetorchis (Trematoda: Echinostomatidae) in Korea.

  2001cited by this paper
• Geometry of the Space of Phylogenetic Trees

  2001cited by this paper
• From Gene Trees to Species Trees

  2000cited by this paper
• Nonindigenous freshwater organisms : vectors, biology, and impacts

  2000cited by this paper
• Slicing hyperdimensional oranges: the geometry of phylogenetic estimation.

  2000cited by this paper
• Unreduced diploid nuclei in Cupressus dupreziana A. Camus pollen

  2000cited by this paper
• Non-reductional Spermatozoa in Three Shell Color Types of the Freshwater Clam Corbicula fluminea in Taiwan

  1999cited by this paper
• Dynamics of Cell Division

  1999cited by this paper
• Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species.

  1999cited by this paper
• The Performance of Neighbor-Joining Methods of Phylogenetic Reconstruction

  1999cited by this paper
• Cytological evidence of spontaneous androgenesis in the freshwater clam Corbicula leana Prime

  1998cited by this paper
• Unexpected DNA content in the endosperm of Cupressus dupreziana A. Camus seeds and its implications in the reproductive process

  1998cited by this paper
• The molecular basis of cytoplasmic male sterility and fertility restoration

  1998cited by this paper
• INTROGRESSIVE HYBRIDIZATION AND NONCONCORDANT EVOLUTIONARY HISTORY OF MATERNAL AND PATERNAL LINEAGES IN NORTH AMERICAN DEER

  1998cited by this paper
• Links between maximum likelihood and maximum parsimony under a simple model of site substitution.

  1997influential reference
• Inferring complex phylogenies.

  1996cited by this paper
• Meiotic metaphase arrest in animal oocytes: its mechanisms and biological significance.

  1996cited by this paper
• Embryo Sac Development in the Maize indeterminate gametophyte1 Mutant: Abnormal Nuclear Behavior and Defective Microtubule Organization.

  1996cited by this paper
• Full reconstruction of Markov models on evolutionary trees: identifiability and consistency.

  1996influential reference
• MATING SYSTEM AND ASYMMETRIC HYBRIDIZATION IN A MIXED STAND OF EUROPEAN OAKS

  1996cited by this paper
• Molecular marker incongruence in plant hybrid zones and phylogenetic trees

  1996influential reference
• Inferring complex phytogenies

  1996cited by this paper
• Haploidy and androgenesis in Drosophila.

  1995cited by this paper
• Production of androgenetic diploid loach Misgurnus anguillicaudatus using spermatozoa of natural tetraploids

  1995cited by this paper

• From Geographic Parthenogenesis to Reticulate (Hybridogenous) Speciation: I.S. Darevsky (1924–2009), Rock Lizards of the Caucasus, and the Problem of Clonal Evolution

  2025cites this paper
• Reconsidering cytonuclear discordance in the genomic age.

  2025cites this paper
• Niche similarity accompanying COI genetic differentiations in asexual and sexual Corbicula lineages within East and Southeast Asia

  2024influential citation
• I. S. Darevsky (1924–2009) and rock lizards of the Caucasus: from geographic parthenogenesis to reticulate (hybridogenous) speciation

  2024cites this paper
• Sperm‐dependent asexual species and their role in ecology and evolution

  2023cites this paper
• Rampant nuclear–mitochondrial–plastid phylogenomic discordance in globally distributed calcifying microalgae

  2022cites this paper
• Pervasive Phylogenomic Incongruence Underlies Evolutionary Relationships in Eyebrights (Euphrasia, Orobanchaceae)

  2022cites this paper
• Unique issues of the species concept in molluscs of the genus Corbicula: a mismatch of mitochondrial and nuclear genomes

  2021cites this paper
• Examining the Needle in the Haystack: Evolutionary Relationships in the Mistletoe Genus Loranthus (Loranthaceae)

  2021cites this paper
• Ghost Introgression: Spooky Gene Flow in the Distant Past

  2020cites this paper
• Substantial genetic mixing among sexual and androgenetic lineages within the clam genus Corbicula

  2019cites this paper
• Distinct biogeographic origins of androgenetic Corbicula lineages followed by genetic captures

  2019cites this paper
• Species Delimitation in Herpetology

  2019cites this paper
• Androgenic Diploids of Erianthus arundinaceus with Paternal Chloroplast and Mitochondrial Genomes in Backcross Progeny of Saccharum × Erianthus Intergeneric Hybrids

  2018cites this paper
• Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia.

  2018cites this paper
• Mitonuclear discordance in wolf spiders: Genomic evidence for species integrity and introgression

  2018cites this paper
• New prospects in the detection and comparative analysis of hybridization in the tree of life.

  2018cites this paper
• Hybridity has a greater effect than paternal genome dosage on heterosis in sugar beet (Beta vulgaris)

  2018cites this paper
• Cytonuclear incongruences hamper species delimitation in the socially polymorphic desert ants of the Cataglyphis albicans group in Israel

  2018cites this paper
• Molecular and evolutionary genetics of invasive bivalves

  2018cites this paper
• Mitonuclear discordance as a confounding factor in the DNA taxonomy of monogonont rotifers

  2018cites this paper
• Population genomics and geographical parthenogenesis in Japanese harvestmen (Opiliones, Sclerosomatidae, Leiobunum)

  2017cites this paper
• First empirical evidence of naturally occurring androgenesis in vertebrates

  2017influential citation
• Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms

  2016cites this paper
• Androgenesis: where males hijack eggs to clone themselves

  2016cites this paper
• Low Genetic Diversity and High Invasion Success of Corbicula fluminea (Bivalvia, Corbiculidae) (Müller, 1774) in Portugal

  2016cites this paper
• Combined hybridization and mitochondrial capture shape complex phylogeographic patterns in hybridogenetic Cataglyphis desert ants.

  2016cites this paper
• Assignment of homoeologs to parental genomes in allopolyploids for species tree inference, with an example from Fumaria (papaveraceae).

  2015cites this paper
• Assessing the impact of phylogenetic incongruence on taxonomy, floral evolution, biogeographical history, and phylogenetic diversity.

  2015cites this paper
• Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae).

  2014cites this paper
• Genetic uniformity and long‐distance clonal dispersal in the invasive androgenetic Corbicula clams

  2014cites this paper
• Molecular Phylogenetics and Taxonomy of the Genus Boechera and Related Genera (Brassicaceae: Boechereae)

  2013cites this paper
• Evolutionary and ecological implications of sexual parasitism.

  2013cites this paper
• Production of androgenetic diploid loach by cold-shock of eggs fertilized with diploid sperm.

  2013cites this paper
• Tracking of wisent–bison–yak mitochondrial evolution

  2012influential citation
• Indehiscent sporangia enable the accumulation of local fern diversity at the Qinghai-Tibetan Plateau

  2012cites this paper
• Phylogenetic status of brown trout Salmo trutta populations in five rivers from the southern Caspian Sea and two inland lake basins, Iran: a morphogenetic approach.

  2012cites this paper
• Androgenesis: a review through the study of the selfish shellfish Corbicula spp.

  2012influential citation
• Rare gene capture in predominantly androgenetic species

  2011cites this paper