TESS3: fast inference of spatial population structure and genome scans for selection

No abstract is available for this paper.

• Publication year

  2016

• Venue

  Molecular Ecology Resources

• Publication date

  2016-03-01

• Fields of study

  Biology, Medicine, Computer Science

• Identifiers
  DOI 10.1111/1755-0998.12471PMID 26417651
• External record

  Open on Semantic Scholar

• Source metadata

  Semantic Scholar, PubMed

• No claims are published for this paper.

• No concepts are published for this paper.

• Data used for the study

  2017cited by this paper
• On applications of landscape genetics

  2016cited by this paper
• Criteria for selecting microhaplotypes: mixture detection and deconvolution

  2015cited by this paper
• Detecting individual ancestry in the human genome

  2015cited by this paper
• Detecting individual ancestry in the human

  2015cited by this paper
• LEA: An R package for landscape and ecological association studies

  2015cited by this paper
• Fast and ecient estimation of individual ancestry coecients

  2014influential reference
• fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

  2014cited by this paper
• Fast and Efficient Estimation of Individual Ancestry Coefficients

  2014influential reference
• Forecasting changes in population genetic structure of alpine plants in response to global warming

  2012cited by this paper
• Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

  2011cited by this paper
• Fast Nonnegative Matrix Factorization: An Active-Set-Like Method and Comparisons

  2011cited by this paper
• Graph Regularized Nonnegative Matrix Factorization for Data Representation

  2011cited by this paper
• Perspectives on the use of landscape genetics to detect genetic adaptive variation in the field

  2010cited by this paper
• Genome-wide association study of 107 phenotypes in a common set of Arabidopsis thaliana inbred lines

  2010cited by this paper
• Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

  2010influential reference
• Applications of landscape genetics in conservation biology: concepts and challenges

  2010cited by this paper
• THE STATE OF THE FIELD: Spatially explicit Bayesian clustering models in population genetics

  2010cited by this paper
• Likelihood-Free Inference of Population Structure and Local Adaptation in a Bayesian Hierarchical Model

  2010cited by this paper
• Spatial inference of admixture proportions and secondary contact zones.

  2009influential reference
• Genetics in geographically structured populations: defining, estimating and interpreting FST

  2009cited by this paper
• Demographic History of European Populations of Arabidopsis thaliana

  2008cited by this paper
• Inference of population structure using multilocus genotype data: dominant markers and null alleles

  2007cited by this paper
• Bayesian clustering algorithms ascertaining spatial population structure: a new computer program and a comparison study

  2007cited by this paper
• Bayesian Clustering Using Hidden Markov Random Fields in Spatial Population Genetics

  2006cited by this paper
• The Arabidopsis WAVY GROWTH 2 Protein Modulates Root Bending in Response to Environmental Stimuli

  2005cited by this paper
• Geographical Genetics (Mpb-38)

  2003cited by this paper
• Laplacian Eigenmaps for Dimensionality Reduction and Data Representation

  2003cited by this paper
• Generating samples under a Wright-Fisher neutral model of genetic variation

  2002cited by this paper
• Inference of population structure using multilocus genotype data.

  2000influential reference
• Genomic Control for Association Studies

  1999cited by this paper
• Genetic data analysis II

  1997cited by this paper
• Genetic Data Analysis II.

  1997cited by this paper
• Spectral Graph Theory

  1996cited by this paper
• The History and Geography of Human Genes

  1996cited by this paper
• The history and geography of human genes

  1995cited by this paper
• Controlling the false discovery rate: a practical and powerful approach to multiple testing

  1995cited by this paper
• The Stepping Stone Model of Population Structure and the Decrease of Genetic Correlation with Distance.

  1964cited by this paper
• 'Stepping stone' model of population

  1953cited by this paper
• Les mathématiques de l'hérédité

  1948cited by this paper
• Isolation by Distance.

  1943cited by this paper

• Genomic diversity of cougars across Utah: evidence for latitudinal differentiation in a continuous population

  2026cites this paper
• Integrative phylogenetics and geography unveil Quaternary diversification and mitochondrial-nuclear discordance in Odorrana schmackeri sensu lato (Anura, Ranidae): Roles of Qinghai-Tibetan uplift, climate oscillations, and asymmetric gene flow.

  2026cites this paper
• Genetic Population Structure of the Italian Wall Lizards Podarcis siculus (Squamata: Lacertidae): Insight From Nuclear DNA Markers

  2026cites this paper
• Genomic Differentiation, Diversity, and Genetic Structuring of Euterpe edulis Mart. Morphotype in Espírito Santo, Brazil

  2026cites this paper
• Evolutionary Influences on Local Patterns of Genetic Relatedness

  2025cites this paper
• Traditional agro-livestock areas support functional landscape connectivity for syntopic pond-breeding amphibians in Mediterranean ecosystems

  2025cites this paper
• A non-invasive genetics insight into population structure and recolonization dynamics of the Eurasian otter (Lutra lutra) at the boundary of its Italian core range

  2025cites this paper
• Contrasting diversification patterns across wood rushes from Luzula sect. Luzula (Juncaceae) revealed by 3RAD genome-wide sequencing.

  2025cites this paper
• Biogeography and Social Family Structure Contribute to Cryptic Genomic Divergence in the Only Obligate Eusocial Beetle Species, Austroplatypus incompertus (Curculionidae: Platypodinae)

  2025cites this paper
• Factors Beyond Karstification Have Shaped the Population Structure of a Surface‐Dwelling Minnow (Phoxinus lumaireul) Able to Disperse Underground

  2025cites this paper
• Tales of a Super Butterfly: Is Vanessa carye a Truly Migrant Species? Unraveling Migration Using Morphological and Genomics Approaches

  2025cites this paper
• Indian Himalayan Arabidopsis thaliana population reflects deep history and might be the source of species expansion in the eastern edge

  2025cites this paper
• Geographic distance and landscape ruggedness shape genome-wide divergence and admixture in Leucostele cacti across the Atacama-central Chile biodiversity hotspot.

  2025cites this paper
• Genomic evidence of divergence-with-gene-flow in the pink shrimp Farfantepenaeus brasiliensis

  2025cites this paper
• Genomic architecture of egg mimicry and its consequences for speciation in parasitic cuckoos.

  2025cites this paper
• Graph-based pangenome reveals structural variation dynamics during cucumber breeding

  2025cites this paper
• Comparing microsatellites and single nucleotide polymorphisms to evaluate genetic structure and diversity in wolverines (Gulo gulo) across Alaska and western Canada

  2025influential citation
• Multi-species genetic patterns in a modified temperate forest from central Mexico

  2025cites this paper
• LANDSCAPE GENOMICS AND DEMOGRAPHY OF CALIFORNIA AZOLLA

  2025cites this paper
• Early signals of fragmentation of flat-tailed horned lizards in the Yuma Desert

  2025influential citation
• A Tale of Two Tails: Untangling the Phylogeography and Demographic History of Extant Species of Mulgara (Dasycercus spp.) in the Australian Arid Zone

  2025influential citation
• Ancient bridges, modern threat: Conserving landscape heterogeneity ensures sustenance of living root-bridges in Meghalaya

  2025cites this paper
• Water and Sheep: The Pronunciation and Geographical Distribution of Two Germanic Vowels in the Dialects Around the Former Zuiderzee Area

  2025cites this paper
• Parallel polygenic urban adaptation despite high gene flow in a coastal marine invertebrate

  2025cites this paper
• Genome assembly and population genomic analysis of Aegilops caudata uncover a rich source for disease and insect pest resistance for wheat improvement

  2025cites this paper
• Range-wide genetic erosion signal and deep population divergence in the declining mud shrimp Upogebia pugettensis

  2025cites this paper
• Genomic signals of ecogeographic adaptation in a wild relative are associated with improved wheat performance under drought stress

  2025cites this paper
• Contrasting whole-genome diversity patterns and adaptation in honeybees from two southern European glacial refugia

  2025cites this paper
• Genomic Diversity and Structure of Copaifera langsdorffii Populations from a Transition Zone Between the Atlantic Forest and the Brazilian Savanna

  2025cites this paper
• Population genomics of Mexican landraces of the squash Cucurbita moschata reveals structure and environmental adaptation

  2025cites this paper
• Functional connectivity patterns of the Giant Toad Rhinella horribilis in anthropogenically modified landscapes

  2025cites this paper
• Evaluating the Central–Marginal Hypothesis: Introgression and Genetic Variation at the Trailing Edge of Quercus bicolor

  2025cites this paper
• A Spectacular Northeast Pacific Invasion by a Low Genetic Diversity Parasite, Orthione Griffenis

  2025cites this paper
• Traversing the Great Lakes: Post‐glacial colonization by a widespread terrestrial salamander

  2024cites this paper
• Thematic Layers of Genomic Susceptibility for Conservation Monitoring

  2024cites this paper
• Ecogeographic signals of local adaptation in a wild relative help to identify variants associated with improved wheat performance under drought stress

  2024cites this paper
• Characterizing the Population Structure and Genetic Diversity of Iraqi Pigeons Using Ssr Markers

  2024cites this paper
• A spatial matrix factorization method to characterize ecological assemblages as a mixture of unobserved sources: An application to fish eDNA surveys

  2024cites this paper
• The genetic origins of species boundaries at subtropical and temperate ecoregions in the North American racers (Coluber constrictor)

  2024cites this paper
• Genetic support for discrete conservation units of the fossorial rodent Geomys pinetis

  2024cites this paper
• Limitations of ad hoc genotyping in detecting ash dieback tolerance in Fraxinus excelsior

  2024influential citation
• Plasmodium falciparum population dynamics in East Africa and genomic surveillance along the Kenya-Uganda border

  2024cites this paper
• Evolution history and the importance of genomic diversity facing climate change. The case of Agave marmorata Roezl., a microendemic agave used for mezcal production

  2024cites this paper
• Population structure and plastron shape variability of European pond turtles (Emys orbicularis) in the Comunitat Valenciana, Spain

  2024cites this paper
• Hard edges, soft edges, and species range evolution: A genomic analysis of the Cumberland Plateau salamander

  2024cites this paper
• Genotypic screening for salinity tolerance of rice genotypes from Eastern and Southern Africa at seedling stage

  2024influential citation
• Montane diversification as a mechanism of speciation in neotropical butterflies

  2024cites this paper
• Phylogeography and paleoclimatic range dynamics explain variable outcomes to contact across a species' range

  2024cites this paper
• Understanding species limits through the formation of phylogeographic lineages

  2024cites this paper
• BoundaryStats: An R package to calculate boundary overlap statistics

  2024cites this paper
• Isolation, small population size, and management influence inbreeding and reduced genetic variation in K’gari dingoes

  2024cites this paper
• When a name changes everything: taxonomy and conservation of the Atlantic bushmaster (Lachesis Daudin, 1803) (Serpentes: Viperidae: Crotalinae)

  2024cites this paper
• Population Genomic Scans for Natural Selection and Demography.

  2024cites this paper
• Genomic population structure of great hammerhead sharks (Sphyrna mokarran) across the Indo-Pacific

  2024cites this paper
• Large-scale lexical and genetic alignment supports a hybrid model of Han Chinese demic and cultural diffusions

  2024cites this paper
• Population genomics and distribution modeling revealed the history and suggested a possible future of the endemic Agave aurea (Asparagaceae) complex in the Baja California Peninsula

  2024cites this paper
• Genomic insights into the critically endangered King Island scrubtit

  2024cites this paper
• Genetic differentiation of the Capparis spinosa group in the Mediterranean area

  2024cites this paper
• Microgeographic population structuring in a genus of California trapdoor spiders and discovery of an enigmatic new species (Euctenizidae: Promyrmekiaphila korematsui sp. nov.)

  2024influential citation
• A genotyping array for the globally invasive vector mosquito, Aedes albopictus

  2024cites this paper
• Scots pine – panmixia and the elusive signal of genetic adaptation

  2024cites this paper
• Broken Ring Speciation in California Mygalomorph Spiders (Nemesiidae, Calisoga)

  2024influential citation
• Genetic structuring of Fishers in British Columbia, Canada: implications for population conservation and management

  2024cites this paper
• Optimising Sampling Design for Landscape Genomics

  2024influential citation
• Range-wide phylogeography of the golden jackals (Canis aureus) reveals multiple sources of recent spatial expansion and admixture with dogs at the expansion front

  2024cites this paper
• Genetic consequences of Last Glacial-Holocene changes in snowfall regime in Arnica mallotopus populations: A plant confined to heavy-snow areas of Japan.

  2024cites this paper
• Remnant kenngoor (Phascogale calura) retain genetic connectivity and genetic diversity in a highly fragmented landscape

  2024cites this paper
• Molecular characterisation of Pinus sylvestris (L.) in Ireland at the western limit of the species distribution

  2024cites this paper
• Centrality to the metapopulation is more important for population genetic diversity than habitat area or fragmentation

  2024cites this paper
• Phylogeography, taxonomy, and conservation of the endangered brown howler monkey, Alouatta guariba (Primates, Atelidae), of the Atlantic Forest

  2024cites this paper
• The Bear Truth: Analyzing Genetic Variability and Population Structure in Sloth Bear across the Vidarbha Landscape Using Microsatellite Markers

  2024cites this paper
• The burden of anthropogenic changes and mutation load in a critically endangered harrier from the Reunion biodiversity hotspot, Circus maillardi

  2024cites this paper
• Genomic and pangenomic analyses provide insights into the population history and genomic diversification of bottle gourd

  2024cites this paper
• mapmixture: An R package and web app for spatial visualisation of admixture and population structure.

  2024cites this paper
• Seedling root system adaptation to water availability during maize domestication and global expansion

  2024cites this paper
• Reconstructing the colonization history of Indo‐Pacific bottlenose dolphins (Tursiops aduncus) in Northwestern Australia

  2023influential citation
• Conservation Genetic Analysis of Blanding’s Turtles across Ohio, Indiana, and Michigan

  2023cites this paper
• Considering admixture when producing draft genomes: an example in North American ratsnakes (Pantherophis alleghaniensis/Pantherophis obsoletus)

  2023cites this paper
• The impact of geography and climate on the population structure and local adaptation in a wild bee

  2023influential citation
• Isolation by resistance explains genetic diversity in the Arremon brushfinches of northern Mesoamerica

  2023influential citation
• Empirical landscape genetic comparison of single nucleotide polymorphisms and microsatellites in three arid‐zone mammals with high dispersal capacity

  2023cites this paper
• Population genomic analysis reveals geographic structure and climatic diversification for Macrophomina phaseolina isolated from soybean and dry bean across the United States, Puerto Rico, and Colombia

  2023influential citation
• Historical Selection, Adaptation Signatures, and Ambiguity of Introgressions in Wheat

  2023cites this paper
• Stable dingo population structure and purity over 11 years of lethal management

  2023influential citation
• The Intriguing Biogeographic Pattern of the Italian Wall Lizard Podarcis siculus (Squamata: Lacertidae) in the Tuscan Archipelago Reveals the Existence of a New Ancient Insular Clade

  2023cites this paper
• Genomic responses to parallel temperature gradients in the eelgrass Zostera marina in adjacent bays

  2023cites this paper
• Glacial vicariance and secondary contact shape demographic histories in a freshwater mussel species complex.

  2023cites this paper
• Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia

  2023cites this paper
• Genome-wide genetic variation and molecular surveillance of drug resistance in Plasmodium falciparum isolates from asymptomatic individuals in Ouélessébougou, Mali

  2023cites this paper
• Coastal dwarf variants of the red swamp Banksia (Proteaceae) represent parallel ecotypic evolution rather than a divergent evolutionary lineage of single origin

  2023cites this paper
• Genetic data to describe the hybrid zone between Bufo bufo (Linnaeus, 1758) and Bufo verrucosissimus (Pallas, 1814) in northeastern Türkiye

  2023cites this paper
• Dynamics of spatial and temporal population structure of Pyricularia oryzae in Taiwan.

  2023cites this paper
• Population genomics of an Octopus species identify oceanographic barriers and inbreeding patterns

  2023cites this paper
• Genomic insights into a critically endangered island endemic songbird provide a roadmap for preventing extinction

  2023cites this paper
• Population genetic structure and hybrid zone analyses for species delimitation in the Japanese toad (Bufo japonicus)

  2023influential citation
• Towards conservation and sustainable use of an indigenous crop: A large partnership network enabled the genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions

  2023cites this paper
• In situ conservation of Helosciadium nodiflorum: a crop wild relative of celery in Germany

  2023influential citation
• Multiple paternally inherited chloroplast capture events associated with Taxus speciation in the Hengduan Mountains.

  2023cites this paper
• Fatty acid metabolism decreased while sexual selection increased in brown rats spreading south

  2023cites this paper
• Long-distance dispersal drives the genetic variation and historical demography of Quercus magnoliifolia and Quercus resinosa (Fagaceae) in the Mexican highlands

  2023influential citation